Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,513,137 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,513,1370GC100.0% 512.5 / NA 217intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (110/107);  total (110/107)
*CP0425831,513,1380CG100.0% 509.4 / NA 217intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (110/107);  total (110/107)
*CP0425831,513,1390TA99.5% 507.7 / NA 217intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (110/105);  minor base G (0/1);  total (110/107)
Fisher's exact test for biased strand distribution p-value = 4.91e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 217 total aligned reads displayed.

CGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCGCTGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTACACAATTCACGCAGACCTTGTAAAAACGCGTTGCTGGCTGGCACCACAC  >  CP042583/1512857‑1513414
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                   
cGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAg                                                                                                                                                                                                                                                                               <  1:873115/289‑1 (MQ=255)
cGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAg                                                                                                                                                                                                                                                                               <  2:1901283/289‑1 (MQ=255)
      cattcaccgacgtagcAAAACGCACCACGTGTCCACCCGCAATCAGTACCAGCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGGTTCGCTTGCCCGGCGTAATCGGCAGTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCGGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGCGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGAtt                                                                                                                                                                                                                                                                         <  2:20483/275‑1 (MQ=255)
       actccgcccAGGCCCACAACGCACCACGTTGCCACCCGCAATCCGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTa                                                                                                                                                                                                                                                                        <  2:378649/281‑1 (MQ=255)
       aTTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTa                                                                                                                                                                                                                                                                        <  1:976568/289‑1 (MQ=255)
             cgcAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCa                                                                                                                                                                                                                                                                  >  1:1909841/1‑289 (MQ=255)
                        aaCGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGcc                                                                                                                                                                                                                                                       <  1:1597413/289‑1 (MQ=255)
                           gCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATg                                                                                                                                                                                                                                                    <  1:1524474/289‑1 (MQ=255)
                                                    tACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGgc                                                                                                                                                                                                                            >  1:322915/1‑288 (MQ=255)
                                                    tACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCAACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGgc                                                                                                                                                                                                                            >  2:1769683/1‑288 (MQ=255)
                                                      ccATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCa                                                                                                                                                                                                                         <  2:229114/289‑1 (MQ=255)
                                                        aTCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGcc                                                                                                                                                                                                                                                       <  2:1924719/257‑1 (MQ=255)
                                                          cACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAAACATAGCGGTGATTAATAATATTAAGACGCACAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTCATGAGCTACAGCACTTTGCCTGCCAGCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCGTTCGTGCCACCGGTCACCACGCGGGCGCActct                                                                                                                                                                                                                     >  2:330540/1‑289 (MQ=255)
                                                           aCGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCtt                                                                                                                                                                                                                    <  1:1313193/289‑1 (MQ=255)
                                                            cGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTc                                                                                                                                                                                                                   >  1:1411184/1‑289 (MQ=255)
                                                              ccTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCACCGGTCACCACGCGGGCGCACTCTTCgg                                                                                                                                                                                                                 >  2:1655360/1‑289 (MQ=255)
                                                              ccTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCAcg                                                                                                                                                                                                                                 >  1:1664013/1‑273 (MQ=255)
                                                              ccTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCAcg                                                                                                                                                                                                                                 <  2:1664013/273‑1 (MQ=255)
                                                                            ttCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGc                                                                                                                                                                                                    >  1:172351/1‑288 (MQ=255)
                                                                                         tGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCCGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGaaa                                                                                                                                                                                       >  1:1692653/1‑288 (MQ=255)
                                                                                           tttCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCaa                                                                                                                                                                                                                                            <  1:764612/233‑1 (MQ=255)
                                                                                           tttCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCaa                                                                                                                                                                                                                                            >  2:764612/1‑233 (MQ=255)
                                                                                                   gCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTTGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAg                                                                                                                                                                            <  2:1100074/289‑1 (MQ=255)
                                                                                                        gCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCtt                                                                                                                                                                       >  2:804198/1‑289 (MQ=255)
