Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F1 I1 R1
|
770 |
51.4 |
2439994 |
93.8% |
2288714 |
110.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,789,913 |
C→T |
A57T (GCA→ACA) |
waaH ← |
LPS(HepIII)‑glucuronic acid glycosyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,789,913 | 0 | C | T | 100.0%
| 125.4
/ NA
| 39 | A57T (GCA→ACA) | waaH | LPS(HepIII)‑glucuronic acid glycosyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (20/19); total (20/19) |
ACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGCGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCAGAGCAGTCCAGGTTTGCGTAATTAAAGATTCCATACAAGTGCGGAAATCATCGCCCGCATTATATAACGG > NC_000913/3789789‑3790045
|
aCTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTa > 1:1111719/1‑139 (MQ=255)
cATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTc > 1:400395/1‑139 (MQ=255)
tCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTAt < 2:665231/139‑1 (MQ=255)
aGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGaa < 2:400395/139‑1 (MQ=255)
cATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCACCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATc > 1:848409/1‑139 (MQ=255)
atatTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGAGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCg > 1:738893/1‑139 (MQ=255)
tatTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCACCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGt < 2:848409/139‑1 (MQ=255)
ttGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTtaa > 2:612365/1‑139 (MQ=255)
tGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTtaat < 1:612365/139‑1 (MQ=255)
gTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTa > 2:590566/1‑89 (MQ=255)
gTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTa < 1:590566/89‑1 (MQ=255)
ttCAATCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTcc > 2:321031/1‑139 (MQ=255)
aTCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTa > 1:1145808/1‑102 (MQ=255)
aTCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTa < 2:1145808/102‑1 (MQ=255)
aTCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCagag < 2:954027/139‑1 (MQ=255)
aTCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCagag < 2:684527/139‑1 (MQ=255)
aTCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCagaa < 2:738893/139‑2 (MQ=255)
cGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACttt < 1:353134/78‑1 (MQ=255)
cGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACttt > 2:353134/1‑78 (MQ=255)
cGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCAGAGCAGTcc > 2:928283/1‑139 (MQ=255)
cgcgCCACCGATGCGTCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGaa < 1:541931/99‑1 (MQ=255)
cgcgCCACCGATGCGTCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGaa > 2:541931/1‑99 (MQ=255)
gcgcCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCAGAGCAGTCCAGGTTTg < 1:928283/139‑1 (MQ=255)
cgcCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCagag < 1:613189/125‑1 (MQ=255)
cgcCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCagag > 2:613189/1‑125 (MQ=255)
cACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCAGAGCAGTCCAGGTTTGCGTa > 2:737579/1‑139 (MQ=255)
ccGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATg > 1:1070714/1‑110 (MQ=255)
ccGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATg < 2:1070714/110‑1 (MQ=255)
aTGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAAtt < 2:115255/79‑1 (MQ=255)
aTGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAAtt > 1:115255/1‑79 (MQ=255)
ccAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCCATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCAGAGCAGTCCAGGTTTGCGTAATTAAAGAtt < 1:737579/139‑1 (MQ=255)
aTTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCAGAGCAGTCCAGGTTTGCGTAATTAAAGATTCCATa > 2:383064/1‑139 (MQ=255)
gCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCAGAGCAGTCCAGGTTTGCGTAATTAAAGATTCCATACAAg > 1:10721/1‑139 (MQ=255)
aTGCAACAAACGAACGTGCGGATAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCAGAGCAGTCCAGGTTTGCGTAATTAAAGATTCCATACAAGTGCgg > 1:1098526/1‑139 (MQ=255)
aTAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCAGAGCAGTCCAGGTTTGCGTAATTAAAGATTCCATACAAGTGCGGAAATCATCGCCCGCATtatat > 2:909434/1‑139 (MQ=255)
tAGTTTTCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCAGAGCAGTCCAGGTTTGCGTAATTAAAGATTCCATACAAGTGCGGAAATCATCGCCCGCATtatata < 2:10721/139‑1 (MQ=255)
tttCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCAGAGCAGTCCAGGTTTGCGTAATTAAAGATTCCATACAAGTGCGGAAATCATCGCCCGCATTATATAACgg < 2:1111719/139‑1 (MQ=255)
ttCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCagag < 2:1001467/71‑1 (MQ=255)
ttCTGTGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCagag > 1:1001467/1‑71 (MQ=255)
|
ACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCGCCAGCATTCGCCTGATGCAACAAACGAACGTGCGGATAGTTTTCTGCGTAATACTTTGCTATTTCAACAGAATTATCCGTTGAACCATCGTTAATAATAATGATTTCCAGAGCAGTCCAGGTTTGCGTAATTAAAGATTCCATACAAGTGCGGAAATCATCGCCCGCATTATATAACGG > NC_000913/3789789‑3790045
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
