Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,517,339 3 bp→TCA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,517,3390AT99.7% 753.3 / NA 313intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (152/160);  minor base G (0/1);  total (152/161)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,517,3400GC99.4% 736.7 / NA 313intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (151/159);  minor base T (1/1);  total (152/161)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,517,3410TA98.7% 732.2 / NA 313intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/0);  major base A (149/159);  minor base C (2/2);  total (152/161)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 313 total aligned reads displayed.

CTACCTGCGTTTTTGATCACCTTTGCCAATGCGAGCCTGTTTGGCGCGTTCTGGGGCGGCTTGCTGAGCTGGACCAGTAGCATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTAGTATACGT‑TTTCGCAGCTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTA  >  CP042583/1517066‑1517619
                                                                                                                                                                                                                                                                                 |||                                                                                                                                                                                                                                                                                       
cTACCTGCGTTTTTGATCACCTTTGCCAATGCGTCGCTGTTTGGCGCGTTCTGGGGCGGCTTGCTGTCGTGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATTCTGCCGGTTTTACTTCTATCCGT‑TTTCGc                                                                                                                                                                                                                                                                            >  2:400343/1‑288 (MQ=255)
cTACCTGCGTTTTTGATCACCTTTGCCAATGCGTCGCTGTTTGCCGCGTTCTGGGGCGGCTTGCTGTCGTGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAACACCGTGCTTGACAGTATGGACGGATTTTTCACTCGATACGGCAAACACACCATTCTGGTTTGTCGGTTATTCCCTTTTGTCCCTTTCGATCCAATCAGCTATGCCGCCGGTTTGACTTTCATAAGT‑TTTCGc                                                                                                                                                                                                                                                                            >  1:2398053/1‑288 (MQ=255)
  aCCTGCGTTTTTGATCACCTTTGCCAATGCGTCGCTGTTTGGCGCGTTCTGGGGCGGCTTGCTGTCGTGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCgatcg                                                                                                                                                                                                                                                                         >  1:1912184/1‑285 (MQ=255)
                      ttGCCAATGCGTCGCTGTTTGGCGCGTTCTGGGGCGGCTTGCTGTCGTGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCCCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCACTACGT‑TTTTGCTCGTTTTTTATCGCCACAGGGcg                                                                                                                                                                                                                                                     >  2:90547/1‑288 (MQ=255)
                       tGCCAATGCGTCGCTGTTTGGCGCGTTCTGGGGCGGCTTGCTGTCGTGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCtt                                                                                                                                                                                                                                                    >  1:913173/1‑289 (MQ=255)
                              gcgtcgcTGTTTGGCGCGTTCTGGGGCGGCTTGCTGTCGTGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGt                                                                                                                                                                                                                                             >  1:2645964/7‑289 (MQ=255)
                              gcgtcgcTGTTTGGCGCGTTCTGGGGCGGCTTGCTGTCGTGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGt                                                                                                                                                                                                                                             >  1:2015331/7‑289 (MQ=255)
                                gtcgcTGTTTGGCGCGTTCTGGGGCGGCTTGCTGTCGTGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGtt                                                                                                                                                                                                                                            >  1:1842966/5‑288 (MQ=255)
                                     tggttGGCGGGTTCTGGGGCGGTTTGCTTTCGTGGACCAGTTCGATGGGCGGCGGGGCGGTGTGTTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGc                                                                                                                                                                                                                                      <  2:466304/286‑1 (MQ=255)
                                     tGTTTGGCGCGTTCTGGGGCGGCTTGCTGTCGTGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGc                                                                                                                                                                                                                                      <  1:400343/289‑1 (MQ=255)
                                     tGTTTGGCGCGTTCTGGGGCGGCTTGCTGTCGTGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGc                                                                                                                                                                                                                                      <  1:713164/289‑1 (MQ=255)
                                          ggggggtgcTGGGGGTGCTTGCTGTCGTGGACCCGTGCGGTGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTa                                                                                                                                                                                                                                 <  2:4299/281‑1 (MQ=255)
                                           ggcggTTCTGGGGGGGCTTGGTGTCTGGGACCAGTTGGGTGGCCGACGGGGCGCTGTGCTTTTTTATCGCCAGAGGGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTa                                                                                                                                                                                                                                 <  2:2513/284‑1 (MQ=255)
                                                          gcTTGCTGTCGTGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGt                                                                                                                                                                                                                                                 >  1:1489195/1‑257 (MQ=255)
                                                          gcTTGCTGTCGTGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTAcc                                                                                                                                                                                                                                         >  2:19350/1‑265 (MQ=255)
                                                          gcTTGCTGTCGTGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTggg                                                                                                                                                                                                                  <  2:162874/288‑1 (MQ=255)
                                                              gctggcgtGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTgggcgggc                                                                                                                                                                                                             <  1:1965046/282‑1 (MQ=255)
                                                                    gtGGACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGc                                                                                                                                                                                                                                      <  2:563772/257‑1 (MQ=255)
                                                                       gACCAGTTCGATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTa                                                                                                                                                                                                    >  1:1401216/1‑289 (MQ=255)
                                                                         ccagttcgaTGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTaa                                                                                                                                                                                                   <  1:2564597/280‑1 (MQ=255)
                                                                            gttcgaTGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGCAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACGAGCTACGACAAACAAACCATTCGGGTCTGTCGGTTATTGCCTTTTGTCACTGTCGATCCAATCAGCTATGCTTCCGGTTTGAATTCATTACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCATTTATCGGCAACTATCGATTATTCCTGGGCGGGCAGCATGTTAACacg                                                                                                                                                                                               >  2:1686407/6‑287 (MQ=255)
                                                                            gttcgaTGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAgg                                                                                                                                                                                               >  1:554084/6‑289 (MQ=255)
