Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,541,713 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,541,7130GC98.8% 561.5 / NA 249intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/3);  new base C (143/102);  total (143/106)
Fisher's exact test for biased strand distribution p-value = 7.46e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,541,7140CG98.8% 557.0 / NA 249intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/3);  new base G (143/101);  total (143/106)
Fisher's exact test for biased strand distribution p-value = 7.34e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,541,7150TA99.2% 569.9 / NA 249intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base A (142/105);  total (143/106)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 249 total aligned reads displayed.

ATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCACTATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGGCTTTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGGCTCAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAAACTACAGAGCGGATAACTCCAGTTGCCAATAAAGGAAACCCGACTACTCCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGACTGAAAGCACCGACAACCATGCTGG  >  CP042583/1541435‑1541987
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                  
aTTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTg                                                                                                                                                                                                                                                                            <  2:1434824/289‑1 (MQ=255)
   agagtgtACTGCACAACGTTCATGGCAATCAGCACAAAAGATCCTAATATCCCGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAg                                                                                                                                                                                                                                                                         <  1:413494/286‑1 (MQ=255)
        gtACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATa                                                                                                                                                                                                                                                                   <  1:883250/289‑1 (MQ=255)
         tACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATaa                                                                                                                                                                                                                                                                  >  1:746902/1‑289 (MQ=255)
              cacaACGTTCCTACACATCAGCACACAAGTGCCTATGAGCACGCTTTGCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAg                                                                                                                                                                                                                                                              <  2:522140/288‑1 (MQ=255)
              cacaACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATCAGCGACACTAATGCAGGG‑ATAAGCCGt                                                                                                                                                                                                                                                             >  2:382270/1‑289 (MQ=255)
                 aaCGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGt                                                                                                                                                                                                                                                          >  1:1316636/1‑289 (MQ=255)
                   cGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTa                                                                                                                                                                                                                                                         >  1:249172/1‑288 (MQ=255)
                   cGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCCTCTATACTCCGCATGATTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCCGCGCGGGGTGTCAGGAAAGTAGCGCCAGGCCAGCCGCGTAGCTATAAGCGACAATATTGCAGGG‑ATAAGAAGGTGTa                                                                                                                                                                                                                                                         >  2:256820/1‑288 (MQ=255)
                       cATGGCAATCAGCACACAAGGGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGc                                                                                                                                                                                                                                                   <  1:1890559/289‑1 (MQ=255)
                       aaTGGCAATCAGCACACAAGGTCCTACTATCACGCGTTTCAGTAATACCCCTGTCTGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATACCCA‑CAGGCGGCAAAGGTTTACCCTTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCGGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGc                                                                                                                                                                                                                                                   <  2:803820/288‑1 (MQ=255)
                             actCAGCACACAAGAGCCTAATATCACGCGTTTCATTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGtt                                                                                                                                                                                                                                              <  1:1928082/286‑1 (MQ=255)
                             aaTCAGCACACAAGAGCCTAATATCACGCGTTTCATTAATACTCCTGTCAGTAAGGCTAAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGtt                                                                                                                                                                                                                                              <  1:1646532/288‑1 (MQ=255)
                             aaTCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGtt                                                                                                                                                                                                                                              <  1:264328/288‑1 (MQ=255)
                              aTCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTcc                                                                                                                                                                                                                                            >  1:990190/1‑289 (MQ=255)
                               tCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTACCGATCAGCGACACTATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCCGTTcc                                                                                                                                                                                                                                            >  2:1317676/1‑288 (MQ=255)
                                                  tatCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGACTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCACCTCTGCACTAATCCgcggc                                                                                                                                                                                                                        >  2:239166/1‑289 (MQ=255)
                                                       cgcgTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAg                                                                                                                                                                                                                   >  1:376307/1‑289 (MQ=255)
                                                       cgcgTTTCAATAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCa                                                                                                                                                                                                                                                                          >  1:1319773/1‑236 (MQ=255)
                                                        gcgTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTCCACTAACCAGCGGCGTGat                                                                                                                                                                                                                   >  2:1545574/1‑287 (MQ=255)
                                                           tttCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTcc                                                                                                                                                                                                                >  2:122653/1‑288 (MQ=255)
                                                            ttCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGc                                                                                                                                                                                                                                                   <  1:1220228/252‑1 (MQ=255)
                                                                atAATACTCCTGTCAGTAAGGCTGAAGACGGCCCCGTTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGc                                                                                                                                                                                                          <  1:1254534/288‑1 (MQ=255)
                                                                 tAATACTCCTGTAGTTAAGGCTGAATACGCCCCCGCTTGGGGCGCTTTCCCGTCATCAGAAATAACCC‑CCGGCGGCAAAGGTTTACCCGTCTGGCGTATGCCGCCTTCTTCTATCCTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGc                                                                                                                                                                                                          <  2:1465856/288‑1 (MQ=255)