                                                                                                            aaTCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTgg                                                                                                                                                                    <  1:1056287/288‑1 (MQ=255)
                                                                                                             aTCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACCACGCACCGACCGGGAAACCGCCGCCCCGCGCTTGGGCg                                                                                                                                                                  >  2:839032/1‑289 (MQ=255)
                                                                                                              tCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGAtt                                                                                                                                                                                                                                                                         <  2:980999/185‑1 (MQ=255)
                                                                                                                ggCATTCAGTACACAGCCAATAAGCAAACCTAAGCCGCGAACTTCACTAAACAAACCCTAGCTGGTATTAATAGTATTAAGACGCGCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCAAGCGGATTACCGCCATATGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTa                                                                                                                                                               <  2:1265593/289‑1 (MQ=255)
                                                                                                                   aTTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGAt                                                                                                                                                                                                                                                                          <  1:1573655/179‑1 (MQ=255)
                                                                                                                   aTTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGAt                                                                                                                                                                                                                                                                          >  2:1573655/1‑179 (MQ=255)
                                                                                                                              aGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGCGCTCCAGCACTTTGTCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAgg                                                                                                                                                 >  1:514794/1‑289 (MQ=255)
                                                                                                                              aGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGcc                                                                                                                                                                                                                                                       <  2:304858/187‑1 (MQ=255)
                                                                                                                              aGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCg                                                                                                                                                                  >  2:619170/1‑272 (MQ=255)
                                                                                                                              aGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCg                                                                                                                                                                  <  1:619170/272‑1 (MQ=255)
                                                                                                                                ccAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCg                                                                                                                                               >  1:1880335/1‑289 (MQ=255)
                                                                                                                                ccAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCg                                                                                                                                               >  1:1619733/1‑289 (MQ=255)
                                                                                                                                ccAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGCTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTTCCATGAGTGACAACGGTCATCACGCGGGCGCACTCTTCGGTTCCCAACAACGCACAGATCGGGACACCGCCGCCCAGACCTCTGGCGGTAGGTGACAGATCTggag                                                                                                                                               >  2:968284/1‑287 (MQ=255)
                                                                                                                                   aTCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATCGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCCTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTc                                                                                                                                             >  1:1414834/1‑288 (MQ=255)
                                                                                                                                   aTCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGtt                                                                                                                                                                                                               >  2:1487198/1‑222 (MQ=255)
                                                                                                                                   aTCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGtt                                                                                                                                                                                                               <  1:1487198/222‑1 (MQ=255)
                                                                                                                                   aTCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTc                                                                                                                                             >  2:674820/1‑288 (MQ=255)
                                                                                                                                   aTCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCa                                                                                                                                            <  1:1989289/289‑1 (MQ=255)
                                                                                                                                          aaCCTAAGCGGCGAACTTAACTGACCAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACGTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTa                                                                                                                                     <  2:172351/289‑1 (MQ=255)
                                                                                                                                          aaCCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTa                                                                                                                                     <  2:71066/289‑1 (MQ=255)
                                                                                                                                          aaCCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTa                                                                                                                                     <  2:962826/289‑1 (MQ=255)
                                                                                                                                               aaGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCa                                                                                                                                <  2:1619733/289‑1 (MQ=255)
                                                                                                                                               aaGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCa                                                                                                                                <  1:1970084/289‑1 (MQ=255)
                                                                                                                                               aaGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCa                                                                                                                                <  1:569473/289‑1 (MQ=255)
                                                                                                                                               aaGCAGCGACCTTCACTGAACAAACCATGGCGGTTATTAATAGTATTAAGACGCTCGACAACCCAGTCTTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCa                                                                                                                                <  2:1315239/289‑1 (MQ=255)