                                                                             tgcggtGGCCGGCGCGTGGCTGGGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAgg                                                                                                                                                                                               <  2:732845/283‑1 (MQ=255)
                                                                              tcgaTGGCGGGCGGGGCGCTGTGGTTTTTTATCGCCAGAGTGATGGGCCGTGAAGTGGTGGAAAAATTAACCGGCAAAACCGGGCTTGACAGTATGGCCGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCg                                                                                                                                                                                             <  2:1912184/286‑1 (MQ=255)
                                                                              tcgaTGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCg                                                                                                                                                                                             <  2:1025663/286‑1 (MQ=255)
                                                                                              cgcTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGt                                                                                                                                                                             >  1:1543244/1‑289 (MQ=255)
                                                                                                   tgCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCg                                                                                                                                                                        >  1:2681882/1‑289 (MQ=255)
                                                                                                    gCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCgg                                                                                                                                                                       <  1:416161/289‑1 (MQ=255)
                                                                                                    gCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCgg                                                                                                                                                                       <  1:2720627/289‑1 (MQ=255)
                                                                                                    gCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCgg                                                                                                                                                                       <  2:1512538/289‑1 (MQ=255)
                                                                                                        ttttATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCgg                                                                                                                                                                       >  1:2417917/1‑285 (MQ=255)
                                                                                                             tCGCCAGAGTGATGGGCAGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGATCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCTACTATTTTTTATTCCTTCGCGGGCCGCATTTTAACAGGGGGTACTTTCTGGTTTTTTACCGGACTGTTTAt                                                                                                                                                              >  2:244497/1‑289 (MQ=255)
                                                                                                                 cAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCTGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTg                                                                                                                                                          <  2:1297948/289‑1 (MQ=255)
                                                                                                                  gacttGATGGGCCGCGAAGGGGTGGAAAAATTACCCTGCAAAACCGTGCTTGAAAGTATGGACGGCTTTTTCACTCTCTCCGGCAAACACACCATTCTGTTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCATTCAGCTATGCTGCCGGTTTGACTTCAATACGT‑GTTCGTTCGTTTTTTGTCGCCACCAGGCTTGGTCAGTTACCGGAAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGTACTGTGTATTCTGt                                                                                                                                                         <  2:612369/285‑1 (MQ=255)
                                                                                                                   gagTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGt                                                                                                                                                         <  2:1241576/288‑1 (MQ=255)
                                                                                                                       gATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGcc                                                                                                                                                    <  2:1842966/289‑1 (MQ=255)
                                                                                                                              cgcgAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAAAAGGCCGTACTTTCTTGTTCGTCACCGGCCTGTTTATTTTATTTCCCCTGTCCg                                                                                                                                             >  2:2356943/1‑289 (MQ=255)
                                                                                                                                cgAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGgcagc                                                                                                                                                                                                          >  1:2206111/1‑226 (MQ=255)
                                                                                                                                cgAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGgcagc                                                                                                                                                                                                          <  2:2206111/226‑1 (MQ=255)
                                                                                                                                cgAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCgtg                                                                                                                                           >  2:1365287/1‑289 (MQ=255)
                                                                                                                                cgAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCgtg                                                                                                                                           >  2:511954/1‑289 (MQ=255)
                                                                                                                                cgAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCgtg                                                                                                                                           >  1:847647/1‑289 (MQ=255)
                                                                                                                                                               gTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTg                                                                                                            <  1:1793667/289‑1 (MQ=255)
                                                                                                                                                                    tGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGc                                                                                                       <  1:1934499/289‑1 (MQ=255)
                                                                                                                                                                    tGACAGGATGGACGGCTTTTTCCCTCGGTACGGCAAACGCGCCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGc                                                                                                       <  2:2539245/289‑1 (MQ=255)
                                                                                                                                                                             ggACGGCTTTTTCACTCGCTACGGCAAACCCACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCATTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAgg                                                                                              <  1:289270/289‑1 (MQ=255)
                                                                                                                                                                             ggACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGt‑tt                                                                                                                                                                                                                                                                                <  2:326516/111‑1 (MQ=255)
                                                                                                                                                                               aCGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGaa                                                                                            >  2:2011730/1‑289 (MQ=255)
                                                                                                                                                                                cGGCTTTTTCACTCGCTACGGCAAACACACCTTTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCATTCAGCTATGCTTCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGaa                                                                                            <  1:1686407/288‑1 (MQ=255)
                                                                                                                                                                                 ggCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGt                                                                                                                                                                                                                                                 <  2:1180827/138‑1 (MQ=255)
