Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,608,860 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,608,8600GC99.4% 747.5 / NA 317intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (161/154);  minor base A (2/0);  total (163/154)
Fisher's exact test for biased strand distribution p-value = 4.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,608,8610CG100.0% 751.8 / NA 317intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (163/154);  total (163/154)
*CP0425831,608,8620TA99.7% 754.5 / NA 317intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (161/154);  minor base G (1/0);  total (163/154)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 317 total aligned reads displayed.

GTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTGCTGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGGCTTGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAA  >  CP042583/1608581‑1609140
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                      
      aaaCAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCGTACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATg                                                                                                                                                                                                                                                                            <  1:2134253/288‑1 (MQ=255)
           gCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAg                                                                                                                                                                                                                                                                         >  1:1590958/1‑286 (MQ=255)
            cGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTg                                                                                                                                                                                                                                                                     >  2:140035/1‑289 (MQ=255)
             gTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTg                                                                                                                                                                                                                                                                     <  1:366888/288‑1 (MQ=255)
             gTAAACCCTTCCAGCATGATG‑TTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTg                                                                                                                                                                                                                                                                     <  1:2789510/287‑1 (MQ=255)
                      tCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCCTCGAGGTCGTTTTATGCAGGCTTACGTAATAgg                                                                                                                                                                                                                                                           >  1:1554627/1‑289 (MQ=255)
                             tgatgTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGTGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTc                                                                                                                                                                                                                                                    <  2:2549044/289‑1 (MQ=255)
                                  gtttCGCGTGGTGAAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGTCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCTAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCttttt                                                                                                                                                                                                                                               <  1:1839181/288‑1 (MQ=255)
                                   tttCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCttttt                                                                                                                                                                                                                                               <  1:2234028/288‑1 (MQ=255)
                                          tGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAg                                                                                                                                                                                                                                       >  1:1616070/1‑289 (MQ=255)
                                           ggCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGa                                                                                                                                                                                                                                      <  1:548220/289‑1 (MQ=255)
                                            gCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGa                                                                                                                                                                                                                                      >  1:2606476/1‑288 (MQ=255)
                                                 aTTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGt                                                                                                                                                                                                                                 <  2:1124006/288‑1 (MQ=255)
                                                        ctTCCCCATGTTGCTCATAACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTg                                                                                                                                                                                                                         <  2:2256152/289‑1 (MQ=255)
                                                        ctTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTg                                                                                                                                                                                                                         <  1:1063480/289‑1 (MQ=255)
                                                          tCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAgg                                                                                                                                                                                                                                                                        <  1:2531106/240‑1 (MQ=255)
                                                          tCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTgcg                                                                                                                                                                                                                       >  1:974650/1‑287 (MQ=255)
                                                           ccaaCTGTTGCTCATCAGGCATACGGGTACGAGATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCGGTATTCGTGATCTTTGCAGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTgcga                                                                                                                                                                                                                      <  2:411402/286‑4 (MQ=255)
                                                             cACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTgcgatg                                                                                                                                                                                                                    <  1:2086625/289‑6 (MQ=255)
                                                                 tttGCGCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTgg                                                                                                                                                                                                                <  2:743779/288‑1 (MQ=255)
                                                                     cTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGACCTTCACTGGTGGTGGCGCTGGCCACATGAATGACTACCTAGTGCTTCGCGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTCCGTAGATCAGTTTATGtttcgatgcgggcgt                                                                                                                                                                                                             >  2:1304314/1‑275 (MQ=255)
                                                                     cTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGc                                                                                                                                                                                                                                                                       <  1:1289947/230‑1 (MQ=255)
                                                                     cTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGc                                                                                                                                                                                                                                                                       >  2:1289947/1‑230 (MQ=255)
                                                                     cTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCt                                                                                                                                                                                                                                                                      >  2:1681357/1‑231 (MQ=255)
                                                                     cTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCt                                                                                                                                                                                                                                                                      >  2:1613446/1‑231 (MQ=255)
                                                                     cTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTgcgatg                                                                                                                                                                                                                    >  1:1530962/1‑276 (MQ=255)
                                                                     cTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGt                                                                                                                                                                                                             >  2:1796771/1‑288 (MQ=255)
                                                                     cTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGt                                                                                                                                                                                                             >  2:3121747/1‑288 (MQ=255)
                                                                     cTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGt                                                                                                                                                                                                             >  2:2303398/1‑288 (MQ=255)
                                                                          caCGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGCGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGAt                                                                                                                                                                                                       >  1:885243/1‑289 (MQ=255)
                                                                                tACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTCGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCCGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCACGCGAACTTCACTGGTGGTGGCGCTGGACAAATGGCTGACTTCATAGTGCTTCGAGGTCGTTTTATGCGGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTACATCAGATTATCTTGCGCTGCTCGCGTAACGATGTCGtt                                                                                                                                                                                                 >  2:895726/1‑288 (MQ=255)
                                                                                  cGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGAc                                                                                                                                                                                               >  1:2867728/1‑289 (MQ=255)
