Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F50 I2 R1
|
173 |
150.8 |
4954114 |
96.5% |
4780720 |
150.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,003,303 |
A→G |
R292R (CGT→CGC) |
rarD ← |
putative chloramphenical resistance permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,003,303 | 0 | A | G | 99.4%
| 574.0
/ NA
| 157 | R292R (CGT→CGC) | rarD | putative chloramphenical resistance permease |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (95/60); minor base C (1/0); total (97/60) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
Only 100 of 157 total aligned reads displayed.
ATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAA > NC_000913/4003156‑4003449
|
ccttAGATGTTGGGATAAATATACTTTACATAAATTTTACCTCCCTGTATGAGTCCCCTGGCAGCATGGAAATATTCCCACTCTCATGCAAGAATCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGta < 1:737003/148‑1 (MQ=255)
ttAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGtata > 1:962210/1‑150 (MQ=255)
tAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATaa > 1:738516/1‑150 (MQ=255)
aGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAAt > 1:439695/1‑151 (MQ=255)
gATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATc > 4:1148462/1‑151 (MQ=255)
gATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATc < 1:8799/151‑1 (MQ=255)
tGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGcatc > 4:700346/1‑151 (MQ=255)
tGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGcatc > 2:339656/1‑151 (MQ=255)
gggATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGATTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTTGGCTGCGTATAAATCGcatcc > 3:160063/1‑151 (MQ=255)
gggATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGcatcc < 1:1309032/151‑1 (MQ=255)
gggATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGcatc < 4:1444293/150‑1 (MQ=255)
aaaTATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATca < 1:640186/150‑1 (MQ=255)
aaTATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATcaca < 1:1157974/151‑1 (MQ=255)
atatACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATcaca > 4:720693/1‑150 (MQ=255)
tataCGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTCCTGCGTTGCGTATAAATCGCATCCATCACaa > 1:10569/1‑150 (MQ=255)
ataCGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACaaa > 1:408579/1‑150 (MQ=255)
ataCGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACaaa > 4:1140813/1‑150 (MQ=255)
ataCGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACaaa < 4:1297023/150‑1 (MQ=255)
taCGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACaaaa > 1:196064/1‑150 (MQ=255)
aCGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTGTGCGCTGCGTATAAATCGCATCCATCACaaaaa < 4:1475121/150‑1 (MQ=255)
aaaTTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAgcgc > 4:974414/1‑151 (MQ=255)
aaTTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGcc > 2:412503/1‑151 (MQ=255)
ttttACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCAc > 4:1240344/1‑151 (MQ=255)
tACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCAccc > 4:491954/1‑150 (MQ=255)
tACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCAccc > 1:1254450/1‑150 (MQ=255)
tACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCAccc > 1:908142/1‑150 (MQ=255)
tACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATACATCACAAAAATTGCCAGCGCCAccc > 4:1201324/1‑150 (MQ=255)
cATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCaa > 3:437651/1‑150 (MQ=255)
cTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATaa > 3:368306/1‑150 (MQ=255)
tGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAg < 1:1579021/150‑1 (MQ=255)
aTGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAgggg < 1:1020670/150‑3 (MQ=255)
aTGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGa < 4:439852/151‑1 (MQ=255)
gAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGaa < 1:1759084/150‑1 (MQ=255)
aGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGaa > 1:518532/1‑149 (MQ=255)
cAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCtt > 2:29143/1‑151 (MQ=255)
gCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTAt < 1:1582697/151‑1 (MQ=255)
cATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATc > 1:761822/1‑151 (MQ=255)
cATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATc > 4:1380198/1‑151 (MQ=255)
cATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATc > 4:1275364/1‑151 (MQ=255)
gCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGGCGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCa < 3:44799/151‑1 (MQ=255)
aaTATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCAcc > 1:1471223/1‑151 (MQ=255)
atatGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCAccc < 4:148441/151‑1 (MQ=255)
atGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCgg < 1:1202038/151‑1 (MQ=255)
gCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGtt < 1:1534716/151‑1 (MQ=255)
cccACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGttt < 1:1492268/151‑1 (MQ=255)
cccACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGttt < 2:429145/151‑1 (MQ=255)
ccACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGtttt < 1:1467784/151‑1 (MQ=255)
cACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGttttt > 4:518971/1‑151 (MQ=255)
ctctCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTc < 4:1609552/150‑1 (MQ=255)
tctcATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCAc > 1:833833/1‑151 (MQ=255)
gCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATaa > 2:248430/1‑150 (MQ=255)
gCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATaa > 4:1694837/1‑150 (MQ=255)
cAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATaaaa < 4:1502871/151‑1 (MQ=255)
aaGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAAc > 3:182564/1‑151 (MQ=255)
agagTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTCCGCGGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAATTAAAGGCGAAAGTCACCATCTTATCGGCCCCCGGTTTTTCACCATAAAAc > 3:517934/1‑150 (MQ=255)
gTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTca < 4:402108/151‑1 (MQ=255)
cGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTcac > 4:1502299/1‑150 (MQ=255)
ggCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTcac > 4:725908/1‑149 (MQ=255)
gCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCAcagc > 1:1719113/1‑151 (MQ=255)
atTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCAcagccag < 1:928471/150‑1 (MQ=255)
tttttCAGAATATATTTATTTTTTATTTGGCCGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCcagca < 4:242885/150‑1 (MQ=255)
tttttCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCAcagccagc > 3:38134/1‑149 (MQ=255)
tttttCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCAcagccagc > 4:1551672/1‑149 (MQ=255)
tttttCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCAcagccagc > 4:1844535/1‑149 (MQ=255)
tttttCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCAcagccagc > 2:196554/1‑149 (MQ=255)
tttttCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCcagca < 4:1770108/150‑1 (MQ=255)
tttCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAgg < 4:738838/150‑1 (MQ=255)
ttCAGACTATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGa > 2:163948/1‑150 (MQ=255)
ttCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGa > 1:987534/1‑150 (MQ=255)
tCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAAc > 1:788528/1‑151 (MQ=255)
tCAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAAc > 1:229504/1‑151 (MQ=255)
cAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAAc < 4:1653745/150‑1 (MQ=255)
cAGAATATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAAc > 4:1661104/1‑150 (MQ=255)
aaTATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATc > 4:1151519/1‑150 (MQ=255)
aaTATATTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATc > 1:658161/1‑150 (MQ=255)
tatatTTATTTTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGc > 4:561786/1‑151 (MQ=255)
atttatttTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGt < 1:1316015/150‑1 (MQ=255)
atttatttTTTATTTGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTc < 3:412489/151‑1 (MQ=255)
ttattttttatttGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCgg > 1:54879/1‑151 (MQ=255)
attttttatttGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCGCCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCg < 1:1878544/148‑1 (MQ=255)
attttttatttGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCggg < 1:321512/150‑1 (MQ=255)
attttttatttGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGc > 4:1080796/1‑151 (MQ=255)
ttttatttGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCa > 4:1612227/1‑150 (MQ=255)
ttatttGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATg > 3:61408/1‑151 (MQ=255)
ttatttGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATg > 3:15391/1‑151 (MQ=255)
tatttGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGt > 1:900571/1‑151 (MQ=255)
atttGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGt < 1:700044/150‑1 (MQ=255)
atttGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGt > 1:932531/1‑150 (MQ=255)
atttGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTa < 1:747156/151‑1 (MQ=255)
tttGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTAc > 4:37549/1‑151 (MQ=255)
tttGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTAc > 3:330003/1‑151 (MQ=255)
tGGACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTg > 1:1062929/1‑151 (MQ=255)
ggACGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTg < 4:248819/150‑1 (MQ=255)
aCGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGa > 3:194754/1‑150 (MQ=255)
aCGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGa > 2:521308/1‑150 (MQ=255)
cGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCTCCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGAGCCAATGTACTGGaa < 1:1439091/150‑1 (MQ=255)
cGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGaa > 1:550505/1‑150 (MQ=255)
cGTTCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGaa > 3:337625/1‑150 (MQ=255)
ttCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGaaaa > 1:3895/1‑150 (MQ=255)
tCTGCGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGaaaaa < 4:578491/150‑1 (MQ=255)
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ATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAA > NC_000913/4003156‑4003449
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
