Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F50 I3 R1 168 141.0 4346284 99.6% 4328898 150.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,097,218 (G)7→8 intergenic (+389/+347) ycdU → / ← serX putative inner membrane protein/tRNA‑Ser

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,097,2111.G88.9% 75.6 / 8.7 45intergenic (+382/+354)ycdU/serXputative inner membrane protein/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base . (4/1);  new base G (7/33);  total (11/34)
Fisher's exact test for biased strand distribution p-value = 9.56e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGT  >  NC_000913/1097065‑1097306
                                                                                                                                                      |                                                                                                
cAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑gggg                                                                                             <  2:1430374/151‑1 (MQ=33)
cAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑ggg                                                                                              <  2:823144/150‑1 (MQ=33)
 aGCCCGCTCACTGCGTTCACGGTCTGTCCATCTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑ggggg                                                                                            <  2:1333875/151‑1 (MQ=18)
 aGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑ggggg                                                                                            <  1:256206/151‑1 (MQ=33)
  gCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑gggggg                                                                                           <  1:549312/151‑1 (MQ=33)
   cccGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑ggggggg                                                                                          >  1:27144/1‑151 (MQ=33)
     cGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑gggggggga                                                                                        <  1:2112491/151‑3 (MQ=18)
     cGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑gggggggg                                                                                         >  1:1164071/1‑149 (MQ=18)
      gCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑g‑‑ggggggggg                                                                                        >  2:318438/1‑148 (MQ=18)
       cTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑ggggggg                                                                                          <  2:2102308/147‑1 (MQ=33)
        tCACTGCGTTCACGGTCTGTCCAACTGGTTGTCGCCTGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑GGGGGGGa                                                                                         <  2:613757/147‑1 (MQ=18)
         cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGG‑T‑A‑‑gggggggg                                                                                         >  2:1607332/1‑145 (MQ=18)
          aCTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGG‑G‑A‑‑gggggggggttga                                                                                    >  1:1715407/1‑144 (MQ=16)
            tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑tggggggggtgg                                                                                     >  2:232129/1‑142 (MQ=16)
             gCGTTCACGGTCTGTCCATCTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACtcg                                                                                 <  2:619682/151‑1 (MQ=16)
             gCGTTCACGGTCTGTCCATCTGGCTGTCGCCAGTTGTCGACCCCAGGTCGGGGCTTCTCAGCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑ggggggggattg                                                                                     <  2:202796/146‑6 (MQ=255)
             gCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCTGG‑G‑A‑‑aggggggggtgt                                                                                     >  2:923261/1‑141 (MQ=255)
               gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACtcgct                                                                               <  1:1213774/151‑1 (MQ=18)
                ttCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑g‑‑gggggggggttga                                                                                    >  1:409334/1‑138 (MQ=16)
                 tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACtcgctt                                                                              <  1:1850133/150‑1 (MQ=18)
                  cACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑gggggggggttgacc                                                                                  >  2:782028/1‑136 (MQ=16)
                   aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACtcgcttcgc                                                                           <  1:1263856/151‑1 (MQ=18)
                    cGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACtcgcttcgct                                                                          <  1:884330/151‑1 (MQ=18)
                     ggTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGGTTGACtccct                                                                               >  2:1764644/1‑145 (MQ=255)
                     ggTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACtcgcttc                                                                             <  2:1960289/147‑1 (MQ=18)
                      gTCTGTCCAACTGGCTGTCGCCAGTTCTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTtcgctc                                                                         <  2:1144041/151‑1 (MQ=255)
                         tGTCCTACTGGCGGTCGCCAGTTGTCGACCCCAGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTtcgctc                                                                         <  2:342932/147‑1 (MQ=255)
                          gcccAACTGGCTGTCGCCTGTTCTCCACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCt                                                                    <  2:489235/149‑1 (MQ=11)
                              aaCTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGG‑G‑‑GGGGGGGGTTCACGCACTCCGCCCCCCCTGCgg                                                                >  1:1694102/1‑151 (MQ=11)
                              aaCTGGCTGTCGACAGTTGTCGACCCCCACACGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACtcgcttcgct                                                                          <  2:1995558/141‑1 (MQ=11)
                                  ggCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGc                                                              <  2:1262772/149‑1 (MQ=18)
