Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,726,174 |
G→A |
R303R (CGC→CGT) |
yheS ← |
fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,726,174 | 0 | G | A | 100.0%
| 154.0
/ NA
| 51 | R303R (CGC→CGT) | yheS | fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (36/15); total (36/15) |
CGCCATAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCGCGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCATACGC > minE/2726113‑2726231
|
cGCCATAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCt > 1:1676602/1‑70 (MQ=255)
tAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTTAAGCg > 1:2120233/1‑71 (MQ=255)
tAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCg > 1:1971187/1‑71 (MQ=255)
tAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCg > 1:2614177/1‑71 (MQ=255)
tAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCg > 1:2617654/1‑71 (MQ=255)
tAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCg > 1:3336658/1‑71 (MQ=255)
tAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCg > 1:2173079/1‑71 (MQ=255)
tAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCg > 1:2035003/1‑71 (MQ=255)
tAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCg > 1:1740407/1‑71 (MQ=255)
tAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCg > 1:1670564/1‑71 (MQ=255)
cATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGc > 1:3452822/1‑44 (MQ=255)
cATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTgcg > 1:1642899/1‑71 (MQ=255)
cATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTgcg > 1:609675/1‑71 (MQ=255)
cATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTgcg > 1:1066052/1‑71 (MQ=255)
cAGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCggg < 1:2481615/69‑1 (MQ=255)
aGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGc < 1:3891543/71‑1 (MQ=255)
aGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGc < 1:2046657/71‑1 (MQ=255)
aGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGc < 1:164841/71‑1 (MQ=255)
aGTAACGGATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGc < 1:15333/71‑1 (MQ=255)
gATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGc < 1:3454028/71‑1 (MQ=255)
gATTTGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGc < 1:2473635/71‑1 (MQ=255)
tttGGCAGGCTTTCCGGCGCATGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:4140657/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCgg > 1:3896282/1‑36 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCt > 1:706529/1‑70 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:2462982/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:1518191/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:531794/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc < 1:4301284/71‑1 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:4193309/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc < 1:1666957/71‑1 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:4110640/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:1875964/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:1895701/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:3632206/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:349795/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:211972/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:223166/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:3388584/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:3246536/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:2962830/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:2909936/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:2662590/1‑71 (MQ=255)
tttGGCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTc > 1:2485162/1‑71 (MQ=255)
ggctggctTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCa < 1:4147176/70‑1 (MQ=255)
ggCAGGCTTTCCGGCTCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCa < 1:3478849/70‑1 (MQ=255)
ggCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCa < 1:2458988/70‑1 (MQ=255)
ggCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCa < 1:4147173/70‑1 (MQ=255)
ggCAGGCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCa < 1:1111505/70‑1 (MQ=255)
ggCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCa < 1:524581/66‑1 (MQ=255)
ggCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCATACGc > 1:3461208/1‑71 (MQ=255)
ggCTTTCCGGCGCACGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCATACGc > 1:53579/1‑71 (MQ=255)
|
CGCCATAGCCCGCGCTGACTTTTTCCATCTTCAGTAACGGATTTGGCAGGCTTTCCGGCGCGCGGAAGCTAAAGCGGAACGGGTTGTCGACGTGCGCGGGGGCAATTAGCTCCATACGC > minE/2726113‑2726231
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
