Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,644,439 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,644,4390GC99.7% 775.2 / NA 328intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base C (152/175);  total (153/175)
Fisher's exact test for biased strand distribution p-value = 4.66e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01
*CP0425831,644,4400CG99.7% 777.1 / NA 328intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (152/175);  total (153/175)
Fisher's exact test for biased strand distribution p-value = 4.66e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01
*CP0425831,644,4410TA99.7% 782.6 / NA 328intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base A (152/175);  total (153/175)
Fisher's exact test for biased strand distribution p-value = 4.66e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 328 total aligned reads displayed.

GATTAACCGCTCTTACGCAAGCTTTGGAAAGGTAGCAACTTTATCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGGCTCATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCGCTCGTTAACTCGTTTGCCGCTCCCGCAAATTGGCTAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGATAGGCTTGCACATCACCACGGCTCGTTGGTGCAATCTGGG  >  CP042583/1644160‑1644716
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                    
gaTTAACCGCTCCTACGCAAGCTTTGGAAAGGTAGCAACTTTATCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCCCCCGCAAATTGCGAaa‑gaaca                                                                                                                                                                                                                                                                              >  1:2439734/1‑289 (MQ=255)
 aTTAACCGCTCCTACGCAAGCTTTGGAAAGGTAGCAACTTTATCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAaa‑gaacaa                                                                                                                                                                                                                                                                             >  2:1314529/1‑289 (MQ=255)
 aTTAACCGCTCCTACGCAAGCTTTGGAAAGGTAGCAACTTTATCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAaa‑gaacaa                                                                                                                                                                                                                                                                             >  1:721948/1‑289 (MQ=255)
                  aaGCTTTGGAAAGGTAGCAACTTTATCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCt                                                                                                                                                                                                                                                            <  1:1166848/289‑1 (MQ=255)
                    gCTTTGGAAAGGTAGCAACTTTATCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGCCGTTAACTCGTTTGCCGCTCCCGCAACTT‑GCTAACGAACACAACCGCCCGGATTgcccgc                                                                                                                                                                                                                                                          >  2:2592553/1‑284 (MQ=255)
                       ttGGAAAGGTAGCAACTTTTTCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTTTCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTc                                                                                                                                                                                                                                                       <  2:2702846/289‑1 (MQ=255)
                            aaGGTAGCAACTTTATCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGag                                                                                                                                                                                                                                                  <  1:442703/289‑1 (MQ=255)
                            aaGGTAGCAACTTTATCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGag                                                                                                                                                                                                                                                  <  1:2624068/289‑1 (MQ=255)
                            aaGGTAGCAACTGTAGCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGag                                                                                                                                                                                                                                                  <  2:399435/289‑1 (MQ=255)
                                tAGCAACTTTATCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGagcag                                                                                                                                                                                                                                               <  2:441720/288‑1 (MQ=255)
                                    aaCTTTATCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACa                                                                                                                                                                                                                                          <  1:2684752/289‑1 (MQ=255)
                                      cTTTATCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATa                                                                                                                                                                                                                                        <  1:2139541/289‑1 (MQ=255)
                                         tATCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGagca                                                                                                                                                                                                                                                <  1:388675/278‑1 (MQ=255)
                                           tCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCtt                                                                                                                                                                                                                                   <  1:2077733/289‑1 (MQ=255)
                                                       cTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAgg                                                                                                                                                                                                                        <  1:1554790/288‑1 (MQ=255)
                                                           ccGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCt                                                                                                                                                                                                                                                            <  1:2725611/248‑1 (MQ=255)
                                                           ccGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCt                                                                                                                                                                                                                                                            >  2:2725611/1‑248 (MQ=255)
                                                           atgtcgctggcgGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCa                                                                                                                                                                                                                    >  1:1849019/10‑288 (MQ=255)
                                                               gcTTCGCTGACCTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCg                                                                                                                                                                                                               <  1:2176855/289‑1 (MQ=255)
                                                                              cTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTc                                                                                                                                                                                                >  2:761415/1‑289 (MQ=255)
                                                                                  tttAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTc                                                                                                                                                                                                             >  2:1731790/1‑272 (MQ=255)
                                                                                    tAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGACGCTCCCGCAAATTGCGAAA‑GAAAAAGAACGCCCGGATTGGGTGGTTCCTGGGCAGCAACAAACTACTTTCCTACCAGTTTCATACCTTCACCCATGGGCCTCACTaa                                                                                                                                                                                           >  2:1604001/1‑288 (MQ=255)
                                                                                       gTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGccc                                                                                                                                                                                       >  1:1410200/1‑289 (MQ=255)
                                                                                           cTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTGCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGag                                                                                                                                                                                                                                                  >  2:684140/1‑226 (MQ=255)
