Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,669,271 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,669,2710GC99.6% 570.2 / NA 243intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (130/112);  total (130/113)
Fisher's exact test for biased strand distribution p-value = 4.65e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,669,2720CG99.6% 561.5 / NA 243intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (129/113);  total (130/113)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,669,2730TA98.3% 548.9 / NA 243intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (125/112);  minor base C (4/0);  total (130/113)
Fisher's exact test for biased strand distribution p-value = 1.26e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 243 total aligned reads displayed.

ACCAGCACGATGCGTTCACGGTGCTGCGGCAGAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGGCTGTTCTTTTTGCTTACGCCAGCCAGGCTAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAATGCTTTCAAAACCGCGACGGATGCCGC  >  CP042583/1668996‑1669551
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                       
        gATGCGTTCACGGTGCTGCGGCAGAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACgcc                                                                                                                                                                                                                                                                       >  1:210942/1‑288 (MQ=255)
               tCACGGTGCTGCGGCAGAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGccagccagcg                                                                                                                                                                                                                                                               >  1:1317370/1‑287 (MQ=255)
                      tcttgggCTGAAAATGTTTGCCGTCGATTATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATgg                                                                                                                                                                                                                                                        <  2:1430186/284‑1 (MQ=255)
                      gctgcGGCAGAAAAGGTTTGCCGTGAATGATTTTCGGATCGTCTGGCCCCTTTTCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGccagccagcgaaaatg                                                                                                                                                                                                                                                         <  2:868601/288‑9 (MQ=255)
                        tgcGGCAGAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGccagccagcgaaaatg                                                                                                                                                                                                                                                         >  1:666174/1‑278 (MQ=255)
                           ggCAGAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGAc                                                                                                                                                                                                                                                   <  2:824744/289‑1 (MQ=255)
                               gAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAgg                                                                                                                                                                                                                                               >  1:449315/1‑289 (MQ=255)
                               gAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCCGACAAgg                                                                                                                                                                                                                                               >  1:328971/1‑289 (MQ=255)
                               gAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACAGTGCGCCCGCCCGAGCGCGTTCTTTTTCGACACGCCAGCCAGCGAAAATGGCTCACAAgg                                                                                                                                                                                                                                               >  2:506161/1‑289 (MQ=255)
                                              cGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCAAGTTCGTCCAGCGTCTGCATGATCATGCGGAACGTTTTACCCTGGTCGTGACTCTTCAGGTTTTTGACGTGTTCGAGCACAAACATCGCCGGACGACCCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAAACGTGCGCCCGCCCGAGCCAGTTCTTTTTCGATACGCCAGCAACCGAAAATGGCTGACAACGGACACCGGCCAGTaa                                                                                                                                                                                                                                >  2:931916/1‑289 (MQ=255)
                                                  gatTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACa                                                                                                                                                                                                                            <  1:994487/289‑1 (MQ=255)
                                                    ttttCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATc                                                                                                                                                                                                                          <  2:453046/289‑1 (MQ=255)
                                                    ttttCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATc                                                                                                                                                                                                                          <  2:666174/289‑1 (MQ=255)
                                                    tgtttggttCGTCTGGTCCATTATCTTGTGCATCAGCCACGTCATAGCCCCGTTCGTCCATCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGGTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATc                                                                                                                                                                                                                          <  2:1271490/281‑1 (MQ=255)
                                                      tgcGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCgt                                                                                                                                                                                                                        <  1:1369182/287‑1 (MQ=255)
                                                       tCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCgtg                                                                                                                                                                                                                       >  2:1776194/1‑289 (MQ=255)
                                                           aTCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATc                                                                                                                                                                                                                          >  1:1757321/1‑282 (MQ=255)
                                                               tCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGaa                                                                                                                                                                                                              >  2:1757551/1‑289 (MQ=255)
                                                                cTGGCCCATTAGCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAAt                                                                                                                                                                                                             <  1:389649/289‑1 (MQ=255)
                                                                        ttATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGCGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGGTACGGGAAACCGGCCAGTAAAACATCGCGTTCA‑GGAATGTGTTGAc                                                                                                                                                                                                     >  2:1158227/1‑289 (MQ=255)
                                                                              tctGCATCAGCCACGTCATAGCCCACTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGCTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGAGTCGATAATGCGTACCACATCAAAAAACAGC‑GTACCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACCCCAGCCAGCGAACATGGCTGACAAGGGAAACGGGCCACACAAACATCGTGTCCA‑GGAACGTGTTGACGAatat                                                                                                                                                                                               >  2:598085/1‑289 (MQ=255)
                                                                                tGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGCCTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGCCGACGCCCGTCGCTAATACGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAAACGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAACGGCTGACACAGGAAACCGGCCGATACAACACGGCGTTCA‑GGAATGGGTTGACTAaaattt                                                                                                                                                                                             >  2:1668499/1‑287 (MQ=255)
                                                                                  cATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGAGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGCTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGCGTTCA‑GGAATGTGTGGACGAATATGtt                                                                                                                                                                                            >  1:1012137/1‑288 (MQ=255)
