Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F210 I1 R1	4928	340.1	5480506	96.9%	5310610	252.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	1,637,228	3 bp→TGA	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	1,637,228	0	A	T	99.7%	913.8 / NA	380	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (194/185); minor base C (0/1); total (194/186)
Fisher's exact test for biased strand distribution p-value = 4.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,637,229	0	C	G	99.5%	896.2 / NA	380	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (0/0); major base G (193/185); minor base T (1/1); total (194/186)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01
*	CP042583	1,637,230	0	T	A	99.7%	911.3 / NA	380	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base T (0/1); new base A (194/185); total (194/186)
Fisher's exact test for biased strand distribution p-value = 4.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.29e-01

Only 100 of 380 total aligned reads displayed.

CGATCCAGGTGGCATTATCGTCAAAGAATTCGATGGTTTCGGAGCGGATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTACTATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCGCTTGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCG  >  CP042583/1636954‑1637508

|||

     cAGGTGGCATTATCGTCAAAGAATTCGATGGTTTCGGAGCGGATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGcc                                                                                                                                                                                                                                                                       <  1:1681344/289‑1 (MQ=255)

            cATTATCGTCAAAGAATTCGATGGTTTCGGAGCGGATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAAt                                                                                                                                                                                                                                                                 <  1:1301030/288‑1 (MQ=255)

             aTTATCGTCAAAGAATTCGATGGTTTCGGAGCGGATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGTTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACCGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATACGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGactc                                                                                                                                                                                                                                                                >  1:2161888/1‑285 (MQ=255)

             aTTATCGTCAAAGAATTCGATGGTTTCGGAGCGGATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACATAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATa                                                                                                                                                                                                                                                                >  1:1635358/1‑288 (MQ=255)

             aTTATCGTCAAAGAATTCGATGGTTTCGGAGCGGATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAaaaa                                                                                                                                                                                                                                                               >  1:2581893/1‑289 (MQ=255)

             aTTATCGTCAAAGAATTCGATGGTTTCGGAGCGGATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATa                                                                                                                                                                                                                                                                >  1:279327/1‑288 (MQ=255)

             aTTATCGTCAAAGAATTCGATGGTTTCGGAGCGGATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATa                                                                                                                                                                                                                                                                >  2:2290296/1‑288 (MQ=255)

                     cAAAGAATTGGATGGTTTCGGGGCGGATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAAccgcccgc                                                                                                                                                                                                                                                       <  2:1588595/289‑1 (MQ=255)

                     cAAAGAATTCGATGGTTTCGGAGCGGATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAAccgcccgc                                                                                                                                                                                                                                                       <  2:2076995/289‑1 (MQ=255)

                        aGAATTCGATGGTTTCGGAGCGGATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAg                                                                                                                                                                                                                                                    <  1:2454226/289‑1 (MQ=255)

                           aTTCGATGGTTTCGGAGCGGATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGt                                                                                                                                                                                                                                                  >  1:186202/1‑288 (MQ=255)

                                    tttCGGAGCGGATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCACGCCAGGTTCAtatac                                                                                                                                                                                                                                          >  1:1109210/1‑286 (MQ=255)

                                              gATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAg                                                                                                                                                                                                                              >  1:968156/1‑289 (MQ=255)

                                              gATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGA‑CACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAgg                                                                                                                                                                                                                             >  1:784469/1‑289 (MQ=255)

                                                    aTCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTg                                                                                                                                                                                                                         <  1:1259519/288‑1 (MQ=255)

                                                       aaTGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCGTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATGCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCt                                                                                                                                                                                                                     <  2:817241/289‑1 (MQ=255)

                                                        aTGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGttt                                                                                                                                                                                                                          <  1:1392469/283‑1 (MQ=255)

                                                         tGGCAATCACTGGTTTGTCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCttt                                                                                                                                                                                                                   >  1:852192/1‑289 (MQ=255)

                                                         tGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGcc                                                                                                                                                                                                                                                                       >  1:390012/1‑237 (MQ=255)

                                                         tGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGcc                                                                                                                                                                                                                                                                       <  2:390012/237‑1 (MQ=255)

                                                         tGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCata                                                                                                                                                                                                                                             >  1:2001624/1‑263 (MQ=255)

                                                         tGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGt                                                                                                                                                                                                                                 >  1:1916066/1‑275 (MQ=255)

                                                             aaTCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAATTTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAAccg                                                                                                                                                                                                                                                            <  1:416795/245‑1 (MQ=255)