                                                                                           cTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACg                                                                                                                                                                                    >  1:565954/1‑288 (MQ=255)
                                                                                                   gCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACa                                                                                                                                                                                                                                          >  1:1996419/1‑226 (MQ=255)
                                                                                                   gCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACa                                                                                                                                                                                                                                          <  2:1996419/226‑1 (MQ=255)
                                                                                                     ccTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATCCGGTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAg                                                                                                                                                                           <  2:185048/286‑1 (MQ=255)
                                                                                                                tGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGcc                                                                                                                                                                                        <  1:1020431/263‑1 (MQ=255)
                                                                                                                 ggTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGc                                                                                                                                                                                                   >  1:862234/1‑251 (MQ=255)
                                                                                                                   ttAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGagc                                                                                                                                                                                                                                                 >  1:879538/1‑203 (MQ=255)
                                                                                                                   ttAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGcc                                                                                                                                                                                        <  1:1345630/260‑1 (MQ=255)
                                                                                                                   ttAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTtcatca                                                                                                                                                           >  1:2297656/1‑289 (MQ=255)
                                                                                                                     aaTATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTg                                                                                                                                                                                                                                                    >  2:353508/1‑198 (MQ=255)
                                                                                                                     aaTATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTCGCGGAATATTTTCATCAGt                                                                                                                                                         >  1:1927810/1‑289 (MQ=255)
                                                                                                                        atCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAAt                                                                                                                                                      >  1:1379226/1‑289 (MQ=255)
                                                                                                                            tttttCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGag                                                                                                                                                                                                                                                  <  2:1206733/193‑1 (MQ=255)
                                                                                                                            tttttCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGag                                                                                                                                                                                                                                                  >  1:1206733/1‑193 (MQ=255)
                                                                                                                            tttttCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGcc                                                                                                                                                                                        >  2:864086/1‑251 (MQ=255)
                                                                                                                            tttttAACGTTAACCTCCAGCTTTTCTGCATGACGGAAAGTACGTTCCGCCAGCGACATAGTCAATGCACGATGCAGCGCAGCTTCAACTTCGTCACGATCCTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GCACAAGACCGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTAc                                                                                                                                                  <  2:457209/289‑1 (MQ=255)
                                                                                                                             ttttCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTAc                                                                                                                                                  <  1:683578/288‑1 (MQ=255)
                                                                                                                                 cACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTAc                                                                                                                                                                                                                            <  2:1921644/210‑1 (MQ=255)
                                                                                                                                                 ctttCTGCATGACGCGAAATACGTTCCGCCAGCGACAGAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCa                                                                                                                                <  2:1127984/285‑1 (MQ=255)
                                                                                                                                                     cTGCATGTCGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAataata                                                                                                                         >  1:190190/1‑289 (MQ=255)
                                                                                                                                                     cTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAataata                                                                                                                         >  1:188520/1‑289 (MQ=255)
                                                                                                                                                     cTGCATGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAataata                                                                                                                         >  2:2074020/1‑289 (MQ=255)
                                                                                                                                                          tGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAgcg                                                                                                                    <  1:1592280/289‑1 (MQ=255)
                                                                                                                                                          tGACGGGAAATACGTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAgcg                                                                                                                    >  1:771175/1‑289 (MQ=255)
                                                                                                                                                                       gTTCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAg                                                                                                                      >  2:66083/1‑274 (MQ=255)
                                                                                                                                                                        ttCCGCCAGCGACATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCAACGTCAGAGGCGCGGTATATTTTCATCAGTAATTTACGGTCAAATTGCTGATTCAAATATTAAAGCGGTGTCAAGCCCAAt                                                                                                      >  2:1813186/1‑289 (MQ=255)