                                   gCTGTCGCCTGTCGTCGGCCCCAAGTCGGGGGTTCTCAGCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCggg                                                               <  2:1914768/147‑1 (MQ=11)
                                            aGTTGTCGACCCCAGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACt                                                  <  2:1005288/151‑1 (MQ=16)
                                              tcgccGACCCCAGAACGGGGCGTCTCGGCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTg                                                 <  2:738227/146‑1 (MQ=11)
                                                gTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGt                                              <  1:1556561/151‑1 (MQ=18)
                                                 tCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGG‑G‑‑GGGGGGGGTTAATTCGCTTCCCTCGCCCCGCGGGGAGcccccccccctcct                                              >  1:1107898/1‑139 (MQ=11)
                                                   gACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGGTTGACCCCCTCCCCCCCCCCTCCGGGCGGccccccccc                                                   >  2:801287/1‑137 (MQ=11)
                                                    aCCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGA‑G‑AGGGGGGGGGAATGACTCACCTCCCGCCCCCCGCGGGCAGCCCGCTCGCCGTGTTct                                           >  1:300358/1‑150 (MQ=11)
                                                     cccccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCAc                                          <  1:1236826/150‑1 (MQ=17)
                                                       cccGGTCGGGGCTGCTCGTGCCCCCGGTGTGTGCAAAACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCAc                                          <  2:1588474/148‑1 (MQ=11)
                                                        ccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTc                                      <  1:318439/151‑1 (MQ=14)
                                                         cGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGGTTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCCCCCTGCGttgccgg                                        >  1:443953/1‑143 (MQ=11)
                                                          ggTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTg                                    <  1:1410834/151‑1 (MQ=14)
                                                              ggggCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGC‑G‑AG‑GGGGGGGGTTGACTCCCTTTGCCCCCCCTCCGGGCAGCCCCCCCCCCGCGTTCCCGGGCTGTcc                                 >  1:773798/1‑150 (MQ=11)
                                                                      tcATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCGTGTTTAAATATGGCGGT‑A‑AG‑GGGGGGGGGTGGCCCGCTCCTTTCGCCCCGCGGGGAGGCCCCCCCCTGGGTTCACGGGCTTTcccaatt                            >  2:318718/1‑142 (MQ=2)
                                                                        aTCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTc                      <  1:426720/151‑1 (MQ=14)
                                                                          ccccccGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCg                     <  1:2058239/150‑1 (MQ=14)
                                                                            ccccGGTGTTTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTc                      <  2:1151080/147‑1 (MQ=9)
                                                                            ccccGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑GCG‑‑GGGGGGGATTGACCCCCTTCGCTCGCCCTCCGGGCAGCCCCCCCCCTGCGTTCACGGTCTGTCCCACTGGCTTTTGccc                  >  1:1404346/1‑150 (MQ=11)
                                                                              ccGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGt                <  1:1355798/151‑1 (MQ=14)
                                                                                ggTGTGTTCAATACACG‑GAAAAAAAGGCCGTTCTTTCGTTCGAGCCCTTCCTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTg              <  2:1677535/151‑1 (MQ=11)
                                                                                ggTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTg              <  1:1155076/151‑1 (MQ=14)
                                                                                    tgtgCAATACACG‑AAAAAAAAGCCCGTTCTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCg           <  2:221110/150‑1 (MQ=9)
                                                                                     gtgCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGaa         <  1:1248192/151‑1 (MQ=14)
                                                                                      tgCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTc            <  2:632954/147‑1 (MQ=14)
                                                                                      tgCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGaa         <  1:279836/150‑1 (MQ=14)
                                                                                         aaTACATG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAAcccc     <  2:1564573/151‑1 (MQ=9)
                                                                                          aTACACG‑AAAAAAAAGCCCGTACTTTCGTTCGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCg    <  2:396654/151‑1 (MQ=9)
                                                                                          aTACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑GAA‑‑GGGGGGGATTGACTCCCTTTCCCCCCCCCCCGGGCAGCCCGCCCCCTGCTGTTACGGGCTTTCCAATCGGCGTTCGCCCGTTGTCGAAaccc     >  1:50726/1‑150 (MQ=2)
                                                                                          aTACAAG‑AAAAAAAAAGCCGTTCTTTCGTACGGGGTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCg    <  2:67157/151‑1 (MQ=11)
                                                                                            acacG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGt  <  1:923694/151‑1 (MQ=14)
                                                                                             cacG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑AG‑GGGGGGGGTTTACTCGCTTCCTCCCCCCCCCGGGGGGCCCCCCCCCCGGGGTCACGGGCTGTCCCCCCGGCCGGCGCCCGGTTTCGAAcccc     >  2:195104/1‑147 (MQ=2)
                                                                                                                                                      |                                                                                                
CAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACG‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGT‑G‑A‑‑GGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGT  >  NC_000913/1097065‑1097306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A