Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F210 I1 R1 4928 385.2 6658600 97.5% 6492135 231.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,610,364 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,610,3640GC100.0% 797.7 / NA 334intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (165/169);  total (165/169)
*CP0425831,610,3650CG99.7% 795.9 / NA 334intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (164/169);  total (165/169)
Fisher's exact test for biased strand distribution p-value = 4.94e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,610,3660TA100.0% 800.0 / NA 334intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (165/169);  total (165/169)

Only 100 of 334 total aligned reads displayed.

TTTTAGCGGCAAAGACCAGCGCAAGGATCAAACGTGCTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCACTTTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGAGCTGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATT  >  CP042583/1610084‑1610641
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                   
ttttAGCGGCAAAGACCAGCGCAAGGATCAAACGTGCTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGt                                                                                                                                                                                                                                                                               <  1:2501805/289‑1 (MQ=255)
          aaaGACCAGCGCAAGGATCAAACGTGCTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACCAGGGGGTCGAAGAACt                                                                                                                                                                                                                                                                      >  2:434503/1‑288 (MQ=255)
                    gcAAGGATCAAACGTGCTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAATCTGCGGTTCGTCCTGATGCTCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCTCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCACATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGcc                                                                                                                                                                                                                                                              <  1:2464511/286‑1 (MQ=255)
                      aaGGATGACACGGTCTGTGCGGTCGTACAGCGGCGTACTTTGTGGGCCAAACTGGGGTTGGGCATGATGGGCCGCGCGAATTTTATCTTTGTATTTATGCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACAAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCTGCCGGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGc                                                                                                                                                                                                                                                         <  2:2574243/289‑1 (MQ=255)
                                 gTGCTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAg                                                                                                                                                                                                                                              <  2:809931/289‑1 (MQ=255)
                                    cTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAGGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTg                                                                                                                                                                                                                                           >  1:227123/1‑289 (MQ=255)
                                    cTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCACTCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGtcg                                                                                                                                                                                                                                           >  1:1331746/1‑287 (MQ=255)
                                    cTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTg                                                                                                                                                                                                                                           >  1:973458/1‑289 (MQ=255)
                                               tCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTGGATTTAACCAGt                                                                                                                                                                                                                                >  1:664370/1‑289 (MQ=255)
                                                         tACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAGGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGcc                                                                                                                                                                                                                                                              <  1:852314/249‑1 (MQ=255)
                                                                   gcCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGGAGAAGAACTGCTTTGCCCAAGCAGGGATTGCCGCTGATTTAACCGTTTACACATATTGTCTCCGCaa                                                                                                                                                                                                            >  2:1161332/1‑289 (MQ=255)
                                                                                tCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTa                                                                                                                                                                                                <  1:446310/288‑1 (MQ=255)
                                                                                tCGGCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTa                                                                                                                                                                                                <  1:2762797/288‑1 (MQ=255)
                                                                                 cGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTag                                                                                                                                                                                                                                                                             <  2:1135032/210‑1 (MQ=255)
                                                                                    ccTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGc                                                                                                                                                                                            <  1:1740802/288‑1 (MQ=255)
                                                                                         tGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGcc                                                                                                                                                                                           <  1:1397120/284‑1 (MQ=255)
                                                                                            gccgcGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCa                                                                                                                                                                                    <  1:2984791/288‑1 (MQ=255)
                                                                                             ccgcGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGAt                                                                                                                                                                                                                                         >  2:1875668/1‑234 (MQ=255)
                                                                                             ccgcGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGcc                                                                                                                                                                                                                           >  1:2959257/1‑248 (MQ=255)
                                                                                             ccgcGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTa                                                                                                                                                                                                <  2:1500253/275‑1 (MQ=255)
                                                                                             ccgcGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCAt                                                                                                                                                                                   >  2:1379996/1‑288 (MQ=255)
                                                                                             ccgcGCGAATATTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTAACATATTTCGTAAGAAGTTTACGTCCTGACCTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCCCTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTTCCCAAGCAGGGATTGCAGATGATTTAACCAGTTAGCCATATTTCCTCCCCAATTACCATTTTTAGTTCCTGTAGCaca                                                                                                                                                                                  >  2:3255164/1‑287 (MQ=255)
                                                                                              cgcgcgAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCa                                                                                                                                                                                                                                                        >  1:2883681/1‑218 (MQ=255)
                                                                                              cgcgcgAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACAATTTTTAGTGCCTGTAGCATa                                                                                                                                                                                  >  2:881017/1‑288 (MQ=255)
                                                                                                cgcgAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTACGACGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCCCAGACGAGGAGGTAGAAGACCTGCTTTGCCCAAGCAGGTATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCCCAATAACCATTTTTAGTGCCTTTTGCATTGCg                                                                                                                                                                               >  2:2311717/1‑289 (MQ=255)
                                                                                                cgcgAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCAGAGCg                                                                                                                                                                               >  1:2690087/1‑289 (MQ=255)
                                                                                                   taaTTTTATCGTTGTAGTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGGCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGCTCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGAt                                                                                                                                                                            <  2:2048163/288‑1 (MQ=255)
                                                                                                       tttATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAgg                                                                                                                                                                        <  1:530210/289‑1 (MQ=255)
                                                                                                                            caGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATc                                                                                                                                                     <  1:1692941/287‑1 (MQ=255)
                                                                                                                            caGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATc                                                                                                                                                     >  2:1692941/1‑287 (MQ=255)
                                                                                                                                  cGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTg                                                                                                                                                                                         >  2:1347327/1‑245 (MQ=255)