                                                                                                                                                                                             tGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAAtt                                                                                 >  2:1255072/1‑289 (MQ=255)
                                                                                                                                                                                                 cGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGGTCATCCCGTCACTGAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCGTCAGTAATTTACGGTCAAAATGCGGATGCAAATAATAAAGCAGGGTCCAGCCTAAGGGCCGGTATTTACCAttgaggagtg                                                                             <  1:952946/289‑9 (MQ=255)
                                                                                                                                                                                                   aTCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCa                                                                                       >  2:1962391/1‑277 (MQ=255)
                                                                                                                                                                                                   aTCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCa                                                                           >  2:2183575/1‑289 (MQ=255)
                                                                                                                                                                                                       aGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCt                                                                        >  1:2337050/1‑288 (MQ=255)
                                                                                                                                                                                                         cgcAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCa                                                                     >  2:737367/1‑289 (MQ=255)
                                                                                                                                                                                                              cTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTAc                                                                                                                                                                                                                            <  2:2355244/133‑1 (MQ=255)
                                                                                                                                                                                                              cTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCg                                                                                                                                                                                                  <  2:1089262/159‑1 (MQ=255)
                                                                                                                                                                                                              cTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTcc                                                                                                              >  2:1167760/1‑243 (MQ=255)
                                                                                                                                                                                                              cTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCAttt                                                                  >  2:893202/1‑287 (MQ=255)
                                                                                                                                                                                                              cTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCAttt                                                                  >  2:1055627/1‑287 (MQ=255)
                                                                                                                                                                                                              cTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTc                                                                >  1:807049/1‑289 (MQ=255)
                                                                                                                                                                                                              cTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTc                                                                >  1:64026/1‑289 (MQ=255)
                                                                                                                                                                                                              cTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGATGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCAtttt                                                                 >  1:1063046/1‑288 (MQ=255)
                                                                                                                                                                                                              cTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATAGTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTc                                                                >  1:2701934/1‑289 (MQ=255)
                                                                                                                                                                                                                gCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGa                                                              >  2:529573/1‑289 (MQ=255)
                                                                                                                                                                                                                  aacagcggcACGAACGTAAGGGGTAACAATTAAGGCGGCCGTTAACACGATTGCCGCTCCCGCAAATTGCGAAA‑GACCAAGAACGCACGGATTGGCTGGGGCCTGAGCAGCAACATACTCTTTTGCTAACAGGTTCATACCGTAACGCAGTGGCGTCACTAAGCCCACGTCAGAAGAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAg                                                             <  2:2161608/280‑1 (MQ=255)
                                                                                                                                                                                                                  aaCTTCGTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAg                                                             <  1:987102/288‑1 (MQ=255)
                                                                                                                                                                                                                        gTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTtcat                                                                                                                                                             >  1:256416/1‑186 (MQ=255)
                                                                                                                                                                                                                        gTCACGATCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTtcat                                                                                                                                                             <  2:256416/186‑1 (MQ=255)
                                                                                                                                                                                                                              aTCGTAGGGGTAAACAATTACCGCCGACGTTAACTCGTTGGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCGTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAat                                                 <  2:1410200/288‑1 (MQ=255)
                                                                                                                                                                                                                               tCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATCATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAg                                                             <  1:821401/275‑1 (MQ=255)
                                                                                                                                                                                                                               tCGTAGGGGTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAata                                                <  2:2498837/288‑1 (MQ=255)
                                                                                                                                                                                                                                      ggTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGa                                          <  1:475781/287‑1 (MQ=255)
                                                                                                                                                                                                                                      ggTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGa                                          <  1:288751/287‑1 (MQ=255)
                                                                                                                                                                                                                                       gTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGcc                                                                                                                                                                                        >  2:144428/1‑144 (MQ=255)
