Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,479,952 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,479,9520AT99.2% 614.9 / ‑4.6 259intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (145/112);  minor base G (0/2);  total (145/114)
Fisher's exact test for biased strand distribution p-value = 1.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,479,9530CG99.6% 614.9 / NA 259intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base G (145/113);  total (145/114)
Fisher's exact test for biased strand distribution p-value = 4.40e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.37e-01
*CP0425831,479,9540TA100.0% 624.4 / NA 259intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (145/114);  total (145/114)

Only 100 of 259 total aligned reads displayed.

GCGATCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAAACTACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAAAGAAGTTACGCAGGAAGTCGTGCAGCGTGCCTTTCAGGTTGGT  >  CP042583/1479677‑1480233
                                                                                                                                                                                                                                                                                   |||                                                                                                                                                                                                                                                                                       
  gATCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGGAGACCGTTTTCGAAGAATGAACGCAGGTCGGTg                                                                                                                                                                                                                                                                            >  2:1444799/1‑289 (MQ=255)
  gATCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGTTCGGTg                                                                                                                                                                                                                                                                            >  1:2138174/1‑289 (MQ=255)
  gATCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTg                                                                                                                                                                                                                                                                            >  2:769092/1‑289 (MQ=255)
     cgccgcCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACg                                                                                                                                                                                                                                                                         <  1:1387115/289‑1 (MQ=255)
        cgccgACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGCCCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCg                                                                                                                                                                                                                                                                      <  1:477233/289‑1 (MQ=255)
                ttCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATCAACGCAGGTCGGTGACGCCGTAACGCaa                                                                                                                                                                                                                                                              <  1:1081219/289‑1 (MQ=255)
                        tGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCa                                                                                                                                                                                                                                                      >  2:1064744/1‑289 (MQ=255)
                          tgcaacGCGGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTACTACACCGTCAACTTCCAGGCCCGCCATAGAGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGa                                                                                                                                                                                                                                                    <  2:261442/285‑1 (MQ=255)
                          tCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGa                                                                                                                                                                                                                                                    <  1:929319/289‑1 (MQ=255)
                           cacaCGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGa                                                                                                                                                                                                                                                    <  1:1698942/288‑1 (MQ=255)
                           cacaCGCAGTTTGTAAGCGTTCGGATGCTGCGCACAATAAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGa                                                                                                                                                                                                                                                    <  2:1697550/288‑1 (MQ=255)
                           cacaCGAAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGAc                                                                                                                                                                                                                                                   <  1:85313/289‑1 (MQ=255)
                               cGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTc                                                                                                                                                                                                                                               <  1:1683560/289‑1 (MQ=255)
                                  cgTTTGGCAGCGTTCGGATGCTGCGCACACCCAACCCCTTCCCCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTaa                                                                                                                                                                                                                                                                   <  2:792926/265‑1 (MQ=255)
                                     ttGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTccatccc                                                                                                                                                                                                                                         <  2:1347017/289‑1 (MQ=255)
                                        tCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTccatcccca                                                                                                                                                                                                                                       >  1:2110211/1‑288 (MQ=255)
                                            cGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTccatc                                                                                                                                                                                                                                           >  1:172869/1‑280 (MQ=255)
                                              ttCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGaa                                                                                                                                                                                                                                >  1:2160853/1‑289 (MQ=255)
                                              ttCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAAAGCAGATCGTTTTCGAAGAATGAACGCAGGTCGTTGACGCCGTAACGCAACATATGCAGACGCTCCATACCCATCCCGac                                                                                                                                                                                                                                >  2:444886/1‑288 (MQ=255)
                                                         cgcACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACg                                                                                                                                                                                                                                                  >  1:2188606/1‑260 (MQ=255)
                                                         cgcACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTccatcc                                                                                                                                                                                                                                          >  1:2254275/1‑268 (MQ=255)
                                                             cacTAAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTa                                                                                                                                                                                                                 <  1:1540899/289‑1 (MQ=255)
                                                                        ttcccccccgcccgcGCCGTGGAACCTGCCGGCAACCGGTTCTACACCGTAAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGt                                                                                                                                                                                                      <  2:620509/275‑1 (MQ=255)