                                                                                    ggTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAg                                                                                                                                                                                                                                       >  1:1099489/1‑247 (MQ=255)
                                                                                     atACGGTATAAGACAAAG‑TTTGGCCGGGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCGGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGcc                                                                                                                                                                                            <  2:2941121/287‑1 (MQ=255)
                                                                                      tACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTTGCGTACCGATGGCGTGCCGCCa                                                                                                                                                                                           >  2:2900676/1‑289 (MQ=255)
                                                                                       aCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACATAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAg                                                                                                                                                                                          >  2:2028093/1‑289 (MQ=255)
                                                                                         ggTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGt                                                                                                                                                                                                  >  2:2331866/1‑279 (MQ=255)
                                                                                         ggTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGt                                                                                                                                                                                                  <  1:2331866/279‑1 (MQ=255)
                                                                                           tataAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGAc                                                                                                                                                                                        >  1:2284021/1‑287 (MQ=255)
                                                                                             taAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGa                                                                                                                                                                                    <  2:1906755/289‑1 (MQ=255)
                                                                                              aaGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGAt                                                                                                                                                                                   >  1:141910/1‑289 (MQ=255)
                                                                                                    aaGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAGCGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTGGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTACAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATAGCGTGACGCCAGACCTGATAAGgca                                                                                                                                                                             <  2:220342/289‑1 (MQ=255)
                                                                                                     aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATg                                                                                                                                                                                                                                                                            <  1:311368/193‑1 (MQ=255)
                                                                                                     aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCt                                                                                                                                                                                                                                                                      >  1:3007423/1‑199 (MQ=255)
                                                                                                     aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCt                                                                                                                                                                                                                                                                      >  1:1034615/1‑199 (MQ=255)
                                                                                                     aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCt                                                                                                                                                                                                                                                                      <  2:3007423/199‑1 (MQ=255)
                                                                                                     aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCttttt                                                                                                                                                                                                                                               <  2:3077187/222‑1 (MQ=255)
                                                                                                     aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGa                                                                                                                                                                                                                                      <  1:1930938/231‑1 (MQ=255)
                                                                                                     aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACg                                                                                                                                                                                              >  1:3075107/1‑271 (MQ=255)
                                                                                                     aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGgcag                                                                                                                                                                            <  2:481523/289‑1 (MQ=255)
                                                                                                     aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGgca                                                                                                                                                                             >  1:481523/1‑288 (MQ=255)
                                                                                                     aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGgca                                                                                                                                                                             >  1:2366477/1‑288 (MQ=255)
                                                                                                     aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATCTTGGCGTACCGATGGCGTGACGCCCGACCTGATAAGgcag                                                                                                                                                                            >  2:2825250/1‑289 (MQ=255)
                                                                                                     aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGGAATAGGTATCGTCTTTTTCTTTGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGAGAGCGTGACGCCAGAACTGATAAGgca                                                                                                                                                                             >  1:2041461/1‑288 (MQ=255)
                                                                                                     aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGGGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATTCTGGCGTACCCATGGCGTGACTCCAGACCTGATAAGgcc                                                                                                                                                                             >  2:3109381/1‑287 (MQ=255)
                                                                                                     aGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGATGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGt                                                                                                                                                                                                  <  1:403216/267‑1 (MQ=255)
                                                                                                                 ggCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCg                                                                                                                                                                 <  2:2125396/288‑1 (MQ=255)
                                                                                                                   cggtgtgAACGCAGAACGAAACGGTGATTGTTGTGCTCAAGGCTGTATTCCGGATCTTCGCGGCGCGGCAGAAAAACAAACGGCTCGGCCTCCGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTTGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGa                                                                                                                                                               <  2:359252/282‑1 (MQ=255)
                                                                                                                           aCGAAGATAAAAACGAGGCTGGGAGTGTTCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGa                                                                                                                                                      <  2:2476314/289‑1 (MQ=255)
                                                                                                                                    aaaaCGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTgcgat                                                                                                                                                                                                                     <  1:3080002/217‑5 (MQ=255)
                                                                                                                                           tGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGGGTCCCCGGCTGCTTGCGAACATAGGAGAAAAAcc                                                                                                                                      >  2:39184/1‑289 (MQ=255)
                                                                                                                                           tGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATcc                                                                                                                                      >  1:677915/1‑289 (MQ=255)
                                                                                                                                                     gATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTg                                                                                                                                                                                                                         >  2:2589633/1‑196 (MQ=255)
                                                                                                                                                       tCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGt                                                                                                                                                                                                  >  2:1191223/1‑217 (MQ=255)
                                                                                                                                                       tCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGt                                                                                                                                                                                                  <  1:1191223/217‑1 (MQ=255)