                                                                                                                                                                                 ggCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATg                                                                                          <  1:603709/289‑1 (MQ=255)
                                                                                                                                                                                    tttttCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCagaag                                                                                                 >  1:2123107/1‑279 (MQ=255)
                                                                                                                                                                                    tttttCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATg                                                                                          >  1:498260/1‑286 (MQ=255)
                                                                                                                                                                                       ttCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGAt                                                                                    <  2:1071336/289‑1 (MQ=255)
                                                                                                                                                                                       ttCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGAt                                                                                    <  2:142348/289‑1 (MQ=255)
                                                                                                                                                                                             cGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTAt                                                                                                                                                              >  2:2232479/1‑209 (MQ=255)
                                                                                                                                                                                                          acacCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGc                                                                 >  2:2188867/1‑289 (MQ=255)
                                                                                                                                                                                                            acCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCgtggt                                                                                                                                         <  2:82943/215‑1 (MQ=255)
                                                                                                                                                                                                              cATTCTGGTCTGTCGGATATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGCGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCaaaa                                                             >  1:1708747/1‑289 (MQ=255)
                                                                                                                                                                                                               aTTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACAGGCCCGTTTATTCTGTTTGCTCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGATTGAACGCAAGAAGAGGAATGCCTGTTGGGTTTACCGACTCTTAGCgaa                                                              >  2:2724822/1‑287 (MQ=255)
                                                                                                                                                                                                                 tCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGgcag                                                                                                                                                                                                           >  2:2639523/1‑144 (MQ=255)
                                                                                                                                                                                                                    ggTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCtt                                                       >  1:1161014/1‑289 (MQ=255)
                                                                                                                                                                                                                          tCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCTACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTTACCGTGGTTGTTTTTATGGCGGAGAAAATATGGCTTGTACGCCAGATGTGGAATTCCTGCTGGGTTTCACGCGTCTTATCAAAATTTCTTTAtttt                                                 >  2:1759988/1‑289 (MQ=255)
                                                                                                                                                                                                                          tCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTgggcgggc                                                                                                                                                                                                             <  2:336107/133‑1 (MQ=255)
                                                                                                                                                                                                                          tCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTgggcgggc                                                                                                                                                                                                             >  1:336107/1‑133 (MQ=255)
                                                                                                                                                                                                                          tCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGt                                                                                                                                                                  <  2:945166/176‑1 (MQ=255)
                                                                                                                                                                                                                          tCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGTTTTCACGCCGCTTGGCAAAATTCCTTTAAttt                                                 >  2:2083380/1‑289 (MQ=255)
                                                                                                                                                                                                                           tgtttttttccTTTTGTCCCTTTCGGTCCAATCTTCTATGCCGCCGGTTTGCCTTCAATACGT‑TTTCGCTCGTTTTGTATCGCCACCTGGATTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAAtttt                                                <  2:2664596/280‑1 (MQ=255)
                                                                                                                                                                                                                           ctgTTATTCCTTTTTGTCCTGTTCGATCCGAACATGTCTGATGCAGGTTTGACTTCAAT‑CGTGTTTCGCTCGTTTGTTAGCGCCACCGTGCTTGGTCAGTTACCGGCAACTAGTGGTTATTCCTGGGCGGGCAGCATTTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGAGTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAAtttt                                                <  2:212038/287‑1 (MQ=255)
                                                                                                                                                                                                                           cGGTTTTTGCCTTTTGTCCCTTTCGATCCAATCCGCTATGCTGCCGGTTTGACTTCCATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAAtttt                                                <  2:920382/289‑1 (MQ=255)
                                                                                                                                                                                                                               tATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATCCGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTCGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGTACGTCAGAAGAGGAATGCCCGATGGGGTTACCGCATGCTAGCCAAACTCCCTTAATTTTaat                                             >  2:783321/1‑286 (MQ=255)
                                                                                                                                                                                                                               tATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGc                                                                                                                                                                                                                                      >  1:475988/1‑103 (MQ=255)
                                                                                                                                                                                                                               tATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGc                                                                                                                                                                                                                                      <  2:475988/103‑1 (MQ=255)
                                                                                                                                                                                                                               tATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTg                                                                                      <  1:326736/247‑1 (MQ=255)