                                                                        ttCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAAAGTAAACTTCCggg                                                                                                                                                                                                       >  2:2207215/1‑288 (MQ=255)
                                                                          cACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTcc                                                                                                                                                                                                                                              >  2:2237143/1‑247 (MQ=255)
                                                                          cACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCg                                                                                                                                                                                                    >  1:1027916/1‑289 (MQ=255)
                                                                                  aCCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAAc                                                                                                                                                                                            >  1:1895487/1‑289 (MQ=255)
                                                                                   ccACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTACGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACg                                                                                                                                                                                           <  1:369188/289‑1 (MQ=255)
                                                                                                taccgtggCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGt                                                                                                                                                                              >  1:1574900/7‑289 (MQ=255)
                                                                                                 cTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGACACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGt                                                                                                                                                                              >  2:1857500/1‑288 (MQ=255)
                                                                                                 cTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGc                                                                                                                                                                                                >  1:2007936/1‑270 (MQ=255)
                                                                                                 cTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGc                                                                                                                                                                                                <  2:2007936/270‑1 (MQ=255)
                                                                                                  ggCCGGCACCGGGTCCTACACCTTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCTCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTc                                                                                                                                                                            <  2:2218938/288‑1 (MQ=255)
                                                                                                     cGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGa                                                                                                                                                                         <  1:2207215/289‑1 (MQ=255)
                                                                                                              gTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCAt                                                                                                                                                                 >  1:1334222/1‑288 (MQ=255)
                                                                                                                tCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTACTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATcc                                                                                                                                                               <  1:1913177/288‑1 (MQ=255)
                                                                                                                 cTACCCCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCg                                                                                                                                                             <  1:1280979/289‑1 (MQ=255)
                                                                                                                    cacCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCgg                                                                                                                                                                          >  1:806659/1‑273 (MQ=255)
                                                                                                                    aagagactgcgtCCAGGCCCGCACTAGTGATTTGATTTGCCAGCGCATCACTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAg                                                                                                                                                          <  2:2139010/278‑1 (MQ=255)
                                                                                                                      ccGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGc                                                                                                                                                         >  2:1564042/1‑288 (MQ=255)
                                                                                                                         tCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTa                                                                                                                                                                                                                 >  1:582374/1‑229 (MQ=255)
                                                                                                                         tCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTa                                                                                                                                                                                                                 <  2:582374/229‑1 (MQ=255)
                                                                                                                         tCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTc                                                                                                                                                                                                     >  2:2111776/1‑241 (MQ=255)
                                                                                                                         tCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTAc                                                                                                                                                                                       >  2:559211/1‑255 (MQ=255)
                                                                                                                         tCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTAc                                                                                                                                                                                       <  1:559211/255‑1 (MQ=255)
                                                                                                                         tCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCa                                                                                                                                                      >  2:680425/1‑288 (MQ=255)
                                                                                                                                ccAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTcc                                                                                                                                              <  1:680425/289‑1 (MQ=255)
                                                                                                                                   ggCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAg                                                                                                                                            >  1:1847591/1‑288 (MQ=255)
                                                                                                                                     cccGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCa                                                                                                                                                                  <  2:1243504/264‑1 (MQ=255)
                                                                                                                                         ccATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCa                                                                                                                                                                  >  1:2172552/1‑260 (MQ=255)