                                                                                                                                  cGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACaaa                                                                                                                                             >  2:2143765/1‑289 (MQ=255)
                                                                                                                                  cGTACCCGCTACAGCTCCGCCGCCAACCAGTAACGCGTTGGTGCAATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTg                                                                                                                                                                                         <  1:2177808/245‑1 (MQ=255)
                                                                                                                                    tACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCAt                                                                                                                                                                                   <  1:1441508/249‑1 (MQ=255)
                                                                                                                                    tACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAg                                                                                                                                           >  2:2840539/1‑289 (MQ=255)
                                                                                                                                    tACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGGCAGAAAATGTAAATCGAGACAAAAg                                                                                                                                           >  2:1242076/1‑289 (MQ=255)
                                                                                                                                    tACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCAGATGAGGATGTCAGAAAATGTATATCGAGACAAAAg                                                                                                                                           >  2:1851674/1‑289 (MQ=255)
                                                                                                                                       ccGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTGGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATg                                                                                                                                        <  1:1897695/289‑1 (MQ=255)
                                                                                                                                         gCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTa                                                                                                                                                                                                >  2:362115/1‑231 (MQ=255)
                                                                                                                                         gCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTa                                                                                                                                                                                                <  1:362115/231‑1 (MQ=255)
                                                                                                                                         gCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATgc                                                                                                                                       >  1:3070411/1‑288 (MQ=255)
                                                                                                                                           tACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATc                                                                                                                                                     <  2:180794/272‑1 (MQ=255)
                                                                                                                                              cGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              <  2:3059252/228‑1 (MQ=255)
                                                                                                                                              cGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAAt                                                                                                                                 >  1:2198857/1‑289 (MQ=255)
                                                                                                                                                cTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATaa                                                                                                                               >  1:2373134/1‑289 (MQ=255)
                                                                                                                                                      cgccAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCgggg                                                                                                                         <  1:1172128/289‑1 (MQ=255)
                                                                                                                                                                     cgTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTAt                                                                                                           >  1:2336466/1‑288 (MQ=255)
                                                                                                                                                                       ttGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCa                                                                                                                                    >  1:2644797/1‑261 (MQ=255)
                                                                                                                                                                       ttGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCa                                                                                                        >  2:2469124/1‑289 (MQ=255)
                                                                                                                                                                          gTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTg                                                                                                                                                                                                                                                                >  2:787328/1‑134 (MQ=255)
                                                                                                                                                                          gTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAg                                                                                                                                                                                                                                 <  2:1983923/165‑1 (MQ=255)
                                                                                                                                                                               atatTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAAtt                                                                                                <  1:881017/289‑1 (MQ=255)
                                                                                                                                                                                tatTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTa                                                                                                                                                                                                                                      >  1:3195711/1‑154 (MQ=255)
                                                                                                                                                                                tatTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              <  1:918851/194‑1 (MQ=255)
                                                                                                                                                                                tatTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAg                                                                                                                                                                 >  1:195397/1‑223 (MQ=255)
                                                                                                                                                                                   ttCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTcgcg                                                                                            <  1:1808458/289‑1 (MQ=255)
                                                                                                                                                                                   ttCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCAGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTcgcg                                                                                            <  1:1851674/289‑1 (MQ=255)
                                                                                                                                                                                    tCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGt                                                                                                                                                                                                                                <  1:1781908/156‑1 (MQ=255)
                                                                                                                                                                                    tCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTcgc                                                                                             >  2:3115057/1‑287 (MQ=255)
                                                                                                                                                                                    tCGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTcgc                                                                                             <  1:3115057/287‑1 (MQ=255)
                                                                                                                                                                                     tgTAAGAAGTTTACGTGCTGATTTCTTTGCGAGCCAG‑AGCCCGGCCAGGCCGCCTAAGTGGCCTGGCACTAACAGTTTGACCAATCCCTGGTGCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTGGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGTGACAAAAGTTGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGcc                                                                                          <  2:2757743/288‑1 (MQ=255)
                                                                                                                                                                                     cGTAAGAAGTTTACGTGTTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGcc                                                                                          <  2:2939949/289‑1 (MQ=255)
                                                                                                                                                                                     cGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGt                                                                                                                                                                                                                                <  1:1272301/155‑1 (MQ=255)
                                                                                                                                                                                     cGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGcc                                                                                          <  1:1014478/289‑1 (MQ=255)
                                                                                                                                                                                     cGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGcc                                                                                          <  2:623412/289‑1 (MQ=255)
                                                                                                                                                                                     cGTAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCACCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAg                                                                                                                                                                                                                                              <  2:1144548/141‑1 (MQ=255)