                                                                                                                                                                                                                                 ttGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTTCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTTGTTAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATTTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGGATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTcc                                          <  1:244497/289‑1 (MQ=255)
                                                                                                                                                                                                                                 ttGCCTTTTGTCCCTTTAGATCCAATCGGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTcc                                          <  1:105414/289‑1 (MQ=255)
                                                                                                                                                                                                                                  tGCCTTTTGTCCCTTTCTGTCCAATCAGCTTTGCTTCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCca                                         <  2:1785937/289‑1 (MQ=255)
                                                                                                                                                                                                                                    ccTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGtt                                                                                                                                                        <  1:670127/176‑1 (MQ=255)
                                                                                                                                                                                                                                      ttttGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAgg                                     <  1:1074668/289‑1 (MQ=255)
                                                                                                                                                                                                                                        ttGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGc                                                                                                       <  2:2710153/221‑1 (MQ=255)
                                                                                                                                                                                                                                        ttGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGGTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCg                                   >  1:2195521/1‑289 (MQ=255)
                                                                                                                                                                                                                                            cccTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAgg                                     >  1:99100/1‑283 (MQ=255)
                                                                                                                                                                                                                                               tttCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTgggcgggc                                                                                                                                                                                                             >  1:958539/1‑112 (MQ=255)
                                                                                                                                                                                                                                               tttCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGc                            >  1:1345836/1‑289 (MQ=255)
                                                                                                                                                                                                                                                ttCGATCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCa                           >  1:447747/1‑289 (MQ=255)
                                                                                                                                                                                                                                                     tCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTcc                                          >  1:1019492/1‑269 (MQ=255)
                                                                                                                                                                                                                                                     tCCAATCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCAtcgtc                      >  1:802462/1‑289 (MQ=255)
                                                                                                                                                                                                                                                         aTCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGACAATATGGCTTGAAAGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCCAAATTCCTTTAATTTTACTTCCACAGTCGTGGGTGCAtctcagtc                   >  2:2311676/1‑282 (MQ=255)
                                                                                                                                                                                                                                                         aTCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCGGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCa                  >  1:1735804/1‑289 (MQ=255)
                                                                                                                                                                                                                                                         aTCAGCTATGCTGCCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGGGGTCATTTTTATGGCGAAGAAAATATGGCTTCAACCCCAGAAGCGGAATGGCCGTTGGGTTTACCGCCGCGTTGCAAAATTCCGTTACATTTCCGTCTACAGCCGTGGCTgtctcgactct                   >  2:1107348/1‑278 (MQ=255)
                                                                                                                                                                                                                                                                 tgctgcCGGTTTGGCTTCATTACGT‑TTTCGCTCGTTTTTTATGGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGGATGTTAGCAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCg          <  2:976722/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                 tgctgcCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCg          <  1:2320962/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                 tgctgcCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCg          >  1:1211759/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                 tgctgcCGGTTTGACTTCAATACGT‑TTTCGC‑TCGTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCAGTACGGCGa         >  1:1193948/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                   ctgcCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGc                                                                                                       >  1:1606041/1‑194 (MQ=255)
                                                                                                                                                                                                                                                                    tgcCGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACGATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTATGCCCGAACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATTCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAg        <  1:2302769/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                      ccGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCgtggtg                                                                                                                                        <  1:2524202/158‑1 (MQ=255)
                                                                                                                                                                                                                                                                      ccGGTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAAtttt                                                <  2:2418040/246‑1 (MQ=255)
                                                                                                                                                                                                                                                                        ggTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGTAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGCCCCCATTCCGGCGAGGTGCt   >  2:294586/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                        ggTTTGACTTCAATACGT‑TTTCGCTCGTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCt   >  1:2186764/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                 |||                                                                                                                                                                                                                                                                                       
CTACCTGCGTTTTTGATCACCTTTGCCAATGCGAGCCTGTTTGGCGCGTTCTGGGGCGGCTTGCTGAGCTGGACCAGTAGCATGGCCGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGCAAAACCGTGCTTGACAGTATGGACGGCTTTTTCACTCGCTACGGCAAACACACCATTCTGGTCTGTCGGTTATTGCCTTTTGTCCCTTTCGATCCAATCAGCTATGCTGCCGGTTTGACTAGTATACGT‑TTTCGCAGCTTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGCAACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACAGGCGGTACTTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTGCCCTGACCGTGGTGATTTTTATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGATGGGTTTACCGCCGCTTAGCAAAATTCCTTTAATTTTACGTCCACAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTGCTA  >  CP042583/1517066‑1517619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A