                                                                                     cAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACCCCACCCAGCGAAAATGGCTGACAAGGGAAACCGGACAGTAAAACATC‑TGGTCAGGGACTGTGTTGACGAATCTTTTccc                                                                                                                                                                                         >  2:1061078/1‑287 (MQ=255)
                                                                                       gCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGtt                                                                                                                                                                                                        <  1:907569/271‑1 (MQ=255)
                                                                                       gCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTccgcc                                                                                                                                                                                       >  2:1691408/1‑288 (MQ=255)
                                                                                          aCGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTccgccgcc                                                                                                                                                                                    >  1:1189134/1‑288 (MQ=255)
                                                                                            gTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCttt                                                                                                                                                                                                                                                                                  >  2:258760/1‑193 (MQ=255)
                                                                                                tcccccAGTTCGTCGCGCGTCTGCATGGTTGTGCGGAACGTTTTCCCCTGGTCGTGACTTTGCAGGTTTTTGCCGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCtcat                                                                                                                                                                             <  2:151678/286‑1 (MQ=255)
                                                                                                  gCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCtcatc                                                                                                                                                                            >  2:279577/1‑288 (MQ=255)
                                                                                                      aGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCAtccctc                                                                                                                                                                        >  1:1211557/1‑288 (MQ=255)
                                                                                                       gTTCGTCCAGCGTCTGCATGATTATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTCGGTCTTGCAGGCAAAACCGTGCGCCCGCCAGCGCGAGTCCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACTTCGTGTTCC‑GGAATGTGTGTCCGATTATGTTCCGCCGCCGCCCCAtccctcc                                                                                                                                                                       >  2:132047/1‑287 (MQ=255)
                                                                                                        ttCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGa                                                                                                                                                                                                      >  1:75179/1‑256 (MQ=255)
                                                                                                        ttCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCAtcactcac                                                                                                                                                                      >  1:353575/1‑288 (MQ=255)
                                                                                                        ttCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCAtcactcac                                                                                                                                                                      >  1:1898720/1‑288 (MQ=255)
                                                                                                        ttCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCAtcactcac                                                                                                                                                                      >  1:790245/1‑288 (MQ=255)
                                                                                                          cGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGcc                                                                                                                                                                   <  1:1764102/289‑1 (MQ=255)
                                                                                                          cGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGcc                                                                                                                                                                   <  1:1619357/289‑1 (MQ=255)
                                                                                                          cGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGcc                                                                                                                                                                   <  1:1681219/289‑1 (MQ=255)
                                                                                                          cGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGACAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGcc                                                                                                                                                                   <  2:1359852/289‑1 (MQ=255)
                                                                                                             cccgCGTCTGCCTGTTGGTGCGGGACGTTTTACCCTTGTCGTGACTTTTCGGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGAGGGGCGTCGGTAATGCTTACCGCATCGAAGAACAGC‑GTGCCCTGAGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCGCTCACGCctt                                                                                                                                                                 <  2:73647/285‑1 (MQ=255)
                                                                                                                 cGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAACCATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACCCACGCCTTCTTTa                                                                                                                                                            >  1:715103/1‑289 (MQ=255)
                                                                                                                  gTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTAt                                                                                                                                                           >  1:1824109/1‑289 (MQ=255)
                                                                                                                     tGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATg                                                                                                                                                          >  1:1034770/1‑287 (MQ=255)
                                                                                                                               tgCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACAGGCCAGTAAAACATCGTGTTCA‑GGAAAGGGTTGACGAATATGTTCCCCCGCCGCCTCTACACCCACGCCTTCCTCATCGCTGCGGGttgt                                                                                                                                              >  2:389837/1‑286 (MQ=255)
                                                                                                                                 cGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGcc                                                                                                                                                                   <  1:1708793/266‑1 (MQ=255)
                                                                                                                                      cGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATc                                                                                                                                                                                                                          <  2:1726973/207‑1 (MQ=255)
                                                                                                                                           tccccTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATc                                                                                                                                  <  1:811232/287‑1 (MQ=255)
                                                                                                                                              ccTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGa                                                                                                                                                                                                   >  1:695570/1‑221 (MQ=255)
                                                                                                                                                  gTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGtt                                                                                                                                                                                                        <  2:141334/212‑1 (MQ=255)