                                                                                                                                                                                       tAAGAAGTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGCAAATGTATATCGAGACAAAAGATGCGCCAATAAGCGGGGCGGTAGGCCGTTAATCACAGAAATTCGCGCCag                                                                                        >  2:691801/1‑289 (MQ=255)
                                                                                                                                                                                         agaagTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCaggt                                                                                      <  2:2656281/289‑1 (MQ=255)
                                                                                                                                                                                           aagTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCaggtaa                                                                                    >  1:804984/1‑289 (MQ=255)
                                                                                                                                                                                             gTTTACGTGCTGATTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCaggtaagg                                                                                  >  1:2605215/1‑289 (MQ=255)
                                                                                                                                                                                                 acgtgctgatttATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGAGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTAtt                                                                              <  2:2230965/280‑1 (MQ=255)
                                                                                                                                                                                                     gctgattttttGGCGA‑CCAGCAGCCCAGCCCATCCGCCTCATGCGCCTGGCACTAACCGTGTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCATGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGATACTCAATAACCATTTTTAGTGCCTGTAGGATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACt                                                                          <  2:1451955/284‑1 (MQ=255)
                                                                                                                                                                                                        gatttATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCaggtaag                                                                                   <  1:120996/275‑1 (MQ=255)
                                                                                                                                                                                                           ttATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTatat                                                                    <  1:2143765/289‑1 (MQ=255)
                                                                                                                                                                                                             aTTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCa                                                                  <  2:2972801/289‑1 (MQ=255)
                                                                                                                                                                                                                   gA‑CCAGCAGCCCCGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGAt                                                            <  1:691801/289‑1 (MQ=255)
                                                                                                                                                                                                                   gA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGAt                                                            >  1:1618376/1‑289 (MQ=255)
                                                                                                                                                                                                                   gA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGAt                                                            <  2:2373134/289‑1 (MQ=255)
                                                                                                                                                                                                                       cagcagCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAGCCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAg                                                         <  2:2622138/289‑1 (MQ=255)
                                                                                                                                                                                                                         gcagcCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTa                                                                            >  1:1358596/1‑268 (MQ=255)
                                                                                                                                                                                                                              ccagccagTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTAtt                                                   <  1:1075047/288‑1 (MQ=255)
                                                                                                                                                                                                                                 gccagTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCaggtaa                                                                                    >  2:2191904/1‑252 (MQ=255)
                                                                                                                                                                                                                                     gTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATAAGGGGAAAAGGGTATTTTAGGTGa                                           >  2:1658707/1‑289 (MQ=255)
                                                                                                                                                                                                                                      tCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTAc                                                                           >  2:1042070/1‑256 (MQ=255)
                                                                                                                                                                                                                                       ccGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCaa                                                                                                                                   <  1:1090831/199‑1 (MQ=255)
                                                                                                                                                                                                                                           cTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAagtag                                     >  1:2001160/1‑289 (MQ=255)
                                                                                                                                                                                                                                                   ccTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              <  2:1080004/128‑1 (MQ=255)
                                                                                                                                                                                                                                                    cTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTcgcg                                                                                            <  2:920315/225‑1 (MQ=255)
                                                                                                                                                                                                                                                              ccggttGACCAGTCCCTGAGCCGCAGACGAGGAGGTAGAATAACTGCTTTGACCAAGCAGGGATTGCAGTTGATTTAACCAGTTCGCCATATTTGCTCCTCAATAAACATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGGGCAAATAAGCGGGGCGGTAGGGCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTTTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCa                  <  2:1206872/285‑1 (MQ=255)
                                                                                                                                                                                                                                                                 tttGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGAt                                                            >  1:1537030/1‑244 (MQ=255)
                                                                                                                                                                                                                                                                   tGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTACGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAGGTAGTTTGTCGTTTTGTGTGCCTTTGtt             >  2:1770739/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                     aCCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCgg                                                                                                                      >  2:2884241/1‑182 (MQ=255)
                                                                                                                                                                                                                                                                     aCCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTg           >  1:33511/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                         aTCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGa                                                                                                                                                                          <  2:1408425/126‑1 (MQ=255)
                                                                                                                                                                                                                                                                         aTCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGAt         >  2:1571999/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                           cccTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCg                                                                                                               >  1:737515/1‑183 (MQ=255)
                                                                                                                                                                                                                                                                           cccTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCg                                                                                                               <  2:737515/183‑1 (MQ=255)
                                                                                                                                                                                                                                                                           cccTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAg                                                         <  1:1135809/237‑1 (MQ=255)
                                                                                                                                                                                                                                                                           cccTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTg     >  2:527430/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                               gATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAATATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGTTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATgtggttt  >  2:129882/1‑282 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                   
TTTTAGCGGCAAAGACCAGCGCAAGGATCAAACGTGCTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCACTTTTATTTGCGA‑CCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGAGCTGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATT  >  CP042583/1610084‑1610641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A