Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,610,364 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,610,3640GC99.6% 535.6 / NA 230intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (112/117);  total (112/118)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,610,3650CG99.6% 540.2 / NA 230intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (111/118);  minor base T (1/0);  total (112/118)
Fisher's exact test for biased strand distribution p-value = 4.87e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,610,3660TA99.6% 540.3 / NA 230intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (111/118);  minor base C (1/0);  total (112/118)
Fisher's exact test for biased strand distribution p-value = 4.87e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 230 total aligned reads displayed.

TTTTAGCGGCAAAGACCAGCGCAAGGATCAAACGTGCTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCACTTTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGAGCTGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATT  >  CP042583/1610084‑1610641
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                   
tttgAGCGGAAAAGGCCGTCGAACGGATCAGTCGGGCTGTACGCTCCTCCAGCGGCGTACTTTGCGCGCCAAACTGCGGGTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGt                                                                                                                                                                                                                                                                               <  2:13880/289‑1 (MQ=255)
  ttAGCGGCAAAGACCAGCGCAAGGATCAAACGTGCTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTag                                                                                                                                                                                                                                                                             >  2:1712977/1‑289 (MQ=255)
                   cgcAAGGATCAAACGTGCTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCa                                                                                                                                                                                                                                                            >  2:1794058/1‑289 (MQ=255)
                      aaGGATCAAACGTGCTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCATAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGc                                                                                                                                                                                                                                                         <  2:1493390/289‑1 (MQ=255)
                             aaaCGTGCTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGAtt                                                                                                                                                                                                                                                  >  1:607839/1‑289 (MQ=255)
                                 gTGCTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAg                                                                                                                                                                                                                                              <  1:1002620/289‑1 (MQ=255)
                                 gTGCTGGACCCTCATACAGCGGCGTCCTTGTCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCAACGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAg                                                                                                                                                                                                                                              <  2:1693905/289‑1 (MQ=255)
                                    cTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCGTATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTg                                                                                                                                                                                                                                           >  1:1805324/1‑289 (MQ=255)
                                    cTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGtt                                                                                                                                                                                                                                            <  2:1551205/288‑1 (MQ=255)
                                    cTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTg                                                                                                                                                                                                                                           >  1:1109950/1‑289 (MQ=255)
                                    cTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTg                                                                                                                                                                                                                                           >  2:451821/1‑289 (MQ=255)
                                         cGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTGACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTa                                                                                                                                                                                                                                      >  2:1944128/1‑289 (MQ=255)
                                         cGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTa                                                                                                                                                                                                                                      >  2:1450327/1‑289 (MQ=255)
                                         cGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTa                                                                                                                                                                                                                                      >  1:1823407/1‑289 (MQ=255)
                                             cATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCT‑GCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAg                                                                                                                                                                                                                                 <  2:544817/289‑1 (MQ=255)
                                              aTCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAg                                                                                                                                                                                                                                 >  1:822564/1‑289 (MQ=255)
                                              aTCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAg                                                                                                                                                                                                                                 <  1:113733/289‑1 (MQ=255)
                                                        gTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTCCCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATATATTTGCGACCAGCAGCGCAGCCTGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATAACTGATCCGCAGACGCGGGCGTAGAAGAACTGCTTTGCCCAAGCAGGTATGTTGGTTGATTTGACCAGTTAGCCatat                                                                                                                                                                                                                       >  2:208164/1‑289 (MQ=255)
                                                         tACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATAtt                                                                                                                                                                                                                      >  1:1534207/1‑289 (MQ=255)
                                                         tACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATAtt                                                                                                                                                                                                                      >  1:1568523/1‑289 (MQ=255)
                                                                cgcgcCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGctcc                                                                                                                                                                                                                >  1:1483430/1‑288 (MQ=255)
                                                                   gcCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCaa                                                                                                                                                                                                            <  2:1568523/289‑1 (MQ=255)
                                                                                 cGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              <  1:1396397/289‑1 (MQ=255)
                                                                                 cGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              <  1:1450327/289‑1 (MQ=255)
                                                                                 cGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              <  1:1026343/289‑1 (MQ=255)
                                                                                 cGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              <  1:1712977/289‑1 (MQ=255)
                                                                                 cGTCCTGATGCGCCGCGCGAATTTTATCTTCGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              >  2:401951/1‑289 (MQ=255)
                                                                                 cGTCCGGATGCGCCGCGCGAATTTTATCTTTGTCTTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              <  2:1652805/289‑1 (MQ=255)
                                                                                         tGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAgaagaa                                                                                                                                                                                                                                                                        >  1:1741096/1‑207 (MQ=255)
                                                                                         tGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAgaagaa                                                                                                                                                                                                                                                                        <  2:1741096/207‑1 (MQ=255)
                                                                                            gccgcGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCAt                                                                                                                                                                                   <  2:650384/289‑1 (MQ=255)
                                                                                             ccgcGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              <  1:593142/277‑1 (MQ=255)
                                                                                             ccgcGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGc                                                                                                                                                                                            >  1:1856410/1‑279 (MQ=255)