                                                                                                                                          cATAGTGATTTAATTTTCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTAc                                                                                                                                    <  1:54766/289‑1 (MQ=255)
                                                                                                                                                gatttgagttGCCAGCGAATTGCTAGCAATCGCCGGGTTCACACATTCGCGTAACCACAGTTAACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGttt                                                                                                                               <  1:973358/288‑1 (MQ=255)
                                                                                                                                                      atttgCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCa                                                                                                                        >  2:1285344/1‑289 (MQ=255)
                                                                                                                                                       tttgCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACg                                                                                                                                                                               >  2:1035870/1‑233 (MQ=255)
                                                                                                                                                        ttgCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATg                                                                                                                      <  1:398455/289‑1 (MQ=255)
                                                                                                                                                                gcATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCa                                                                                                               <  2:1462208/288‑1 (MQ=255)
                                                                                                                                                                         tCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGa                                                                                                     >  1:951147/1‑289 (MQ=255)
                                                                                                                                                                            aTCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTAc                                                                                                                                    >  1:1009827/1‑255 (MQ=255)
                                                                                                                                                                            aTCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg                                                                                                  <  2:1574900/289‑1 (MQ=255)
                                                                                                                                                                                ccGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCg                                                                                                                                                             <  1:26710/226‑1 (MQ=255)
                                                                                                                                                                                 cGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGACGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATCCACCATCCCGCAGCCCAGCACTCCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCgg                                                                                             >  1:1500892/1‑289 (MQ=255)
                                                                                                                                                                                   ggTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGt                                                                                            <  2:166123/288‑1 (MQ=255)
                                                                                                                                                                                             ttCGCGGAACCACAGTTCACTGAATTTCATAATCTATGACTGCCTTATTTAAACTGTGTGAGGAAACGCATATAGGTTTCGAAGGATGAACGCAGGTCGGGGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGt                                                                                 <  2:1197960/289‑1 (MQ=255)
                                                                                                                                                                                                gcgTAACCCCAGTTCACTTAATTTAATAATCTATTCCTGCCTTATGTCAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTagg                                                                              <  2:1102931/289‑1 (MQ=255)
                                                                                                                                                                                                    aaCCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCg                                                                                                                                                             >  2:405730/1‑206 (MQ=255)
                                                                                                                                                                                                    aaCCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCg                                                                                                                                                             <  1:405730/206‑1 (MQ=255)
                                                                                                                                                                                                            ttCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGc                                                                  >  1:1465751/1‑289 (MQ=255)
                                                                                                                                                                                                              ccctaaaTTTCCTAAACTATTGCTGCCTTATTTAAACTGTTGGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGa                                                                <  2:390512/284‑1 (MQ=255)
                                                                                                                                                                                                               aCTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGa                                                                                                                                                                                                                                                    >  2:299548/1‑108 (MQ=255)
                                                                                                                                                                                                               aCTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATg                                                                                                                                                                       >  1:619848/1‑185 (MQ=255)
                                                                                                                                                                                                                 tGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCa                                                                                                                                                                     <  2:2167423/185‑1 (MQ=255)
                                                                                                                                                                                                                    aTTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGc                                                          >  2:1736167/1‑289 (MQ=255)
                                                                                                                                                                                                                      ttCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGTAAGTAGGAAGGACGGAAGCGAATCTGCaa                                                        >  2:1519050/1‑289 (MQ=255)
                                                                                                                                                                                                                        cATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCaaa                                                       >  2:180356/1‑288 (MQ=255)
                                                                                                                                                                                                                        cATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAAt                                                      >  2:654424/1‑289 (MQ=255)
                                                                                                                                                                                                                        cATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTCCTCCAGAAGGGTCGGTAAACTGGAAGTAGGAAGGAAGGAAGCGaagttggaaa                                                       >  2:2080929/1‑280 (MQ=255)