                                                               tCACTGTTTTGCCCGATTTGTTCAGCTGATGGAAGT‑ATTCCAGCCCGTGCTCATCGGTTCTGTTCCAGGAAA‑TTGTTATTGTTTTAAGCGGGTTCATTCCCCACAGAACCACAACCCGGCTGTGTTCCAGAATCAGCGGCCAGGAGGTCTGCTGGTCATACACCTCTACAGAACCTCCCACATGCTGCATGATCACCTGTGCGGCCCCGATTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCaa                                                                                                                                                                                                             <  2:2161888/289‑1 (MQ=255)

                                                                 aCTGTTTTGCCAGATTTTTTCACCTGATGGAAGT‑ATTCCAGCCCTAGCTCATGGGTACTGCTCCAGGCAA‑TTTTGAAGGTATTCAGCGGGTTCATTCCCAACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGTCCAGGAGGTATGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCGCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCaa                                                                                                                                                                                                             <  2:1334818/287‑1 (MQ=255)

                                                                                tttttCCGCTGATTGAAGTAATTCCA‑CCCTTGCCTATCCGTACTTCTACCGGCCA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGcc                                                                                                                                                                                            <  1:2241982/289‑1 (MQ=255)

                                                                                        cTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTaa                                                                                                                                                                                    >  1:1805041/1‑289 (MQ=255)

                                                                                                      tCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCaaaaa                                                                                                                                                                       >  1:2344512/1‑289 (MQ=255)

                                                                                                              ttGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTTATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGgccgat                                                                                                                                                               <  1:443931/289‑5 (MQ=255)

                                                                                                              ttGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAGTAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGgccgat                                                                                                                                                               <  2:1629849/289‑5 (MQ=255)

                                                                                                               tGCTCATCGGTCCTGCTTCAGGAAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGATTCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCGACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACAAGCCAGAAGGGCGCCAGCCGTAAGATCCGGCAAAAATGgccgatg                                                                                                                                                              <  2:2513061/289‑6 (MQ=255)

                                                                                                               tGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAaca                                                                                                                                                                                                           >  1:487551/1‑244 (MQ=255)

                                                                                                               tGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGgccgatg                                                                                                                                                              >  2:1375028/1‑284 (MQ=255)

                                                                                                                gCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAgcgc                                                                                                                                                                                             >  1:2117258/1‑257 (MQ=255)

                                                                                                                gCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAgcgc                                                                                                                                                                                             <  2:2117258/257‑1 (MQ=255)

                                                                                                                         gaCTGCTCCCGTTAA‑TTTTTATGTTAGTCAGCGGTTTCATCCCCCACGGCACCACATCCAGGATGTATTCCAGAAGCGGCGGCAGGGAGGTCTGCTGTTCATTCACCGCGACTGGACCGACCACATGCGGCATGATCACCGGTGCTGCCCGGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATACCGTTGCAGTAAGGTTTGCGCTTTATGGAACACGCCAGAAGAGCGCCGGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAg                                                                                                                                                     <  2:1847087/287‑1 (MQ=255)

                                                                                                                              cTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCt                                                                                                                                                                                                                                                                            >  2:60596/1‑164 (MQ=255)

                                                                                                                              cTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGt                                                                                                                                                                                                                                 >  2:476224/1‑207 (MQ=255)

                                                                                                                                ccAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAAccgcccgc                                                                                                                                                                                                                                                       <  2:1024092/183‑1 (MQ=255)

                                                                                                                                ccAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAAccgcccgc                                                                                                                                                                                                                                                       >  1:1024092/1‑183 (MQ=255)

                                                                                                                                 cAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGaa                                                                                                                                            <  2:2704409/289‑1 (MQ=255)

                                                                                                                                 cAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGaa                                                                                                                                            <  2:2344512/289‑1 (MQ=255)

                                                                                                                                   ggCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGACTACCCGCCCGCCAGGTTCATATAACGTTCCAGTAAGGTTTGCGCTTTATGCAACACGCCATAAGAGCGCCAGCCGTAAGATCCGGCAAAACCGGCCGCTGATCCGTTAGCCTTACGAAt                                                                                                                                           >  2:875415/1‑288 (MQ=255)

                                                                                                                                   ggCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACg                                                                                                                                                                                                                                        <  1:1171891/195‑1 (MQ=255)

                                                                                                                                   ggCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTa                                                                                                                                                                                                                  >  2:1756663/1‑217 (MQ=255)

                                                                                                                                   ggCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTa                                                                                                                                                                                                                  <  1:1756663/217‑1 (MQ=255)

                                                                                                                                   ggCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACCCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTAAGCTTTACGAATa                                                                                                                                          >  2:698099/1‑289 (MQ=255)

                                                                                                                                                   aTTCAGCGGGTTCATTCCCCCCAGACCCACAGCCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCa                                                                                                                           <  2:1141621/289‑1 (MQ=255)

                                                                                                                                                   aTTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAAccgcccgc                                                                                                                                                                                                                                                       <  2:2240648/165‑1 (MQ=255)

