Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,637,687 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,637,6870GC99.3% 972.8 / ‑2.0 413intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (212/195);  minor base T (2/1);  total (215/198)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01
*CP0425831,637,6880CG99.3% 963.7 / NA 413intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/2);  new base G (213/196);  total (215/198)
Fisher's exact test for biased strand distribution p-value = 6.10e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,637,6890TA98.8% 950.5 / ‑4.0 413intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/0);  major base A (208/195);  minor base G (4/1);  total (215/198)
Fisher's exact test for biased strand distribution p-value = 3.74e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 413 total aligned reads displayed.

CAGCTCACCTGTACATAGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTACTAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCGCTTGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACGCATTGACGGTGTAATGGTCGGCGGCAATAGGGGCATGACAACCAGCGCAATAGGTATCGTCAAGTTTTTCAGC  >  CP042583/1637412‑1637968
                                                                                                                                                                                                                                                                                   |||                                                                                                                                                                                                                                                                                       
      aCCTGTACATAGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGCTTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCt                                                                                                                                                                                                                                                                         >  1:3066371/1‑288 (MQ=255)
       ccTGTACATAGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTcc                                                                                                                                                                                                                                                                       <  1:2672832/289‑1 (MQ=255)
          ttACCTAGGTATCTTCGCCACCACCGTTCGCCGGTTGCAGTGGAGTATCTGGATAGCTTTTGCTCACCCTCGGATGCAGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGc                                                                                                                                                                                                                                                                    <  2:2942918/288‑1 (MQ=255)
                aGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTcc                                                                                                                                                                                                                                                                       <  2:110385/280‑1 (MQ=255)
                aGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAAt                                                                                                                                                                                                                                                              >  1:3110384/1‑289 (MQ=255)
                aGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGACGTCACAACCAGCGCCCCAGCGGCAAt                                                                                                                                                                                                                                                              >  1:1775295/1‑289 (MQ=255)
                aGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGAGAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGTGAGCCGTGCCGCCGATGTCACCACCCgcacccccacggccac                                                                                                                                                                                                                                                              >  2:1225804/1‑275 (MQ=255)
                  gTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTTTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGTATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGGTGGCACCACCCGGCCTCCCACGGCaaac                                                                                                                                                                                                                                                             >  2:1364824/1‑286 (MQ=255)
                  gTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTCCTGCCCACGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCCCTCCATCGCCAATa                                                                                                                                                                                                                                                             >  2:2051805/1‑288 (MQ=255)
                  gTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCCCTTCTTCCCATGCGGCGAGCGGTGCTGCCGGTTTCCCCCCCAGCCCTCCACCGGCATTa                                                                                                                                                                                                                                                             >  2:3072486/1‑288 (MQ=255)
                   tATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATa                                                                                                                                                                                                                                                             <  2:1409598/287‑1 (MQ=255)
                    aTCTTGGCAACGACCGTTGGGCGGTTGACGTGGATTATCGAGTTAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCg                                                                                                                                                                                                                                                          <  2:38292/289‑1 (MQ=255)
                    aTCTTCGCCACGACCTTTCGGCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGGTCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTACCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCg                                                                                                                                                                                                                                                          <  1:2600194/289‑1 (MQ=255)
                     tCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGGGCGGTGCTGCCTATGTCACGACCAGCGCTCCAGCGGCAATAcc                                                                                                                                                                                                                                                           >  1:2441189/1‑287 (MQ=255)
                     tCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATAcc                                                                                                                                                                                                                                                           >  1:3078089/1‑287 (MQ=255)
                     tCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATAcc                                                                                                                                                                                                                                                           >  1:1358176/1‑287 (MQ=255)
                     tCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCCCTTCTGCCCATTCGGGGAGCGGTGCTGCCGATTTCACCACCACCGCTCCAGCGGCCATTCCg                                                                                                                                                                                                                                                          >  2:1155948/1‑288 (MQ=255)
                                            ttGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCtt                                                                                                                                                                                                                                  >  1:2226482/1‑289 (MQ=255)
                                                aggtgATTATCGAGATAGCTTTGTCTCACCTTCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGtt                                                                                                                                                                                                                               <  2:1491366/284‑1 (MQ=255)
                                                   ggATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTa                                                                                                                                                                                                                              <  1:1571518/286‑1 (MQ=255)
                                                         tCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATaa                                                                                                                                                                                                                     <  1:457924/289‑1 (MQ=255)
                                                             gaTAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACtt                                                                                                                                                                                                                  <  1:2790288/288‑1 (MQ=255)
                                                                      tttccgcgcttggATGCGGACGACGCGCCGTGGTGTGTTCCTCTTCCGCCCCCGTCGACTGTAAGGAATTCCGTTTGGTTTTCTCCAACGCACCTGTTGAAGAATCGATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGGCCCGCGGTGGTGATTTTACCGCCCTGCGCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTTACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGAt                                                                                                                                                                                                        <  2:582052/278‑1 (MQ=255)