                                                                                                cgcgAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACACTTTGACCAATCCCTGATCCGCAGACTAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCATTTAGCCATATTTGCTCCTCAATACCAATTTTTCGTTCCTGTAGCATAGCg                                                                                                                                                                               >  1:306127/1‑289 (MQ=255)
                                                                                                           tCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCGTATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGt                                                                                                                                                                    <  2:1805324/289‑1 (MQ=255)
                                                                                                               tGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGa                                                                                                                                                                <  1:1192468/289‑1 (MQ=255)
                                                                                                               tGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAATCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGa                                                                                                                                                                <  2:237619/289‑1 (MQ=255)
                                                                                                                           acaGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCg                                                                                                                                                    >  2:1994838/1‑289 (MQ=255)
                                                                                                                             aGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTAAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCgag                                                                                                                                                  >  1:1423570/1‑289 (MQ=255)
                                                                                                                               cACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGAc                                                                                                                                                >  1:1910867/1‑289 (MQ=255)
                                                                                                                               cACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGAc                                                                                                                                                >  1:992820/1‑289 (MQ=255)
                                                                                                                                  cGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACaaa                                                                                                                                             >  1:881717/1‑289 (MQ=255)
                                                                                                                                  cGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGACTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCGGTAGCATAGCGGATGAGGATGTAAGAAAATGtaatacgaacaaaa                                                                                                                                             >  2:90336/1‑277 (MQ=255)
                                                                                                                                    tACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAg                                                                                                                                           >  2:1829013/1‑289 (MQ=255)
                                                                                                                                         gCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              >  1:238558/1‑233 (MQ=255)
                                                                                                                                         gCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATgc                                                                                                                                       >  2:1140722/1‑288 (MQ=255)
                                                                                                                                            aCCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCaa                                                                                                                                   >  2:724264/1‑289 (MQ=255)
                                                                                                                                              cGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGt                                                                                                                                                                                                                                <  2:664122/194‑1 (MQ=255)
                                                                                                                                                cTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTCTTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATTCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGCAGCACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCCGTTAGCCATATTTGCTACTCAATAACACTTTTTAGTGCCTCTCGCATAGCGGATGAGCATGTCAGAATCTGTATAACATGACACAAGATGCGCAAATaa                                                                                                                               >  2:1102487/1‑289 (MQ=255)
                                                                                                                                                cTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATaa                                                                                                                               >  1:348325/1‑289 (MQ=255)
                                                                                                                                                 tCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAg                                                                                                                              <  1:1653600/289‑1 (MQ=255)
                                                                                                                                                 tCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAg                                                                                                                              <  1:1068892/289‑1 (MQ=255)
                                                                                                                                                 tCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAg                                                                                                                              <  1:447610/289‑1 (MQ=255)
                                                                                                                                                 tCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAg                                                                                                                              <  2:1858493/289‑1 (MQ=255)
                                                                                                                                                   cgccgcCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCg                                                                                                                            <  1:972123/289‑1 (MQ=255)
                                                                                                                                                    gccgccAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCgg                                                                                                                           <  1:1229234/289‑1 (MQ=255)
                                                                                                                                                     ccgccAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              <  2:921255/221‑1 (MQ=255)
                                                                                                                                                     ccgccAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              >  1:921255/1‑221 (MQ=255)
                                                                                                                                                           aCCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCCTATTTGCTCCTCAATCACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATCTCGAGCCAACAGATGCGCAAATAAGCtggtgggaa                                                                                                                    >  2:851782/1‑283 (MQ=255)
                                                                                                                                                                     cgTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATg                                                                                                                                        >  2:1055310/1‑259 (MQ=255)
                                                                                                                                                                     cgTTGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTAt                                                                                                           >  2:1610287/1‑288 (MQ=255)
                                                                                                                                                                       ttGGTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCa                                                                                                        >  1:49987/1‑289 (MQ=255)
                                                                                                                                                                          gTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              <  2:371522/200‑1 (MQ=255)
                                                                                                                                                                          gTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAg                                                                                                     >  1:1777767/1‑289 (MQ=255)
                                                                                                                                                                          gTGCCATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGGAGGCCGTTATTCAAAg                                                                                                     >  2:14795/1‑289 (MQ=255)
                                                                                                                                                                              cATATTTCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAAt                                                                                                 >  1:453288/1‑289 (MQ=255)