                                                                  attatcccTGTCAGAAAGGCTGAATACGGCACCGCTTGTGGCGTTTTACCGTCATCAGCAATACCCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGAAAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGc                                                                                                                                                                                                          <  2:769694/281‑1 (MQ=255)
                                                                  aaTACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGc                                                                                                                                                                                                          <  1:904696/287‑1 (MQ=255)
                                                                  aaTACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTa                                                                                                                                                                                                        <  1:1353925/289‑1 (MQ=255)
                                                                         cTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCaatga                                                                                                                                                                                                 >  1:527094/1‑286 (MQ=255)
                                                                         cTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCaatga                                                                                                                                                                                                 >  1:174531/1‑286 (MQ=255)
                                                                         cTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACCCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCaatga                                                                                                                                                                                                 >  2:461979/1‑286 (MQ=255)
                                                                          tGTCAGTAAGGCAGAATAGGGCACCGCTTGTGGCGCTTTACCGTCATCAGAAATAACCA‑CAGGCGGAAAAGGTTTCCCCGTCGGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCAAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCaatgaa                                                                                                                                                                                                <  2:888692/289‑5 (MQ=255)
                                                                           gTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGtt                                                                                                                                                                                                                                              >  1:1620170/1‑242 (MQ=255)
                                                                                taaggctgaataCGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTg                                                                                                                                                                                                                                      >  1:232556/10‑245 (MQ=255)
                                                                                taaggctgaataCGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCATCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTg                                                                                                                                                                                                                                      <  2:232556/236‑1 (MQ=255)
                                                                                 aaggctgaataCGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCg                                                                                                                                                                                                           >  1:1448011/9‑271 (MQ=255)
                                                                                               cACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTCGCGATCAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGCTCCACTCTGCAATAATCAGCGGCCTGAGTCCCACCCCTCTCAATGAACAGAGCGGaaatgaccagtt                                                                                                                                                                            >  2:1702047/1‑277 (MQ=255)
                                                                                                    cTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGc                                                                                                                                                                                                          >  2:1031160/1‑253 (MQ=255)
                                                                                                    cTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGc                                                                                                                                                                                                          <  1:1031160/253‑1 (MQ=255)
                                                                                                              tttACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATatgac                                                                                                                                                                                 <  1:1874787/268‑5 (MQ=255)
                                                                                                               ttACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCAct                                                                                                                                                                                                                                         <  1:1023901/211‑1 (MQ=255)
                                                                                                                         acggaaTAACCCCCAGCCGGCAAAGTTTTCCCGGTCGGCCGAGTGCCGCTTCCTCCAACCCTCCGCAGGACTTTCCCGGCTCCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGTGGATCCGGGAAAGTAGCGCCAGCCCAGCGCGGTATCGATAAGCGACAATATTGCAGGG‑ATAAGCATTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGacttgacc                                                                                                                                                  <  2:1573533/285‑6 (MQ=255)
                                                                                                                            cAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGCCTTTCTCGGCTTCCTGATACCGTCCGCCCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCATGG‑ATACGCAGTTGTA‑CCCGACAGTCACACTCTGCACTAATCAGCGGCGTGCGTCCCTTCGCTATCAATGTACACAGCGGCAATGACTGATTGCCACTCAAGGAAACCCGaattgacaacc                                                                                                                                               >  2:836213/1‑278 (MQ=255)
                                                                                                                            cAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGc                                                                                                                                                                                                          <  2:961994/229‑1 (MQ=255)
                                                                                                                            cAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGAGTCAGGAAAGTAGCGCCAGGCCAGCGCCGTCGCGACAAGCGACAATATTGCCGGG‑ATAAGCAGTTGGA‑CCCGCCAGTTCCACTCCGCCCTAATCAGCGTCGTGACCCCCATCGCCATCCATGCACACTGCGGATCGCACCAGTTGCCATTACAGGAAACCCGaattcgccccc                                                                                                                                               >  2:736529/1‑278 (MQ=255)
                                                                                                                               tAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAg                                                                                                                                                                                                                            >  1:459019/1‑208 (MQ=255)
                                                                                                                                       aGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGAtt                                                                                                                                     >  2:637163/1‑288 (MQ=255)
                                                                                                                                          cggcAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCt                                                                                                                                  >  1:1435408/1‑288 (MQ=255)
                                                                                                                                            gcAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTAcc                                                                                                                               >  1:603163/1‑289 (MQ=255)
                                                                                                                                              aaaGGTTTCCCCGTCTGGCGTATGCCGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCg                                                                                                                              <  1:1281680/288‑1 (MQ=255)
                                                                                                                                               aaGTTTTCCCCTCCTGGCGTATGGCGCCTTCTTTTATACTCCGAATGCCTTCCGCGGTCTCCGGAGACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGGGCCAGGCCAGCGCGGTAGCGAAAAGCGACAATTTTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCggg                                                                                                                            <  2:712459/289‑1 (MQ=255)