                                                                                                                                                   cgcgAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCata                                                                                                                              <  1:804198/287‑1 (MQ=255)
                                                                                                                                                     cgAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTa                                                                                                                                     <  2:885815/278‑1 (MQ=255)
                                                                                                                                                     cgAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACAGCAATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCACAGCGCTTTGGCGGTAGTTAACAGATAAGGCGTCACGCCGTAGTGCATATAgg                                                                                                                          >  1:1824229/1‑289 (MQ=255)
                                                                                                                                                       aaCTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAAccg                                                                                                                                                                                    <  1:967358/229‑1 (MQ=255)
                                                                                                                                                                gAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTcc                                                                                                               <  1:1339025/289‑1 (MQ=255)
                                                                                                                                                                      aCCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTg                                                                                                         <  2:489144/289‑1 (MQ=255)
                                                                                                                                                                           aGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCCCGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGTCGGTAGTTAACCGATCAGGCGTCCCGCCGTAGTGCATATCGGCCGACCGTTCCCCGGtcgtcc                                                                                                     >  2:94607/1‑283 (MQ=255)
                                                                                                                                                                           aGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGccc                                                                                                    >  1:995882/1‑289 (MQ=255)
                                                                                                                                                                                tGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACg                                                                                                >  1:922580/1‑288 (MQ=255)
                                                                                                                                                                                  aTTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCg                                                                                                                                                                  <  2:143520/220‑1 (MQ=255)
                                                                                                                                                                                  aTTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCg                                                                                                                                                                  >  1:143520/1‑220 (MQ=255)
                                                                                                                                                                                          tATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGCGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGcc                                                                                                     <  2:579820/273‑1 (MQ=255)
                                                                                                                                                                                            ttAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCa                                                                                                                                <  1:889872/244‑1 (MQ=255)
                                                                                                                                                                                                 aCGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTtcat                                                                                <  2:390893/287‑1 (MQ=255)
                                                                                                                                                                                                 aCGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTtcat                                                                                >  1:390893/1‑287 (MQ=255)
                                                                                                                                                                                                    cTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGCGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACCCACCGACCGGGAAACCGCCGCCCAGCCCTTTGCCGCTAGTTAACAGATCAGGCGTCACGCCGTCGTCCAGCTAGGCATACAGTTCCCCGGTTCCCCCGACGCCGGGTTGTACGtcatccaca                                                                           >  2:127970/1‑285 (MQ=255)
                                                                                                                                                                                                    cTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACg                                                                                                >  2:193699/1‑268 (MQ=255)
                                                                                                                                                                                                    cTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACg                                                                                                <  2:195066/268‑1 (MQ=255)
                                                                                                                                                                                                    cTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACg                                                                                                >  1:195066/1‑268 (MQ=255)
                                                                                                                                                                                                    cTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACg                                                                                                <  1:193699/268‑1 (MQ=255)
                                                                                                                                                                                                    cTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCaaaa                                                                           >  1:278338/1‑289 (MQ=255)
                                                                                                                                                                                                          aaaCCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGTTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAAc                                                                     >  2:104844/1‑289 (MQ=255)
                                                                                                                                                                                                           aaCCAGTCGTGACGCTGTTTAACGCCATTCAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACa                                                                    <  1:1199399/289‑1 (MQ=255)
                                                                                                                                                                                                            aCCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACa                                                                    >  2:957184/1‑288 (MQ=255)
                                                                                                                                                                                                                 tCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGttt                                                                                         <  2:262711/262‑1 (MQ=255)
                                                                                                                                                                                                                     gACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATtgt                                                           <  2:920239/288‑1 (MQ=255)
                                                                                                                                                                                                                             ttAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTac                                                  <  2:1986131/289‑1 (MQ=255)