                                                                                                                                                                                                                                       gTTAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGcc                                                                                                                                                                                        <  1:144428/144‑1 (MQ=255)
                                                                                                                                                                                                                                        ttAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTAttt                                                                                           >  2:314589/1‑236 (MQ=255)
                                                                                                                                                                                                                                         tAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCttt                                                                                                                                                                                                                                  <  1:1293343/100‑1 (MQ=255)
                                                                                                                                                                                                                                         tAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTtcat                                                                                                                                                             <  1:2059404/169‑1 (MQ=255)
                                                                                                                                                                                                                                         tAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTg                                                                                                                                     >  2:2451021/1‑193 (MQ=255)
                                                                                                                                                                                                                                         tAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGATAg                                       >  1:2476466/1‑287 (MQ=255)
                                                                                                                                                                                                                                         tAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGATAGGc                                     <  1:2183575/289‑1 (MQ=255)
                                                                                                                                                                                                                                         tAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGATAGGc                                     <  1:1123666/289‑1 (MQ=255)
                                                                                                                                                                                                                                         tAACAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGATAGGc                                     <  2:64026/289‑1 (MQ=255)
                                                                                                                                                                                                                                         tAACAATTAACGCCGAAGTTAACTCGTTTGCCGCTCCCGCAAATCGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGATAg                                       >  1:1198405/1‑287 (MQ=255)
                                                                                                                                                                                                                                          aaCAATTAACGCCGACGTTAACTTGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCtgatga                                                      >  1:2586035/1‑271 (MQ=255)
                                                                                                                                                                                                                                          aaCAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAGCATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTAtt                                                                                            >  1:742403/1‑233 (MQ=255)
                                                                                                                                                                                                                                          aaCAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAgcggcg                                                                                                                 <  2:2390446/212‑1 (MQ=255)
                                                                                                                                                                                                                                          aaCAATTAACGCCGACGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAgcggcg                                                                                                                 >  1:2390446/1‑212 (MQ=255)
                                                                                                                                                                                                                                                 aacgccgacGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGATAGGCTTGCACAt                             <  1:317330/281‑1 (MQ=255)
                                                                                                                                                                                                                                                       gacGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTAtt                                                                                            <  1:1092915/218‑1 (MQ=255)
                                                                                                                                                                                                                                                       gacGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGa                                                   <  2:2736478/259‑1 (MQ=255)
                                                                                                                                                                                                                                                        acGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGATAGGc                                     <  2:2144145/273‑1 (MQ=255)
                                                                                                                                                                                                                                                         cGTTAACTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACGTACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGATAGGCTTGCACATCACCACg                      <  2:157496/288‑1 (MQ=255)
                                                                                                                                                                                                                                                              aCTCGTTTTCCGATCCCGCAAATTGCGAAA‑GAACCAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGATAGGCTTGCACATCACCACgcgacgt                <  2:847045/289‑7 (MQ=255)
                                                                                                                                                                                                                                                              aCTCGTTTGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGa                                                   <  1:665354/254‑1 (MQ=255)
                                                                                                                                                                                                                                                                  ggttGCGGATCCCGCAAATTGCGAAA‑GACAACGAACGCCCGGCTTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGATAGGCTTGCACATCACCACGCGACGTTGGt            <  2:807049/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                   tttGCCGCTCCCGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGATAGGCTTGCACATCACCACGCGACGTTGGt            >  1:1665227/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                              cGCAAATTGCGAAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGATAGGCTTGCACATCACCACGCGACGTTGGTGCAATCTggg  >  2:2625098/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                    
GATTAACCGCTCTTACGCAAGCTTTGGAAAGGTAGCAACTTTATCGCGCTGCTGGCTTTCCGCGCTTCGCGGAACTATCTGCTTTAGGTCGCTAATGAAGCACTCCTGCCAGTGGTTAATATCGTTTTTCACGATAACGTCCAGCATTTCTGCATGACGGGAAATACGTTCCGCCAGGCTCATAGTCAATGCACGATCCAGCGCAGCTGCAACTTCGTCACGATCGTAGGGGTTAACAATTAACGCGCTCGTTAACTCGTTTGCCGCTCCCGCAAATTGGCTAA‑GAACAAGAACGCCCGGATTGGCTGGGTCCTGAGCAGCAACATACTCTTTTGCTACCAGGTTCATCCCGTCACGCAGTGGCGTCACTAAGCCCACGTCAGAGTAGCGGAATATTTTCATCAGTAATTTACGGTCAAAATGCTGATTCAAATAATAAAGCGGCGTCCAGCCTAATTGCCCGTATTTACCATTAATTCGTCCAGCTTCATTTTCGAGCTGATGACGAATATCCTGATAGGCTTGCACATCACCACGGCTCGTTGGTGCAATCTGGG  >  CP042583/1644160‑1644716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A