                                                                                                                                                          gggTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAAt                                                                                                                      <  1:2290296/287‑1 (MQ=255)

                                                                                                                                                            gTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAAccgcccgc                                                                                                                                                                                                                                                       >  2:1287754/1‑156 (MQ=255)

                                                                                                                                                            gTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGt                                                                                                                  >  2:678697/1‑289 (MQ=255)

                                                                                                                                                            gTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGCTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGt                                                                                                                  >  2:330673/1‑289 (MQ=255)

                                                                                                                                                              tCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGttt                                                                                                                >  1:61619/1‑289 (MQ=255)

                                                                                                                                                                       acaGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCaa                                                                                                                                                                                                             >  2:1535021/1‑187 (MQ=255)

                                                                                                                                                                         cgCACCCCAACCTGGCCTTTTTCCCGAATCGGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGtt                                                                                                     <  2:301158/288‑1 (MQ=255)

                                                                                                                                                                           caccacAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAgcgc                                                                                                                                                                                             >  2:568626/1‑199 (MQ=255)

                                                                                                                                                                           caccacAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGc                                                                                                                              >  1:991204/1‑262 (MQ=255)

                                                                                                                                                                           caccacAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTc                                                                                                    >  1:819118/1‑288 (MQ=255)

                                                                                                                                                                              cacaACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCa                                                                                                 >  1:1702203/1‑288 (MQ=255)

                                                                                                                                                                                caACCTGGCTGTTTTCCAGAATCAGCGGCCAGGCGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCt                                                                                              <  1:20536/289‑1 (MQ=255)

                                                                                                                                                                                caACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGc                                                                                               >  1:2423387/1‑288 (MQ=255)

                                                                                                                                                                                   ccgggCTGGTTTCCAGAATCGGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCAc                                                                                           <  2:2626730/286‑1 (MQ=255)

                                                                                                                                                                                   ccTGGCTGTTTTCCAGAATCCGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCAc                                                                                           <  1:2632507/289‑1 (MQ=255)

                                                                                                                                                                                   ccTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAaca                                                                                                                                                                                                           <  1:1001384/177‑1 (MQ=255)

                                                                                                                                                                                   ccTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCAc                                                                                           <  1:1514215/289‑1 (MQ=255)

                                                                                                                                                                                       gCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCt                                                                                              <  1:2687937/282‑1 (MQ=255)

                                                                                                                                                                                                  aaaTCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTATc                                                                            <  1:1598513/288‑1 (MQ=255)

                                                                                                                                                                                                                 aggTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTATCTTCGCCACGACCtt                                                              <  1:557721/288‑1 (MQ=255)

                                                                                                                                                                                                                           ttCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGttt                                                                                                                                                                                                                          >  2:1048366/1‑122 (MQ=255)

                                                                                                                                                                                                                           ttCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGttt                                                                                                                                                                                                                          <  1:1048366/122‑1 (MQ=255)

                                                                                                                                                                                                                             cATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTg                                                                                        >  2:1506931/1‑250 (MQ=255)

                                                                                                                                                                                                                                     tctACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCt                                                                                              >  2:976665/1‑236 (MQ=255)

                                                                                                                                                                                                                                     tctACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACa                                                                                    >  1:2543531/1‑246 (MQ=255)

                                                                                                                                                                                                                                      ctACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCGCATGAATCAGTTTTAATGCCTGTTCCTAGCTCACCTGTACCTAGGTATCTTCGCCACGCCCTTTCGCCGGTTGCCGGGGTTTATc                                        >  2:1249781/1‑289 (MQ=255)

                                                                                                                                                                                                                                       tACAGAACCGACCACATGCGGCATGATCACCTTTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGAAACACGCCAGAAGAGCGCCAGCCGTAAGATTCGGCAAAAATGGACGATGGTTCGTTAGCTTAACGAATACGATCAGGTTGCTCATGAATCAGGTCTAATGCCTTTTTCCAGCTCCCCTTTACATAGGTATCTTCACCACGACCTTTCGCCGGTTGAGGTGGATTGTCg                                       >  2:1912341/1‑289 (MQ=255)

                                                                                                                                                                                                                                       tACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCg                                       >  1:150266/1‑289 (MQ=255)

                                                                                                                                                                                                                                       tACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTACCCTGTACCTAGGTACCCTCCCCACCCCCTTTCACCGTTTCCAGTggtctaa                                         >  2:1413433/1‑282 (MQ=255)

                                                                                                                                                                                                                                       tACAGAACCGACCACATGCGGCATGATCACCTGGGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCt                                                                                              <  2:2647495/234‑1 (MQ=255)

                                                                                                                                                                                                                                            aaCCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCt                                                                                              <  1:587343/229‑1 (MQ=255)