                                                                                                                                                      cccctattGGCGTATTACGCTTTCTGTTAACCTCGCAATGTCTTTCTCGCGTTCCGGTAACCGGCCGCGGGATCCAAGCCAGCGCGGGGATTAAGGAAAGTGGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAGGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCatatat                                                                                                                     <  2:1151597/282‑1 (MQ=255)
                                                                                                                                                                       ccccTTCTTCTATACTCGGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCaa                                                                                                     <  1:1545574/286‑1 (MQ=255)
                                                                                                                                                                         ccTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACa                                                                                                  >  1:911584/1‑289 (MQ=255)
                                                                                                                                                                          cttcttCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCa                                                                                                                                                                                                                                    >  1:221657/1‑158 (MQ=255)
                                                                                                                                                                           ttcttcTATACTCCGCACGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGc                                                                                                <  1:93467/289‑1 (MQ=255)
                                                                                                                                                                              ttttatgCTCCGCAGGACTTTCTCGGTTTCCTGTTCCCGCCCGCGCGATTCCAGCCGGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCGGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCGGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTa                                                                                             <  2:583797/286‑1 (MQ=255)
                                                                                                                                                                                      tCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGACCAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTAACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaa                                                                                     >  1:1581140/1‑289 (MQ=255)
                                                                                                                                                                                      tCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTAc                                                                                                                                <  1:1725527/246‑1 (MQ=255)
                                                                                                                                                                                        cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTACCCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaaa                                                                                    >  1:1513090/1‑289 (MQ=255)
                                                                                                                                                                                        cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGc                                                                                                                                                                                                                                                   <  2:1075155/129‑1 (MQ=255)
                                                                                                                                                                                        cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTcc                                                                                                                                           >  2:1494302/1‑233 (MQ=255)
                                                                                                                                                                                        cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaaa                                                                                    >  1:1773151/1‑288 (MQ=255)
                                                                                                                                                                                        cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaaa                                                                                    >  1:631515/1‑288 (MQ=255)
                                                                                                                                                                                        cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaaa                                                                                    >  1:896232/1‑288 (MQ=255)
                                                                                                                                                                                        cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaaa                                                                                    >  1:183981/1‑288 (MQ=255)
                                                                                                                                                                                        cGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACAAGCAAACAGCGTAACCAGTAAAg                                                                                   >  1:1948164/1‑289 (MQ=255)
                                                                                                                                                                                        cGCATGACTTTCTCAGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGAAATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGTGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaaa                                                                                    >  1:578232/1‑288 (MQ=255)
                                                                                                                                                                                          cATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCg                                                                                                                              >  2:1281383/1‑244 (MQ=255)
                                                                                                                                                                                          cATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCaa                                                                                                     >  2:1845570/1‑269 (MQ=255)
                                                                                                                                                                                             gACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATACAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATAAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACGACGTCCCACGATTTCTACCGGCCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTccc                                                                              >  1:1129608/1‑289 (MQ=255)
                                                                                                                                                                                                         gtCCAGATACCGTCCGCGCTATCCCCACCAGCGCAGGGATTCAGGAAAGAAGCGCCAGGCCAGCGCCGTAGCGATAAGCGAAAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTcc                                                                   <  1:947733/287‑1 (MQ=255)
                                                                                                                                                                                                          tCCTGATACCGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAACGCTCCCAGCCCAACTCCCa                                                                 >  1:1350609/1‑289 (MQ=255)
                                                                                                                                                                                                          tCCTGATACCGCCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATGGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCa                                                                 <  1:510897/289‑1 (MQ=255)
                                                                                                                                                                                                                   cGTCCGCGCGATTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTCCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCCTAACCAGTAAAGCTCCCAGCCCAACTCCCACCACaaaaa                                                        >  2:1335983/1‑288 (MQ=255)
                                                                                                                                                                                                                     tccgcgcgattCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTcc                                                                                                                                           >  2:1352212/10‑204 (MQ=255)
