Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I3 R2
|
122 |
64.1 |
3058059 |
97.6% |
2984665 |
63.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,726,174 |
G→A |
R303R (CGC→CGT) |
yheS ← |
fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,726,174 | 0 | G | A | 100.0%
| 126.6
/ NA
| 44 | R303R (CGC→CGT) | yheS | fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (26/18); total (26/18) |
TGCGATCGCCATAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCGCGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCATACGCTCGAGC > minE/2726107‑2726237
|
tGCGATCGACATAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGcgcacg > 1:1459225/1‑70 (MQ=255)
gCGATCGCCATAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACgg > 1:2388405/1‑70 (MQ=255)
tCGCCATAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCt < 1:2880413/71‑1 (MQ=255)
cGCCATAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCt > 1:2915543/1‑70 (MQ=255)
cATAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAg > 1:1675614/1‑71 (MQ=255)
ccGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAAc > 1:2068049/1‑71 (MQ=255)
cgcTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACggg < 1:1276701/71‑1 (MQ=255)
gcTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCgg < 1:683720/64‑1 (MQ=255)
gcTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGt > 1:1476312/1‑71 (MQ=255)
cTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGtt > 1:2739550/1‑71 (MQ=255)
aCTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTc > 1:1828451/1‑71 (MQ=255)
cTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTc > 1:1485527/1‑70 (MQ=255)
cTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTc > 1:2604666/1‑70 (MQ=255)
cTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCg < 1:1011147/71‑1 (MQ=255)
tttttCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGa > 1:149038/1‑71 (MQ=255)
tttCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGa < 1:2838693/69‑1 (MQ=255)
tttCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGa > 1:2249124/1‑69 (MQ=255)
tttCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGa < 1:918301/69‑1 (MQ=255)
tttCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGAc < 1:154800/70‑1 (MQ=255)
tttCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACg > 1:1840942/1‑71 (MQ=255)
tttCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACg > 1:2566903/1‑71 (MQ=255)
tttCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACg > 1:2960442/1‑71 (MQ=255)
ttCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGATGTCGACGt > 1:1955466/1‑71 (MQ=255)
aTCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTgcgc < 1:2151032/71‑1 (MQ=255)
tCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTgcgc < 1:2013384/70‑1 (MQ=255)
cAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTgcg > 1:112529/1‑65 (MQ=255)
aGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCggggg > 1:692018/1‑70 (MQ=255)
aGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCggggg > 1:1593412/1‑70 (MQ=255)
gTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGc > 1:2726963/1‑70 (MQ=255)
aaCGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGaa < 1:2578801/44‑1 (MQ=255)
aaCGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAAt > 1:877177/1‑71 (MQ=255)
aCGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTg > 1:2665840/1‑58 (MQ=255)
aCGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAAt < 1:1278397/70‑1 (MQ=255)
cGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAAt > 1:1734861/1‑69 (MQ=255)
aTTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCt < 1:2434122/71‑1 (MQ=255)
ttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:1017058/1‑70 (MQ=255)
tGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGa > 1:2562679/1‑47 (MQ=255)
tGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTcc < 1:485174/70‑1 (MQ=255)
cAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCg < 1:149215/43‑1 (MQ=255)
ggCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCATACGc < 1:342429/71‑1 (MQ=255)
gCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCATACGCt > 1:1134171/1‑71 (MQ=255)
tttCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCATACGCTc > 1:2051768/1‑70 (MQ=255)
cGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCggg < 1:2004961/45‑1 (MQ=255)
cGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCATACGCTCGAGc < 1:2717872/70‑1 (MQ=255)
cGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCATACGCTCGAGc < 1:543085/70‑1 (MQ=255)
|
TGCGATCGCCATAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCGCGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCATACGCTCGAGC > minE/2726107‑2726237
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