                                                                                                                                                                                                                                                 aCCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATTAGGTTTAATGCCTGTTCCCAGCTCACCTTGACATAGGTATCTTCGCCCTGACCTTTCGCCGGTTGCAGTGGATTATCTAGCTAGtttt                             >  2:1466501/1‑289 (MQ=255)

                                                                                                                                                                                                                                                 aCCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATTCCTGTTCCCAGCTCACCTGTACATAGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCttt                             >  2:2571878/1‑289 (MQ=255)

                                                                                                                                                                                                                                                 aCCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTATc                                                                            <  1:33540/242‑1 (MQ=255)

                                                                                                                                                                                                                                                 aCCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGAt                                            >  1:141396/1‑274 (MQ=255)

                                                                                                                                                                                                                                                 aCCACATGCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATAGAGATAGCttt                             >  1:264254/1‑289 (MQ=255)

                                                                                                                                                                                                                                                        gCGGCATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTACCTTCGCCCCCACCTTTCGCCGGTTGCAGTGGATTTTCGAAGTTGCTTTTGCTCa                       >  2:435301/1‑288 (MQ=255)

                                                                                                                                                                                                                                                            cATGATCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTATCTTCGCCACGACCTTTCGCCgg                                                       >  1:717490/1‑252 (MQ=255)

                                                                                                                                                                                                                                                                aTCACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCAc                                                                                           >  2:1814051/1‑212 (MQ=255)

                                                                                                                                                                                                                                                                  tcagcgtgCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCGGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGGCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTATCTTCGCCACGACCTTTCGCCGGTTGAAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGc            <  1:753304/284‑1 (MQ=255)

                                                                                                                                                                                                                                                                  cACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATg             <  2:784469/288‑1 (MQ=255)

                                                                                                                                                                                                                                                                  cACCTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGc            <  1:2391011/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                    ccTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCttt                                                                                                                                                 >  2:2429148/1‑154 (MQ=255)

                                                                                                                                                                                                                                                                    ccTGTGCTGCCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCAc                                                                                           >  1:1217023/1‑208 (MQ=255)

                                                                                                                                                                                                                                                                        tgctgcCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATCCGATCATGTTGCCCATGAATCAGTTTTAATGCCTGTTCCCAGCCCACCTGTACATAGGTAACTTCGCCACGACCTTTCGCCGGTTCCAGTGGATTTGCGGGCAAGCTTTTTCTCACCATCGGATTCTGCAt       >  2:1208941/1‑288 (MQ=255)

                                                                                                                                                                                                                                                                          ctgcCCCGGTTGAATAATCGCCGCTATGCCCGGGATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTATCTTCGCCACGACCTTTCGc                                                          <  1:182806/235‑1 (MQ=255)

                                                                                                                                                                                                                                                                           tgcCCCGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACa                                                                                    <  2:1687208/208‑1 (MQ=255)

                                                                                                                                                                                                                                                                             ccccGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGgccgatg                                                                                                                                                              <  2:1824399/132‑6 (MQ=255)

                                                                                                                                                                                                                                                                             ccccGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGaa                                                                                                                                            >  1:313722/1‑150 (MQ=255)

                                                                                                                                                                                                                                                                             ccccGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAAt                                                                                                                      <  2:239474/172‑1 (MQ=255)

                                                                                                                                                                                                                                                                             ccccGGTTGAATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCCGATGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATAcgcg  >  1:1465477/1‑288 (MQ=255)

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CGATCCAGGTGGCATTATCGTCAAAGAATTCGATGGTTTCGGAGCGGATAGGATCAATGGCAATCACTGGTTTGCCAGATTTTTTCAGCTGATGGAAGT‑ATTCCAGCCCTTGCTCATCGGTACTGCTCCAGGCAA‑TTTTTAAGGTATTCAGCGGGTTCATTCCCCACAGCACCACAACCTGGCTGTTTTCCAGAATCAGCGGCCAGGAGGTCTGCTGTTCATACACCTCTACAGAACCGACCACATGCGGCATGATCACCTGTGCTGCCCCGGTACTATAATCGCCGCTATGCCCGGAATAACCGCCCGCCAGGTTCATATAACGTTGCAGTAAGGTTTGCGCTTTATGCAACACGCCAGAAGAGCGCCAGCCGTAAGATCCGGCAAAAATGGCGCTTGGTCCGTTAGCTTTACGAATACGATCATGTTGCTCATGAATCAGTTTTAATGCCTGTTCCCAGCTCACCTGTACATAGGTATCTTCGCCACGACCTTTCGCCGGTTGCAGTGGATTATCGAGATAGCTTTTTCTCACCATCGGATGCTGAATACGCG  >  CP042583/1636954‑1637508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A