Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F50 I2 R1 257 49.9 1554294 99.0% 1538751 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,363,151 T→C G115G (GGT→GGC)  yhcD → putative outer membrane fimbrial subunit usher protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,363,1510TC96.7% 205.5 / ‑6.6 61G115G (GGT→GGC) yhcDputative outer membrane fimbrial subunit usher protein
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (40/19);  total (41/20)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGTACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAACTACTCTCTGATGAGCAGCCGT  >  NC_000913/3363005‑3363295
                                                                                                                                                  |                                                                                                                                                
aaTGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCAcc                                                                                                                                               >  2:407698/1‑150 (MQ=255)
aaTGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCAcc                                                                                                                                               >  1:289170/1‑150 (MQ=255)
    gCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAAt                                                                                                                                          <  1:667219/151‑1 (MQ=255)
      gAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATc                                                                                                                                         >  1:520413/1‑150 (MQ=255)
       aaaaaaaaGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATcac                                                                                                                                       >  1:67385/1‑151 (MQ=255)
         aaaaaaGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCacac                                                                                                                                     >  2:223784/1‑151 (MQ=255)
         aaaaaaGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCacac                                                                                                                                     >  1:17278/1‑151 (MQ=255)
          aaaaaGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACAcc                                                                                                                                    >  2:278222/1‑151 (MQ=255)
              aGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTa                                                                                                                                <  1:96727/151‑1 (MQ=255)
                 cAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCt                                                                                                                             >  2:154505/1‑151 (MQ=255)
                      ttGCTACGCGATTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGTACCACAATCACACCATTACCTAAcc                                                                                                                         >  1:573192/1‑150 (MQ=255)
                       tGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCa                                                                                                                        <  1:366817/150‑1 (MQ=255)
                              cgcTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGt                                                                                                                >  2:11392/1‑151 (MQ=255)
                                    gatgaAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGat                                                                                                           >  2:300908/1‑150 (MQ=255)
                                       gaAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGAtatt                                                                                                        <  2:19051/150‑1 (MQ=255)
                                       gaAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGAtatt                                                                                                        >  2:381531/1‑150 (MQ=255)
                                       gaAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGAtatt                                                                                                        <  2:746930/150‑1 (MQ=255)
                                         aaaTGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATc                                                                                                     <  1:289148/151‑1 (MQ=255)
                                             ggCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGttt                                                                                                 <  2:312487/151‑1 (MQ=255)
                                              gCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTc                                                                                                <  1:635712/151‑1 (MQ=255)
                                                 aCATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTcgcc                                                                                             <  1:21147/151‑1 (MQ=255)
                                                 aCATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTcacc                                                                                             >  1:198712/1‑151 (MQ=255)
                                                  cATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTcacc                                                                                             >  2:611640/1‑150 (MQ=255)
                                                    tttGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTcaccac                                                                                           >  1:277403/1‑150 (MQ=255)
                                                     ttGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACcaca                                                                                          <  1:534866/150‑1 (MQ=255)
                                                      tGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAgg                                                                                        >  2:84966/1‑151 (MQ=255)
                                                      tGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAgg                                                                                        >  1:572648/1‑151 (MQ=255)
                                                               cAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTc                                                                               >  2:401619/1‑151 (MQ=255)
                                                                   cATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCAt                                                                           >  2:19206/1‑151 (MQ=255)
                                                                       tCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAggg                                                                       >  1:564071/1‑151 (MQ=255)
                                                                           caacaaGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTgg                                                                   >  1:50704/1‑151 (MQ=255)
                                                                           caacaaGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTgg                                                                   <  2:737532/151‑1 (MQ=255)
                                                                               aaGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGAtct                                                               >  2:503910/1‑151 (MQ=255)
                                                                                 gCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTca                                                             <  1:170314/151‑1 (MQ=255)
                                                                                     gTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACaa                                                          >  1:493023/1‑150 (MQ=255)
                                                                                       ttAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACg                                                       >  1:623633/1‑151 (MQ=255)
                                                                                            aactCCTGCTGAAGAAAAAAATGGCTGTTACAACTATATATTGTCCTACCCGGGTACCATAACCACAACATAACCTAACCAACAAGCATTAGATATAATCGTTGCACAAAAGGCGATCATTCCCATACAGTCGGATCTCACAAACgcagct                                                  <  1:299045/148‑2 (MQ=255)
                                                                                             aTTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACgcagca                                                  >  1:486473/1‑150 (MQ=255)
                                                                                                    cTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGAt                                                                                    >  1:118884/1‑109 (MQ=255)
                                                                                                    cTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGAt                                                                                    <  2:118916/109‑1 (MQ=255)
                                                                                                     tGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACtggtgg                                          >  2:540686/1‑150 (MQ=255)
                                                                                                     tGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACtggtgg                                          >  1:415774/1‑150 (MQ=255)
                                                                                                       aagaaAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGaa                                        >  2:496154/1‑150 (MQ=255)
                                                                                                       aagaaAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAAc                                       >  1:9714/1‑151 (MQ=255)
                                                                                                          aaaaaaaTGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTGCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAg                                     <  1:679176/150‑1 (MQ=255)
                                                                                                            aaaaaTGGCTGTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAgctg                                  >  2:650966/1‑151 (MQ=255)
                                                                                                                      gTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTa                          <  1:650908/149‑1 (MQ=255)
                                                                                                                      gTTACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTa                          <  2:583955/149‑1 (MQ=255)
                                                                                                                       ttACGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAac                       >  2:37944/1‑151 (MQ=255)
                                                                                                                         aCGACTATATATTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAact                      <  2:660908/150‑1 (MQ=255)
                                                                                                                              tatataTTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAACTActctc                >  2:250963/1‑151 (MQ=255)
                                                                                                                               atatatTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAACTActctc                <  2:423828/150‑1 (MQ=255)
                                                                                                                                tatatTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAACTActctct               >  1:108074/1‑150 (MQ=255)
                                                                                                                                tatatTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAACTACTCTCtg              >  1:49166/1‑151 (MQ=255)
                                                                                                                                  tatTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAACTACTCTCtgat            >  2:48105/1‑151 (MQ=255)
                                                                                                                                   atTGTCCTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAACTACTCTCtgatg           >  2:291764/1‑151 (MQ=255)
                                                                                                                                      gTCCTACCTGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAACTACTCTCTGATGagc        >  1:220705/1‑151 (MQ=255)
                                                                                                                                         cTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAACTACTCTCTGATGagcagc     >  1:189137/1‑151 (MQ=255)
                                                                                                                                         cTACCCGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAACTACTCTCTGATGagcagc     >  2:166580/1‑151 (MQ=255)
                                                                                                                                            cccGGGCACCACAAACACACCATTACCTAACCAGGAAGCATTAGATATTATCGTTTCTCCACAGGCCATCATTCCCAAGGGGGTCGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAACTACTCGCTGATGagcagtc    <  1:236134/149‑3 (MQ=255)
                                                                                                                                             ccGGGCACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAACTACTCTCTGATGAGCAGCCGt  >  1:712271/1‑150 (MQ=255)
                                                                                                                                                  |                                                                                                                                                
AATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGTCCTACCCGGGTACCACAATCACACCATTACCTAACCAGGAAGCGTTAGATATTATCGTTTCACCACAGGCGATCATTCCCATAGGGTTGGATCTCACAAACGCAGCAACTGGTGGAACAGCTGCGCTGCTAAACTACTCTCTGATGAGCAGCCGT  >  NC_000913/3363005‑3363295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A