                                                                                                                                                  gTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGcc                                                                                                                                                                   <  2:1453155/249‑1 (MQ=255)
                                                                                                                                                  gTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGGGGGTGATTTCGCGGATATCTTCATTa                                                                                                                           >  1:1083790/1‑289 (MQ=255)
                                                                                                                                                  gTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTa                                                                                                                           >  1:525836/1‑289 (MQ=255)
                                                                                                                                                  gTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGACGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGAGGATATCTTCATTa                                                                                                                           >  1:1112396/1‑289 (MQ=255)
                                                                                                                                                   tCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTa                                                                                                                                                            <  2:1977917/255‑1 (MQ=255)
                                                                                                                                                       gACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGGCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACAACGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCCGAGGGTGATGTCGCGGATATTTTTATTAAAatg                                                                                                                      >  1:54179/1‑289 (MQ=255)
                                                                                                                                                            ttCAGGTTTTTGACGGTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCg                                                                                                                 >  1:288729/1‑289 (MQ=255)
                                                                                                                                                                    tttGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATTGCTGGGGGTGATTTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGa                                                                                                         >  2:942866/1‑289 (MQ=255)
                                                                                                                                                                    tttGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑ATGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGa                                                                                                         >  2:1084746/1‑289 (MQ=255)
                                                                                                                                                                     ttGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGAt                                                                                                        <  1:731252/289‑1 (MQ=255)
                                                                                                                                                                     ttGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGAt                                                                                                        <  2:1898720/289‑1 (MQ=255)
                                                                                                                                                                       gACGGTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCg                                                                                                      <  2:288729/289‑1 (MQ=255)
                                                                                                                                                                          gTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCCTACCACACCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGATCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCaa                                                                                                   <  1:100777/289‑1 (MQ=255)
                                                                                                                                                                           cttgcGAGCAACAACACCGCCAGACGCCGCGCGTCGATGATACGTACGCCCACACAGTACAGC‑GTGCCCTGGGTATCCCAGGCACAACCGTGCGCCCGCCCGAGCGGGTTCTTTTTCGCTACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑AGAATGGGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCaat                                                                                                  <  2:149614/285‑1 (MQ=255)
                                                                                                                                                                            ttccGAGCACAAACAGCGCCGGACGCCGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCaata                                                                                                 <  2:353575/286‑1 (MQ=255)
                                                                                                                                                                             ttCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCCGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCaataa                                                                                                >  1:24933/1‑289 (MQ=255)
                                                                                                                                                                                  ccacaAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGtt                                                                                           <  1:1573184/288‑1 (MQ=255)
                                                                                                                                                                                    acaAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGtt                                                                                           <  1:1971335/287‑1 (MQ=255)
                                                                                                                                                                                    acaAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATAGGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGtt                                                                                           <  1:1158227/287‑1 (MQ=255)
                                                                                                                                                                                     caAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGcc                                                                                                                                                                   <  2:781193/214‑1 (MQ=255)
                                                                                                                                                                                      gacggtCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATAAAAATGATGCGTCGCCGGATCGCAATAATGGTTgg                                                                                         <  1:1422269/282‑1 (MQ=255)
                                                                                                                                                                                                  acgacgCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGa                                                                                                                                                                                                                                                    <  2:1830549/121‑1 (MQ=255)
                                                                                                                                                                                                  acgacgCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATTCGTCCCCGGATCGCAAATATGGTTGGCTGTATAATTGCGt                                                                           >  2:1010437/1‑289 (MQ=255)
                                                                                                                                                                                                  acgacgCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTtata                                                                                  <  1:94021/282‑1 (MQ=255)
                                                                                                                                                                                                  acgacgCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCg                                                                            <  1:1645537/288‑1 (MQ=255)
                                                                                                                                                                                                      cggccgTCGATACTGCGTACCGCATACAAAGACAGC‑GTGCCCTGGTTATCGCAGGCAAAACCGTGCGCCCGCCAGAGCGAGTGTTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCGTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCg                                                                       <  2:54179/285‑1 (MQ=255)