                                                                                                                                                         aaGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGa                                                                                                                                                               <  2:1532899/250‑1 (MQ=255)
                                                                                                                                                          aGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATg                                                                                                                                                                                                                                                                            >  1:24465/1‑140 (MQ=255)
                                                                                                                                                           ggCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCagcagc                                                                                                                                                                        <  1:893364/239‑1 (MQ=255)
                                                                                                                                                           ggCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATg                                                                                                                                                             >  2:1429396/1‑250 (MQ=255)
                                                                                                                                                                tATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAgg                                                                                                                                                                                                                                                                        >  2:566622/1‑138 (MQ=255)
                                                                                                                                                                tATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGaa                                                                                                                                                     <  2:84755/253‑1 (MQ=255)
                                                                                                                                                                tATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACaa                                                                                                                 >  1:1744412/1‑289 (MQ=255)
                                                                                                                                                                   tcctgttCTTGGCGGCGCGGCGGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGc                                                                                                              <  2:2708262/283‑1 (MQ=255)
                                                                                                                                                                     gTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTttct                                                                                                                                                                                                                                             >  1:612692/1‑160 (MQ=255)
                                                                                                                                                                       gATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGTCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGc                                                                                                                                                                                                                                                                       <  1:334150/132‑1 (MQ=255)
                                                                                                                                                                             tGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGt                                                                                                                                                                                                  <  1:2553365/195‑1 (MQ=255)
                                                                                                                                                                             tGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGa                                                                                                                                                                                         <  1:779139/204‑1 (MQ=255)
                                                                                                                                                                                    cggcAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATcc                                                                                             >  2:2575590/1‑289 (MQ=255)
                                                                                                                                                                                                        cGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTA‑AAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGtaccagtta                                                                        <  1:2691812/289‑1 (MQ=255)
                                                                                                                                                                                                                     ttCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGa                                                            <  1:2671980/289‑1 (MQ=255)
                                                                                                                                                                                                                          cgTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACg                                                       >  1:2838886/1‑289 (MQ=255)
                                                                                                                                                                                                                                  agGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGa                                                <  1:2906711/288‑1 (MQ=255)
                                                                                                                                                                                                                                     cGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGa                                                                                                                                            <  2:2840652/193‑1 (MQ=255)
                                                                                                                                                                                                                                     cGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATg                                             <  1:2484343/288‑1 (MQ=255)
                                                                                                                                                                                                                                     cGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATg                                             <  2:2366477/288‑1 (MQ=255)
                                                                                                                                                                                                                                      gAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGc                                            <  2:1937354/288‑1 (MQ=255)
                                                                                                                                                                                                                                         cTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTa                                        <  1:1971762/289‑1 (MQ=255)
                                                                                                                                                                                                                                               tggtggtggCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGa                                                                                                                    <  1:2195858/207‑1 (MQ=255)
                                                                                                                                                                                                                                                    gtggCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGAATCAGAAAACGAATGCCGTACTGGCGTCggg                             >  2:1822958/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    gtggCGCTGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACACAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGC‑TCgggg                            >  2:1163758/1‑288 (MQ=255)
                                                                                                                                                                                                                                                           tGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGgaaagaaa                      >  1:1473399/1‑289 (MQ=255)
                                                                                                                                                                                                                                                           tGGCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCATCGGgaaagaaa                      >  1:1740092/1‑289 (MQ=255)
                                                                                                                                                                                                                                                            ggCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCa                                                                                                                                                                    <  2:1093003/146‑1 (MQ=255)
                                                                                                                                                                                                                                                            ggCCAAATGAATGACTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGaaaa                     >  2:7152/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                     aatgaCTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTGTCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGaa                                               >  1:1810954/1‑254 (MQ=255)
                                                                                                                                                                                                                                                                       tgaCTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGtt                                                                                                        <  2:58918/195‑1 (MQ=255)
                                                                                                                                                                                                                                                                       tgaCTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAg          <  2:885243/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                          cTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAgcg        <  1:1163758/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                          cTACATAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAgcg        <  1:3139875/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                              aTAGTGCTTCGAGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGCGATGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATa   <  2:1585040/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                      
GTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGCGAACTTCACTGGTGGTGGCGCTGGCCAAATGAATGACTACATAGTGCTTGCTGGTCGTTTTATGCAGGCTGACGTAATAGGTATCGTCTTTTTCTTCGTAGATCAGTTTATCTTGGCTTGCTGGCGTACCGATGGCGTGACGCCAGACCTGATAAGGCAGCAGCGTCACCGGATGCTTGCGAACATAGTAGAAAATCCAGGAGTCATTTGCCCAGACAAAGCTGGGTTCAACGTTATCCAGCAGTTCCGGGTACCAGTTACCAGTTTCCAGATTACGAAAACGAATGCCGTACTGGCGTCGGGAAAGAAAATCTTCTGCCAGCGCCATAA  >  CP042583/1608581‑1609140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A