                                                                             cATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAg                                                                                                                                                                                                 <  1:943517/289‑1 (MQ=255)
                                                                             cATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAg                                                                                                                                                                                                 <  1:2488190/289‑1 (MQ=255)
                                                                                cGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGAt                                                                                                                                                                                              <  2:1547583/289‑1 (MQ=255)
                                                                                                gcCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTaa                                                                                                                                                                              >  1:291394/1‑289 (MQ=255)
                                                                                                   gtggtgTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCGAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAata                                                                                                                                                                            >  2:312236/1‑288 (MQ=255)
                                                                                                   gtggtgTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAatat                                                                                                                                                                           >  2:1688722/1‑289 (MQ=255)
                                                                                                            aCCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCt                                                                                                                                                                                                                                                                         >  2:1022130/1‑186 (MQ=255)
                                                                                                            aCCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCt                                                                                                                                                                                                                                                                         <  1:1022130/186‑1 (MQ=255)
                                                                                                            aCCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCgg                                                                                                                                                                                                                                                                  >  2:2086614/1‑193 (MQ=255)
                                                                                                            aCCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCg                                                                                                                                                                   <  2:3078089/288‑1 (MQ=255)
                                                                                                            aCCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCg                                                                                                                                                                   <  2:423061/288‑1 (MQ=255)
                                                                                                             ccTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGtt                                                                                                                                                                 <  1:1688722/289‑1 (MQ=255)
                                                                                                              cTGATCCGCCGTCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGCTTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCATCACCAGCGCTCCAGCGGCAATTCCGCTGTGTTTAATAATTTCACGTCTTGTTAATGTCTTAACTTACTCCTTGATCACCTAGGAACACTGTTTCTCGTTCATATCTTTGGCGttt                                                                                                                                                                >  2:1977890/1‑288 (MQ=255)
                                                                                                                gATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTa                                                                                                                                                                                                                              <  2:2674797/225‑1 (MQ=255)
                                                                                                                 aTCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGt                                                                                                                                                               >  2:713014/1‑287 (MQ=255)
                                                                                                                 aTCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGt                                                                                                                                                               >  1:2156554/1‑287 (MQ=255)
                                                                                                                   ccgccgccgTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTg                                                                                                                                                           >  1:878531/1‑289 (MQ=255)
                                                                                                                   ccgccgccgTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGGCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTg                                                                                                                                                           >  1:3126404/1‑289 (MQ=255)
                                                                                                                     gccgccgTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTg                                                                                                                                                                                                          >  1:587625/1‑240 (MQ=255)
                                                                                                                     gccgccgTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGa                                                                                                                                                         >  1:1793692/1‑289 (MQ=255)
                                                                                                                       cgccgTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGaaa                                                                                                                                                       >  1:1727090/1‑289 (MQ=255)
                                                                                                                                 tGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTa                                                                                                                                             >  2:176484/1‑289 (MQ=255)
                                                                                                                                   tAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTcaccac                                                                                                                                                                                                                                                                                >  2:299741/1‑156 (MQ=255)
                                                                                                                                   tAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATg                                                                                                                                                                                                                           <  2:1848112/209‑1 (MQ=255)
                                                                                                                                   tAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGCTCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTaaa                                                                                                                                           >  1:1526836/1‑289 (MQ=255)
                                                                                                                                   tAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCg                                                                                                                                                                   >  1:645003/1‑265 (MQ=255)
                                                                                                                                   tAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCg                                                                                                                                                                   <  2:2225596/265‑1 (MQ=255)