                                                                                                                                                                                                      cgcgcgTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTGTGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTAcc                                                                        >  1:1788926/1‑288 (MQ=255)
                                                                                                                                                                                                            tCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATc                                                                                                                                                                                                                          <  2:1939897/137‑1 (MQ=255)
                                                                                                                                                                                                            tCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATc                                                                                                                                                                                                                          >  1:1939897/1‑137 (MQ=255)
                                                                                                                                                                                                                   tGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCa                                                          >  1:267536/1‑289 (MQ=255)
                                                                                                                                                                                                                       tACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCTGTAAAACATCGTGTTCA‑GGGATGTGTTGACGGATATGTTTCGCCGCCGCCTCATCACTCACGCCGTCTCTAAGGCTGAGGGTGGTGTCGCGGATATCTTCATTTAAATGATGCGTCGCCGGAGCGCAAGAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTc                                                       >  1:599034/1‑288 (MQ=255)
                                                                                                                                                                                                                       tACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAatgatg                                                                                                                   <  1:1554326/228‑1 (MQ=255)
                                                                                                                                                                                                                        aCCACATCAAAAAA‑AGCGGTGCCCTGGGTATCGCAGGCAAACCCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCg                                                      <  2:1035852/288‑1 (MQ=255)
                                                                                                                                                                                                                          cacaTCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGAt                                                                                                        <  2:1094264/236‑1 (MQ=255)
                                                                                                                                                                                                                           acaTCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATc                                                                                                                                  <  2:700173/209‑1 (MQ=255)
                                                                                                                                                                                                                             aTCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTa                                                >  1:1864051/1‑289 (MQ=255)
                                                                                                                                                                                                                               cAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGatat                                                                                                                                   >  1:1447126/1‑204 (MQ=255)
                                                                                                                                                                                                                               cAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTaaa                                              >  1:1658918/1‑289 (MQ=255)
                                                                                                                                                                                                                                 aaaaaCAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGCGCGCCCGCCCGAGCGAGTTCTCTTTCGATACGCCAGTCACCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGGGTTCC‑GGACTGTGTTGACGAATATGTGCCGCTGCCGCCTCATCACTCACGCATTCTTTATGGCTGAGGGGTATGTCGCGGTCATCTTCATTAAAATGATGCGTCGACGGAGCTCAATAATGGATGGCGTTAAAAGTTGGTACCGAATGTTTGTTCCATGCGCTGGTAAac                                             >  2:1917307/1‑288 (MQ=255)
                                                                                                                                                                                                                                   aaaCAGC‑GAGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGACAGCGAAAAAGGGTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCAGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACg                                          <  1:1091847/289‑1 (MQ=255)
                                                                                                                                                                                                                                        gC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTgg                                                  <  1:616987/276‑1 (MQ=255)
                                                                                                                                                                                                                                         c‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGCTATCTTCATTAAAATGATGCGTCGCCGGATCGCCATAATGGTTGGCTTTTTAAGTGCGTACCCGATGTTTTGTCCCTTCCCTGGTAAACAAGCa                                        >  2:1862966/1‑285 (MQ=255)
                                                                                                                                                                                                                                         c‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCg                                                                            <  1:1074239/249‑1 (MQ=255)
                                                                                                                                                                                                                                         c‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTg                                     >  2:679356/1‑288 (MQ=255)
                                                                                                                                                                                                                                           ggggccTGGTTATCGCAGGCAAACCCGTGCGCCCGCCCGCGGGAGTTCTTGTTCGATACGCCAGACAGCGAAAATGGCTGACAAGGGAAACCTGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCAc                                       <  2:1227050/281‑1 (MQ=255)
                                                                                                                                                                                                                                           gTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCAc                                       <  1:1488028/285‑1 (MQ=255)
                                                                                                                                                                                                                                                   ggTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTTTTCCATTCGCCTGGAAACACGCa                                        >  2:616987/1‑276 (MQ=255)
                                                                                                                                                                                                                                                   ggTATCGAAGGCAAAACCGTGCGTCCGCCCGAGCGAGTTCTTTGTCGATACGCCGGCCAGCGAAAATGGCTGACAAGGGAAACAGGCCAGTAAAACATCGTGTTCA‑GGACTGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAAt                            <  2:726468/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                      tGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTgg                                                                                         >  1:85254/1‑208 (MQ=255)
                                                                                                                                                                                                                                                                      tGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTgg                                                                                         <  2:85254/208‑1 (MQ=255)
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                       
ACCAGCACGATGCGTTCACGGTGCTGCGGCAGAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGGCTGTTCTTTTTGCTTACGCCAGCCAGGCTAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCA‑GGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAATGCTTTCAAAACCGCGACGGATGCCGC  >  CP042583/1668996‑1669551

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A