                                                                                                                                                                                   ttCGTAAGAAGTTTACGTGCTTGTTTATTGGCGGCCCGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTcgcg                                                                                            <  2:1910867/289‑1 (MQ=255)
                                                                                                                                                                                   ttCGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTcgcg                                                                                            <  2:283558/289‑1 (MQ=255)
                                                                                                                                                                                     cGTAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGcc                                                                                          <  1:1111858/289‑1 (MQ=255)
                                                                                                                                                                                       tAAGAAGTTTACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGCTGAGGAt                                                                                                                                                                      >  2:593977/1‑211 (MQ=255)
                                                                                                                                                                                              tttACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCaggtaaggt                                                                                 <  2:49987/289‑1 (MQ=255)
                                                                                                                                                                                              tttACGTGCTGATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCaggtaaggt                                                                                 >  2:327201/1‑289 (MQ=255)
                                                                                                                                                                                                 acgtgctgatttATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTAtt                                                                              <  1:1359010/280‑1 (MQ=255)
                                                                                                                                                                                                 acgtgctgatttATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACCAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTAtt                                                                              <  1:853390/280‑1 (MQ=255)
                                                                                                                                                                                                 acctgctgatttATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTAtt                                                                              <  2:928163/280‑1 (MQ=255)
                                                                                                                                                                                                     gctgatttATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTAc                                                                           <  1:1994096/283‑1 (MQ=255)
                                                                                                                                                                                                     gctgatttATTTGCCACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTAc                                                                           <  2:826813/283‑1 (MQ=255)
                                                                                                                                                                                                           ttATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTAAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTatat                                                                    <  2:1423570/289‑1 (MQ=255)
                                                                                                                                                                                                             aTTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCa                                                                  <  1:327201/289‑1 (MQ=255)
                                                                                                                                                                                                                   gACCAGCAGCCCCGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGAt                                                            <  1:579203/289‑1 (MQ=255)
                                                                                                                                                                                                                   gACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCaggt                                                                                      >  2:857920/1‑263 (MQ=255)
                                                                                                                                                                                                                   gACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGAt                                                            >  1:1520413/1‑289 (MQ=255)
                                                                                                                                                                                                                                    gTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGa                                           >  1:374504/1‑289 (MQ=255)
                                                                                                                                                                                                                                      ccGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGaaa                                         <  2:1279374/289‑1 (MQ=255)
                                                                                                                                                                                                                                           tAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAagtagt                                    <  2:1520413/289‑1 (MQ=255)
                                                                                                                                                                                                                                                cgcCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTa                                                                            <  2:141478/244‑1 (MQ=255)
                                                                                                                                                                                                                                                  ccTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGt                             >  1:1014422/1‑289 (MQ=255)
                                                                                                                                                                                                                                                      gCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTg                         >  1:1596274/1‑289 (MQ=255)
                                                                                                                                                                                                                                                        aCTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAg                       <  2:1777767/289‑1 (MQ=255)
                                                                                                                                                                                                                                                        aCTAACAGTTTGACCAATCCCTGAACCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAg                       <  2:1309468/289‑1 (MQ=255)
                                                                                                                                                                                                                                                           aaCAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTg                     >  1:1290381/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                tttGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGcc                                                                                          <  1:74349/214‑1 (MQ=255)
                                                                                                                                                                                                                                                                tttGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGcc                                                                                          >  2:74349/1‑214 (MQ=255)
                                                                                                                                                                                                                                                                tttGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTg               >  1:710970/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                 ttGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGt                                                                                                                                                                                              >  2:1011751/1‑113 (MQ=255)
                                                                                                                                                                                                                                                                 ttGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCa                  <  1:1746545/285‑1 (MQ=255)
                                                                                                                                                                                                                                                                    aCCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGGTGCATTGTTTg           >  2:610823/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                        aTCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGACAATGTATATCGAGACAAAAGATGCGCAAGTAAGCGGGGCGGTAGGCCGTTATTCAAAGAACTTCGCGCCAGGTAAGGTATTGACTGCATAACAGGTGATAAGGGAATTTTAGGTGAACGTGGTTTGTCGTTTTTAGAGGCAGTGTTTTATgt       >  2:1166765/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                        aTCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGAt         >  1:800779/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                           ccTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGa    <  2:581321/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                   
TTTTAGCGGCAAAGACCAGCGCAAGGATCAAACGTGCTGTACGCTCATCCAGCGGCGTACTTTGCGCGCCAAACTGCGGTTCGTCCTGATGCGCCGCGCGAATTTTATCTTTGTATTTATTCCACAGCACCGTACCCGCTACCGCTCCGCCGCCAACCAGTAACGCGTTGGTGCCATATTTCGTAAGAAGTTTACGTGCACTTTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGAGCTGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATT  >  CP042583/1610084‑1610641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A