Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F1 I1 R1	776	60.0	3074904	90.1%	2770488	104.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,695,997	C→T	63 (TAG→TAA)	yhjR ←	DUF2629 family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,695,997	0	C	T	98.7%	233.7 / ‑4.3	74	63 (TAG→TAA)	yhjR	DUF2629 family protein
Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (38/35); total (38/36)
Fisher's exact test for biased strand distribution p-value = 4.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.02e-01

CATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCC‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGAAAATGCCTGCTTTAACGCCACAATATCATTCTGG  >  NC_000913/3695874‑3696132

caTCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCa                                                                                                                          >  2:1351799/1‑139 (MQ=255)

                   ttCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTTACTTTTGTTGCGCAAACTCTGCCAGCAACGGc                                                                                                        <  1:1307280/139‑1 (MQ=255)

                                       aCCAGGCTAATGCGGCGGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGcc                                                                                   >  1:846260/1‑139 (MQ=255)

                                       aCCAGGCTAATGCGGCGGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGcc                                                                                   >  2:1347220/1‑139 (MQ=255)

                                       aCCAGGCTAATGCGGCGGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGcc                                                                                   >  1:1405061/1‑139 (MQ=255)

                                               aaTGCGGCGGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTgcg                                                                                                                            <  1:1040035/90‑1 (MQ=255)

                                               aaTGCGGCGGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTgcg                                                                                                                            >  2:1040035/1‑90 (MQ=255)

                                                 tGCGGCGGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTcgc                                                                         >  1:409153/1‑139 (MQ=255)

                                                 tGCGGCGGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTcgc                                                                         >  2:206327/1‑139 (MQ=255)

                                                 tGCGGCGGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTcg                                                                          >  1:174740/1‑138 (MQ=255)

                                                 tGCGGCGGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTcg                                                                          <  2:174740/138‑1 (MQ=255)

                                                  gcggcgGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTcgcg                                                                        <  2:846260/139‑1 (MQ=255)

                                                  gcggcgGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTcgcg                                                                        <  2:409153/139‑1 (MQ=255)

                                                   cggcggTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGt                                                                       <  2:1405061/139‑1 (MQ=255)

                                                     gcggTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGc                                                                                                        <  1:972788/104‑1 (MQ=255)

                                                     gcggTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGc                                                                                                        >  2:972788/1‑104 (MQ=255)

                                                      cggTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAAc                                                                                                           >  1:156789/1‑100 (MQ=255)

                                                      cggTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAAc                                                                                                           <  2:156789/100‑1 (MQ=255)

                                                      cggTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTgg                                                                    >  2:104671/1‑139 (MQ=255)

                                                            tGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAata                                                              >  1:902008/1‑139 (MQ=255)

                                                             ggTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAatat                                                             <  1:1347220/139‑1 (MQ=255)

                                                             ggTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAatat                                                             <  2:381245/139‑1 (MQ=255)

                                                                 gttgtCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGc                                                         <  1:683933/139‑1 (MQ=255)

                                                                  ttgtCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCa                                                        <  2:10805/139‑1 (MQ=255)

                                                                    gtCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATa                                                      >  1:108898/1‑139 (MQ=255)

                                                                     tCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATaa                                                     >  1:1513120/1‑139 (MQ=255)

                                                                      ccccACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAAt                                                    <  2:473357/139‑1 (MQ=255)

                                                                      ccccACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCATTGGGAAATATCGGCATAAt                                                    <  2:902008/139‑1 (MQ=255)

                                                                         cACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCaa                                                                                                            >  1:220133/1‑80 (MQ=255)

                                                                         cACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCaa                                                                                                            <  2:220133/80‑1 (MQ=255)

                                                                         cACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCaa                                                 >  1:1075809/1‑139 (MQ=255)

                                                                               tCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATg                                                                                           >  1:702522/1‑91 (MQ=255)

                                                                               tCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATg                                                                                           <  2:702522/91‑1 (MQ=255)

                                                                                ccccGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAgg                                          <  1:104671/139‑1 (MQ=255)

                                                                                      aCCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGa                                    >  1:576215/1‑139 (MQ=255)

                                                                                        ccccTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGaaa                                  >  1:631742/1‑139 (MQ=255)

                                                                                         cccTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGaaaa                                 >  1:1363478/1‑139 (MQ=255)