                                                                                                                                   tAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTaaa                                                                                                                                           >  1:2653823/1‑289 (MQ=255)
                                                                                                                                   tAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTaaa                                                                                                                                           >  1:2086973/1‑289 (MQ=255)
                                                                                                                                         aTTCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTcc                                                                                                                                     >  2:2259354/1‑289 (MQ=255)
                                                                                                                                          ttCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCg                                                                                                                                                                                                                                                          <  1:740404/171‑1 (MQ=255)
                                                                                                                                          ttCGGTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCa                                                                                                                                    >  1:1983602/1‑289 (MQ=255)
                                                                                                                                             ggTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTtaat                                                                                                                                                                                                                                               >  1:1065592/1‑179 (MQ=255)
                                                                                                                                             ggTATGGTTTTCGCCAGCGCGCCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGt                                                                                                                                                               >  2:64280/1‑259 (MQ=255)
                                                                                                                                                      ttCGCCAGCGCGCATGTTTACAAAACACTCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGc                                                                                                                        <  2:3110384/289‑1 (MQ=255)
                                                                                                                                                                cgcCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTtct                                                                                                                                                                                    <  1:480571/219‑1 (MQ=255)
                                                                                                                                                                cgcCTGTTGAAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTtct                                                                                                                                                                                    >  2:480571/1‑219 (MQ=255)
                                                                                                                                                                   ctgttgaaGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCg                                                                                                           <  2:878531/282‑1 (MQ=255)
                                                                                                                                                                                    ctGCCGGCCTTCACTTCTACGCTCACCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCCTGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTgg                                                                                          <  2:1793692/288‑1 (MQ=255)
                                                                                                                                                                                      gCCGTCCTTCACCTTTACGTTCCTCGCTCCCCACCGTCCCGCGGTGAGGATCTTACCCCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCCACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCa                                                                                        <  2:773419/289‑1 (MQ=255)
                                                                                                                                                                                       ccGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCaa                                                                                       >  1:2370332/1‑289 (MQ=255)
                                                                                                                                                                                           ccTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGa                                                                                   <  1:2259354/289‑1 (MQ=255)
                                                                                                                                                                                               cACTTCTACGTTCCTCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCACTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGc                                                                               <  1:2856757/289‑1 (MQ=255)
                                                                                                                                                                                               cACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGc                                                                               <  1:2557833/289‑1 (MQ=255)
                                                                                                                                                                                               cACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCACGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGc                                                                               <  1:2051805/289‑1 (MQ=255)
                                                                                                                                                                                                    cTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACGc                                                                          <  1:1404548/289‑1 (MQ=255)
                                                                                                                                                                                                     tACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCACTACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTCCTCGGTAATATCTTTGGCTTTGTACTGGATATACCGCGTTAAAATGTACAGTTCGGTGTCGCCCATGCTGGTTCGTGCCCCCATTCCTTTGACAATCGACGGACACGc                                                                          >  2:2550331/1‑288 (MQ=255)
                                                                                                                                                                                                     tACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCg                                                                                                                                                                                                                                                          <  2:238938/112‑1 (MQ=255)
                                                                                                                                                                                                     tACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCg                                                                                                                                                                   >  1:1118209/1‑199 (MQ=255)
                                                                                                                                                                                                         ttCATCGCTCCCCAGCGGCCCGCGGTGAGGATTTTACCGCCCTTCCCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACGCATTGa                                                                     <  2:93580/289‑1 (MQ=255)
                                                                                                                                                                                                         ttCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTa                                                                                                                                                                               <  1:686316/183‑1 (MQ=255)
                                                                                                                                                                                                         tgcctCGCCCCCCAACGTCCCGGAGGTAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGTCGATGTCACCCCCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGGTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACGCATTGa                                                                     <  2:1315963/285‑1 (MQ=255)
                                                                                                                                                                                                            aTCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGtt                                                                                                                                                                                                                               <  2:2634848/132‑1 (MQ=255)