                                                                                                                                                                                                                             ttAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTac                                                  <  1:957184/289‑1 (MQ=255)
                                                                                                                                                                                                                                 cGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTACACaa                                              >  2:1207334/1‑289 (MQ=255)
                                                                                                                                                                                                                                 cGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTACACaa                                              >  1:521757/1‑289 (MQ=255)
                                                                                                                                                                                                                                  gCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTACACAAt                                             <  1:383773/289‑1 (MQ=255)
                                                                                                                                                                                                                                  gCCAGTAAGCATCGCGGGTGGGTTCAGACGCTCGAGGACTTTGCGTGCCATCGCCGCGGCCAGGGGATTACCGCCGTAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAAAAACGCGCCGAGCGGGAAACCGCCGCCGAGCGCTATGGCGGTAGTTAACAGATCAGGCGTCGCGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTACACAAt                                             <  2:89371/289‑1 (MQ=255)
                                                                                                                                                                                                                                      ttAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTTCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTCAGGCGGTTACCCAATTCa                                          >  2:1414238/1‑288 (MQ=255)
                                                                                                                                                                                                                                      ttAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTACACAATTCa                                          >  2:1502946/1‑288 (MQ=255)
                                                                                                                                                                                                                                      ttAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTACACAATTCa                                          >  1:1111473/1‑288 (MQ=255)
                                                                                                                                                                                                                                      ttAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTACACAATTCAc                                         >  1:68360/1‑289 (MQ=255)
                                                                                                                                                                                                                                       tAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTACACAATTCACg                                        <  1:843930/289‑1 (MQ=255)
                                                                                                                                                                                                                                       tAAGCATCTCTGGGGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTACACAATTCACg                                        <  1:1264584/289‑1 (MQ=255)
                                                                                                                                                                                                                                              ctctGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGt                                                                                           >  1:1745023/1‑231 (MQ=255)
                                                                                                                                                                                                                                                ctGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTa                                                                                                                                                                                                                                                                        >  2:1369689/1‑56 (MQ=255)
                                                                                                                                                                                                                                                ctGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTa                                                                                                                                                                                                                                                                        <  1:1369689/56‑1 (MQ=255)
                                                                                                                                                                                                                                                ctGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTac                                                  <  1:251797/270‑1 (MQ=255)
                                                                                                                                                                                                                                                        ttGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCg                                                                                                                                       <  2:1291505/177‑1 (MQ=255)
                                                                                                                                                                                                                                                        ttGATGAGCTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGGTACACAATTCACGCAGAACTTTTAAAAAc                        >  1:468432/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                cTCCAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTACACAATTCACGCAGACCTTGTAAAAACGCGTTgctg               >  1:1641385/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  ccAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTgg                                                         <  1:171357/245‑1 (MQ=255)
                                                                                                                                                                                                                                                                  ccAGCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTgg                                                         >  2:171357/1‑245 (MQ=255)
                                                                                                                                                                                                                                                                     gCACTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCg                                                                                                                                       >  1:69779/1‑164 (MQ=255)
                                                                                                                                                                                                                                                                        cTTTGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGtcatca                                                                                                                                                                                                                                   >  2:521502/1‑69 (MQ=255)
                                                                                                                                                                                                                                                                          ttGCCTGCCACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTACACAATTCACGCAGACCTTGTAAAAACGCGTTGCTGGCTGGcccc      >  1:1040169/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                              ctgccACCGCCGAGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTACACAATTCACGCAGACCTTGTAAAAACGCGTTGCTGGCTGGCACCacac  <  1:127970/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                   
CGCTGACATTGAGCGCAGGCGCAAAACGCACCACGTTGCCACCCGCAATCAGTACCATCACGCCTGCTTTCGCCGCTTCCTGAGAGATCTGTTTCGCTTGCCCGGCGTAATCGGCATTCAGTACACAGCCAATCAGCAAACCTAAGCCGCGAACTTCACTGAACAAACCATAGCGGTGATTAATAGTATTAAGACGCTCAACAAACCAGTCGTGACGCTGTTTAACGCCATTAAGCATCTCTGGTGTGTTGATGAGCTCCAGCACTTTGCCTGCCACCGCGCTGGCCAGCGGATTACCGCCATAGGTGGTGCCATGAGTGCCAACGGTCATCACGCGGGCGCACTCTTCGGTTGCCAACAACGCACCGACCGGGAAACCGCCGCCCAGCGCTTTGGCGGTAGTTAACAGATCAGGCGTCACGCCGTAGTGCATATAGGCATACAGTTCCCCGGTGCGCCCGACGCCGGTTTGTACTTCATCAAAAATCAACAGCGCATTGTGGCGGTTACACAATTCACGCAGACCTTGTAAAAACGCGTTGCTGGCTGGCACCACAC  >  CP042583/1512857‑1513414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A