                                                                                          ccTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGc                                                         <  2:398231/114‑1 (MQ=255)

                                                                                          ccTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGc                                                         >  1:398231/1‑114 (MQ=255)

                                                                                          ccTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCa                                                        >  1:1107077/1‑115 (MQ=255)

                                                                                          ccTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCa                                                        <  2:1107077/115‑1 (MQ=255)

                                                                                          ccTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAAt                                                    <  2:537718/119‑1 (MQ=255)

                                                                                          ccTGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAAt                                                    >  1:537718/1‑119 (MQ=255)

                                                                                            tGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGcc                                                                                   <  1:1399137/86‑1 (MQ=255)

                                                                                            tGCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGcc                                                                                   >  2:1399137/1‑86 (MQ=255)

                                                                                             gCTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGAAAATGcc                             <  2:1513120/139‑1 (MQ=255)

                                                                                              cTATCCCAGTACGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGAAAATGCCt                            <  1:218490/139‑1 (MQ=255)

                                                                                                        aCGGCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGAAAATGCCTGCTTTAACGc                  >  1:449970/1‑139 (MQ=255)

                                                                                                           gCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCaa                                                                                 <  1:77450/73‑1 (MQ=255)

                                                                                                           gCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCaa                                                                                 >  2:77450/1‑73 (MQ=255)

                                                                                                           gCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGa                                                                  >  1:277803/1‑88 (MQ=255)

                                                                                                           gCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGa                                                                  <  2:277803/88‑1 (MQ=255)

                                                                                                           gCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAatat                                                             >  1:441420/1‑93 (MQ=255)

                                                                                                           gCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAatat                                                             <  2:441420/93‑1 (MQ=255)

                                                                                                           gCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGAAAATGCCTGCTTTAACGc                  >  1:585368/1‑136 (MQ=255)

                                                                                                           gCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGAAAATGCCTGCTTTAACGc                  <  2:585368/136‑1 (MQ=255)

                                                                                                           gCCATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGAAAATGCCTGCTTTAACGCcac               >  1:549570/1‑139 (MQ=255)

                                                                                                            ccATTCAGCAATCCCT‑TACTTTTGATGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGAAAATGCCTGCTTTAACGCcaca              >  1:937910/1‑139 (MQ=255)

                                                                                                            ccATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTggg                                                                   >  2:1093062/1‑86 (MQ=255)

                                                                                                            ccATTCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTggg                                                                   <  1:1093062/86‑1 (MQ=255)

                                                                                                               ttCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGc                                                         >  1:1066109/1‑93 (MQ=255)

                                                                                                               ttCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGc                                                         <  2:1066109/93‑1 (MQ=255)

                                                                                                                tCACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGAAAATGCCTGCTTTAACGCCACAatat          <  2:449970/139‑1 (MQ=255)

                                                                                                                 cACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCaa                                                                                                            <  1:16423/40‑1 (MQ=37)

                                                                                                                 cACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCaa                                                                                                            >  2:16423/1‑40 (MQ=37)

                                                                                                                 cACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAata                                                              >  1:660694/1‑86 (MQ=255)

                                                                                                                 cACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAata                                                              <  2:660694/86‑1 (MQ=255)

                                                                                                                 cACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCa                                            <  2:841300/104‑1 (MQ=255)

                                                                                                                 cACCAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCa                                            >  1:841300/1‑104 (MQ=255)

                                                                                                                    cAATCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGAAAATGCCTGCTTTAACGCCACAATATCAtt      <  1:1351799/139‑1 (MQ=255)

                                                                                                                      aTCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGc                                                         <  1:97384/86‑1 (MQ=255)

                                                                                                                      aTCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGc                                                         >  2:97384/1‑86 (MQ=255)

                                                                                                                       tCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGAAAATGCCTGCTTTAACGCCACAATATCATTCTg   >  2:1464666/1‑139 (MQ=255)

                                                                                                                       tCCCT‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGAAAATGCCTGCTTTAACGCCACAATATCATTCTg   <  2:649022/139‑1 (MQ=255)

                                                                                                                        ccct‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGAAAATGCCTGCTTTAACGCCACAATATCATTCTgg  <  2:1075809/139‑1 (MQ=255)

CATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGGTTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCC‑TACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCATAATCAATATCAGGCAGTGAAAATGCCTGCTTTAACGCCACAATATCATTCTGG  >  NC_000913/3695874‑3696132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A