                                                                                                                                                                                                            aTCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCCCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTATTGGAAATACCGCGTTAAAATGTTCAGTTCGTTTTCCCCCATGCTGGTTGCTGCCCCCATTCCTTTGGCAACGGACGGCCCCTCATTGACgg                                                                  >  2:2846296/1‑289 (MQ=255)
                                                                                                                                                                                                               gCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACGCATTGAGGgtgt                                                               >  1:1293097/1‑289 (MQ=255)
                                                                                                                                                                                                                 tCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTCGTTCGTTCCCCCATTCCTTTGGCCATGGAAGTCCACGTATTGACGTTTTaa                                                             >  2:520054/1‑289 (MQ=255)
                                                                                                                                                                                                                   cccAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGCAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGtt                                                                                                                             >  2:336973/1‑223 (MQ=255)
                                                                                                                                                                                                                           cccGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCa                                                                                                                                                                                            >  1:190061/1‑152 (MQ=255)
                                                                                                                                                                                                                           cccGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCa                                                                                                                                                                                            <  2:190061/152‑1 (MQ=255)
                                                                                                                                                                                                                              ccgtgtacgATTTTCCCGCCCTTCTCTTCCACCCATGGGTGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACGCATTGACGGTGTAATGGTCGGCGGCaa                                                <  2:1727090/281‑1 (MQ=255)
                                                                                                                                                                                                                               cgGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCaa                                                                                                                                                                                                                                                               >  1:2335778/1‑81 (MQ=255)
                                                                                                                                                                                                                               acgTGAGCATTTTACCTCCCTTCTCCTCTGCCCATGCGGGGGGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACGCATTGACGGTGTAATGGTCGGCGGCAAt                                               <  2:244143/287‑1 (MQ=255)
                                                                                                                                                                                                                                    aGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGCTCCCCCATTCCTTTGGCAATGGACGGCCACGCATTGACGTTGTAATGGTCGGCGGCAAAAgggg                                          >  2:1589823/1‑289 (MQ=255)
                                                                                                                                                                                                                                           tACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGc                                                                               <  2:2339961/245‑1 (MQ=255)
                                                                                                                                                                                                                                                    tctcttctGCCCATGCGGGGAGCGGTGCTGCCGCTGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACGCATTGACGGTGTAATGGTCGGCGGCAATAGGGGCATGACAACCAGCGCa                          <  1:183642/289‑1 (MQ=255)
                                                                                                                                                                                                                                                          ctGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACGCATTGACGGTGTAATGGTCGGCGGCAAt                                               <  2:2596662/262‑1 (MQ=255)
                                                                                                                                                                                                                                                           tGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGCCGGCCACGCATTGACGGTGTAATGGTCGGCGGCACTCGGGGCATGACAACCAGCGCAATAggca                   >  2:2812797/1‑287 (MQ=255)
                                                                                                                                                                                                                                                           tGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTCGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACGCATTGACGGTGTAATGGTCGGCGGCAATAGGGGCATGACAACCCGCGCAATAGGTa                   >  2:2715496/1‑289 (MQ=255)
                                                                                                                                                                                                                                                             cccATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCg                                                                                                                                                                   >  1:407163/1‑143 (MQ=255)
                                                                                                                                                                                                                                                             cccATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACGCATTGACGGTGTAATGGTCGGCGGCAATAGGGGCATGACAACCAGCGCAATAGGTATc                 >  1:2976135/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  gCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGttt                                                                                                                                                                                      <  1:1248526/119‑1 (MQ=255)
                                                                                                                                                                                                                                                                  gCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGc                                                                               >  1:1197570/1‑222 (MQ=255)
                                                                                                                                                                                                                                                                  gCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACGCAt                                                                        <  2:2500132/229‑1 (MQ=255)
                                                                                                                                                                                                                                                                       gAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTT‑TACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACTGCCACGCATTGACGGTTTCATGGTCGGCGGCCATAGGGGCATGACAACCACCGCAATAGGTATCGTCAAGtttt       >  2:2124479/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                        aGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGc                                                                                                                        <  1:546156/175‑1 (MQ=255)
                                                                                                                                                                                                                                                                          cGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACCCATTGACGGTGTAATGGTCGGCGGCAATAGGGGCATGACAACCAGCGCAAAAGGTGTCGGAAAGGTTTTCa    >  2:1063464/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                            gTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCCCTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACGCATTGACGGTGTAATGGTCGGCGGCAATAGGTGCATGACAACCAGCGCCATCGGTATCGTCACGTTTTTCatc  >  1:322981/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                                   |||                                                                                                                                                                                                                                                                                       
CAGCTCACCTGTACATAGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCGCCGTGGTGTGTACCTGATCCGCCGCCGTAGACTGTAAGGAATTCGGTATGGTTTTCGCCAGCGCGCCTGTACTAGAAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCGCTTGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGTTCGTTTTCGCTCATGCTGGTTCGTGCCCCCATTCCTTTGGCAATGGACGGCCACGCATTGACGGTGTAATGGTCGGCGGCAATAGGGGCATGACAACCAGCGCAATAGGTATCGTCAAGTTTTTCAGC  >  CP042583/1637412‑1637968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A