                                                                                                                                                                                                                                  tCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGa                                                                <  1:165506/269‑1 (MQ=255)
                                                                                                                                                                                                                                   ccTGCCTTATTTAAACTTTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAaag                                           <  1:774351/289‑1 (MQ=255)
                                                                                                                                                                                                                                       ccTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTc                                                                                                                                                                                                     >  1:1708100/1‑131 (MQ=255)
                                                                                                                                                                                                                                       ccTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGa                                                                                    <  1:1230991/244‑1 (MQ=255)
                                                                                                                                                                                                                                       ccTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAAAGAAGt                                       >  1:1105111/1‑289 (MQ=255)
                                                                                                                                                                                                                                           aTTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAAAGAAGTTAc                                    >  1:1443799/1‑288 (MQ=255)
                                                                                                                                                                                                                                                 aCTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCATTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAAAGAAGTTACGCAGGaa                             >  2:239887/1‑289 (MQ=255)
                                                                                                                                                                                                                                                 aCTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCATTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAAAGAAGTTACGCAGGaa                             >  2:293893/1‑289 (MQ=255)
                                                                                                                                                                                                                                                 aCTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg                                                                                                  >  2:2173617/1‑220 (MQ=255)
                                                                                                                                                                                                                                                 aCTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAgg                                                                                                  <  1:2173617/220‑1 (MQ=255)
                                                                                                                                                                                                                                                 aCTGTTTGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAAAGAAGTTACGCAGGaa                             >  2:1714123/1‑289 (MQ=255)
                                                                                                                                                                                                                                                     tttGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTTCAAATCTTCCTCAAAGAAGTTACGAAGGacgacg                         >  2:1888299/1‑284 (MQ=255)
                                                                                                                                                                                                                                                     tttGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAAAGAAGTTACGCAGGAAGTCg                         >  2:1185963/1‑289 (MQ=255)
                                                                                                                                                                                                                                                      ttGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAAAGAAGTTACGCAGGAAGTCGt                        >  1:319703/1‑289 (MQ=255)
                                                                                                                                                                                                                                                      ttGAGGAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAAAGAAGTTACGCAGGAAGTCGt                        >  2:2043787/1‑289 (MQ=255)
                                                                                                                                                                                                                                                          ggAAACGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAAAGAAGTTACGCAGGAAGTCGTGCa                     >  1:1801088/1‑288 (MQ=255)
                                                                                                                                                                                                                                                               cGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCACATCTTCCTCAAAGAAGTTACGCAGGAAGCCGTGAAGCGTg                >  2:1382114/1‑288 (MQ=255)
                                                                                                                                                                                                                                                               cGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAAAGAAGTTACGAAGGAAGTCGGGCAGCGTg                >  1:1267622/1‑288 (MQ=255)
                                                                                                                                                                                                                                                               cGCAGATCGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAACAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTACACGGGAAGTAGGAAGGACGGAAGCGAATCGGCAAATCTTCCTAAAAGAAGTTACGCAGGAAGGCGGCAAGCGTg                >  2:867412/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                      cGTTTTCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAg                                                                                                                                                          <  1:1456825/143‑1 (MQ=255)
                                                                                                                                                                                                                                                                        ttttCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGc                                                          >  2:1898363/1‑237 (MQ=255)
                                                                                                                                                                                                                                                                          ttCGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTGAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAAc                                                                                        >  1:2231240/1‑205 (MQ=255)
                                                                                                                                                                                                                                                                            cGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAAAGAAGTTACGCAGGAAGTCGTGCAGCGTGCCTTTCAGGTTGGt  <  1:733260/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                            cGAAGAATGAACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAAAGAAGTTACGCAGGAAGTCGTGCAGCGTGCCTTTCAGGTTGGt  <  1:2026761/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                   |||                                                                                                                                                                                                                                                                                       
GCGATCGCCGCCGACATTCACTTTTGTCACACGCAGTTTGTCAGCGTTCGGATGCTGCGCACACTCAACCACTTCACCAACGACCACGCCGTGGAAGCTGCCGGCAACCGGTTCTACACCGTCAACTTCCAGGCCCGCCATAGTGATTTGATTTGCCAGCGCATCGCTATCAATCGCCGGGTTCACCCATTCGCGTAACCACAGTTCACTGAATTTCATAATCTATTCCTGCCTTATTTAAACTGTTTGAGGAAACGCAGATCGTTTTCGAAGAAACTACGCAGGTCGGTGACGCCGTAACGCAACATAGTCAGACGCTCCATCCCCATCCCGAAGGCGAAACCAGAGTAAACTTCCGGGTCGATGCCAACGTTACGCAACACGTTCGGATGCACCATCCCGCAGCCCAGCACTTCCAGCCATTTACCGTTTTTACCCATGACGTCCACTTCTGCAGAAGGTTCGGTAAACGGGAAGTAGGAAGGACGGAAGCGAATCTGCAAATCTTCCTCAAAGAAGTTACGCAGGAAGTCGTGCAGCGTGCCTTTCAGGTTGGT  >  CP042583/1479677‑1480233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A