Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
354 |
41.7 |
3110465 |
93.1% |
2895842 |
61.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,007,539 |
G→A |
pseudogene (367/393 nt) |
yhiK → |
ECK3474:JW5674:b3489; hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,007,539 | 0 | G | A | 100.0%
| 71.3
/ NA
| 22 | pseudogene (367/393 nt) | yhiK | ECK3474:JW5674:b3489; hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (2/20); total (2/20) |
TATGGGGCTAAATTCCCTGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAGGGCTTAGTTGTTTTCAACTACATTAAAACTCCATGAATACG > W3110S.gb/4007478‑4007580
|
tatGGGGCTAAATTCCCTGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAagg > 1:1352631/1‑64 (MQ=255)
tatGGGGCTAAATTCCCTGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAagg > 1:497872/1‑64 (MQ=255)
tatGGGGCTAAATTCCCTGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAagg > 1:2638764/1‑64 (MQ=255)
tGAAGGAAGCACGTGATAGAAATAATAAAATAATTTATTCCTCAAGGCTTAGTTGTTTTCAACt < 1:1455495/64‑1 (MQ=255)
tGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAAGGCTTAGTTGTTTTCAACt < 1:2627102/64‑1 (MQ=255)
tGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAAGGCTTAGTTGTTTTCAACt < 1:985790/64‑1 (MQ=255)
tGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAAGGCTTAGTTGTTTTCAACt < 1:962117/64‑1 (MQ=255)
tGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAAGGCTTAGTTGTTTTCAACt < 1:854432/64‑1 (MQ=255)
tGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAAGGCTTAGTTGTTTTCAACt < 1:2709501/64‑1 (MQ=255)
tGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAAGGCTTAGTTGTTTTCAACt < 1:2655322/64‑1 (MQ=255)
tGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAAGGCTTAGTTGTTTTCAACt < 1:2628149/64‑1 (MQ=255)
tGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAAGGCTTAGTTGTTTTCAACt < 1:1020379/64‑1 (MQ=255)
tGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAAGGCTTAGTTGTTTTCAACt < 1:2383067/64‑1 (MQ=255)
tGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAAGGCTTAGTTGTTTTCAACt < 1:1816166/64‑1 (MQ=255)
tGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAAGGCTTAGTTGTTTTCAACt < 1:17527/64‑1 (MQ=255)
tGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAAGGCTTAGTTGTTTTCAACt < 1:1039172/64‑1 (MQ=255)
tGATAAAAATAATAAAATAATTTATTCCTCAATGATTATTTGTTTTCAACt < 1:1497575/51‑1 (MQ=255)
ataataaaataatTTATTCCTCAAGGCTTAGTTGTTTTCAACTACATTAAAACTCCATGAATACg < 1:2607419/65‑1 (MQ=255)
ataataaaataatTTATTCCTCAAGGCTTAGTTGTTTTCAACTACATTAAAACTCCATGAATACg > 1:2668170/1‑65 (MQ=255)
ataataaaataatTTATTCCTCAAGGCTTAGTTGTTTTCAACTACATTAAAACTCCATGAATACg < 1:1549034/65‑1 (MQ=255)
ataataaaataatTTATTCCTCAAGGCTTAGTTGTTTTCAACTACATTAAAACTCCATGAATACg < 1:2931113/65‑1 (MQ=255)
ataataaaataatTTATTCCTCAAGGCTTAGTTGTTTTCAACTACATTAAAACTCCATGAATACg < 1:557278/65‑1 (MQ=255)
ataataaaataatTTATTCCTCAAGGCTTAGTTGTTTTCAACTACATTAAAACTCCATGAATACg < 1:621569/65‑1 (MQ=255)
ataataaaataatTTATTCCTCAAGGCTTAGTTGTTTTCAACTACATTAAAACTCCATGAATACg < 1:1175850/65‑1 (MQ=255)
ataataaaataatTTATTCCTCAAGGCTTAGTTGTTTTCAACTACATTAAAACTCCATGAATACg > 1:1131632/1‑65 (MQ=255)
|
TATGGGGCTAAATTCCCTGAAGGAAGCACGTGATAAAAATAATAAAATAATTTATTCCTCAGGGCTTAGTTGTTTTCAACTACATTAAAACTCCATGAATACG > W3110S.gb/4007478‑4007580
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