                                                                                                                                                                                                                     tccgcgcgattCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCa                                                                                                      >  2:1829875/10‑241 (MQ=255)
                                                                                                                                                                                                                     tccgcgcgattCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGc                                                                                                >  2:631808/10‑247 (MQ=255)
                                                                                                                                                                                                                     tccgcgcgattCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACgg                                                      >  1:621032/10‑289 (MQ=255)
                                                                                                                                                                                                                     tccgcgcgattCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACgg                                                      >  2:293273/10‑289 (MQ=255)
                                                                                                                                                                                                                     tccgcgcgattCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACg                                                       >  2:1328338/10‑288 (MQ=255)
                                                                                                                                                                                                                     tccgcgcgattCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACg                                                       >  1:784743/10‑288 (MQ=255)
                                                                                                                                                                                                                     tccgcgcgattCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACg                                                       >  1:1269815/10‑288 (MQ=255)
                                                                                                                                                                                                                       cgcgcgattCCAGCCAGCGCGGGGATTAAGGAAAGTAGCGCCAGGCCAGCTCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTC‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACggca                                                    <  1:670564/282‑1 (MQ=255)
                                                                                                                                                                                                                         cgcgattCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACAAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACggcag                                                   >  1:721636/6‑288 (MQ=255)
                                                                                                                                                                                                                                ccggccagcGCGGGGATTCAGGAAAGGAGCGCCAGGCGCGCGCCGTAGCGAAACGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAg                                           <  2:1412112/286‑1 (MQ=255)
                                                                                                                                                                                                                                  ggcacgcgcGGGGTTTGAGAAAAGCAGAGCCAGGCCGGCGCCGTAGCGATAAGCGACAATATTGCGGGG‑ATAAGCTGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGa                                         <  2:911584/284‑1 (MQ=255)
                                                                                                                                                                                                                                    ccagcGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCCCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGaaa                                       <  1:1089706/289‑1 (MQ=255)
                                                                                                                                                                                                                                        cgcgGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGa                                                                                                                                                                <  1:1055220/164‑1 (MQ=255)
                                                                                                                                                                                                                                        cgcgGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGa                                                                                                                                                                >  2:1055220/1‑164 (MQ=255)
                                                                                                                                                                                                                                        cgcgGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTaaa                                                                                    <  1:834022/240‑1 (MQ=255)
                                                                                                                                                                                                                                        cgcgGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACggca                                                    >  2:830418/1‑272 (MQ=255)
                                                                                                                                                                                                                                        cgcgGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCa                                   >  1:318519/1‑289 (MQ=255)
                                                                                                                                                                                                                                           ggggATTGAAGAAAGGGGCGCCAGGCCAGGGCGGTAGAGATAAGGCACAATATCGCACGG‑ATCAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCata                                 <  2:1910835/288‑1 (MQ=255)
                                                                                                                                                                                                                                                  cAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCaatgaa                                                                                                                                                                                                <  2:1679502/122‑5 (MQ=255)
                                                                                                                                                                                                                                                  cAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCaatgaa                                                                                                                                                                                                >  1:1679502/1‑118 (MQ=255)
                                                                                                                                                                                                                                                          aaGCGCCAGGCCGACGCCGAAGCGAAAAGCGACAATATTGAGGGG‑ATAAGAAGTTGTA‑CCCGCCAGTGCCACTCTGCACTAATCAGCGGAGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCa                  <  2:937658/287‑1 (MQ=255)
                                                                                                                                                                                                                                                               ccaggccagCGCCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACa            >  2:544005/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                         gcCGTAGCGATAAGCGACAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCAtcgag   >  2:111491/1‑284 (MQ=255)
                                                                                                                                                                                                                                                                         gcCGTAGAGATAA‑GCTAAAATTATCAGGGAATAAGCGGTTGGA‑CCCGCCAGTTCCACTCAGCACTAATCATCCGCGTGAGTCCCATCGCTAGCAATGAACAAAGCGGATATGACCAGTGGCCAATAAATGAAAGCCGACTTGACCACGTTCCAGGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCAtcgag   <  2:1948164/288‑5 (MQ=255)
                                                                                                                                                                                                                                                                         cccGAAGCGATAAGCGAAAATCTTGCGGGG‑ATAGACCGGTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAATGAACAGAGCGGATATGACCAGTTGCCAATAAAGGAAACCCGACTTGACCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGTGAGAAAGCACCGACAACCAtcgagg  <  2:351700/288‑6 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                  
ATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCACTATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCA‑CAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGGCTTTCCAGCCAGCGCGGGGATTCAGGAAAGTAGCGCCAGGCCAGCGCCGTAGCGATAAGGCTCAATATTGCAGGG‑ATAAGCAGTTGTA‑CCCGCCAGTTCCACTCTGCACTAATCAGCGGCGTGAGTCCCATCGCTATCAAACTACAGAGCGGATAACTCCAGTTGCCAATAAAGGAAACCCGACTACTCCACGTTCCACGATTTCTACCGGGCATATATTCGGTGAAACCAGCAAACAGCGTAACCAGTAAAGCTCCCAGCCCAACTCCCATCACAAAACGGCAGGCAATAAGGAAATCCATATTCGGACTGAAAGCACCGACAACCATGCTGG  >  CP042583/1541435‑1541987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A