Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F1 I1 R1 759 71.0 3673240 91.5% 3361014 104.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,931,183 (G)7→8 intergenic (‑90/‑133) ravA ← / → kup hexameric AAA+ MoxR family ATPase, putative molecular chaperone/potassium transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,931,1761.G97.5% 282.1 / ‑0.6 80intergenic (‑83/‑140)ravA/kuphexameric AAA+ MoxR family ATPase, putative molecular chaperone/potassium transporter
Reads supporting (aligned to +/- strand):  ref base . (1/1);  new base G (35/43);  total (36/44)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.23e-01

AACGAACTGCTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGAC  >  NC_000913/3931041‑3931309
                                                                                                                                        |                                                                                                                                       
aaCGAACTGCTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑ggg                                                                                                                                     >  1:1415520/1‑139 (MQ=255)
    aaCTGCTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑gggg‑ggg                                                                                                                                >  1:1490961/1‑139 (MQ=255)
         cTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAATTTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑gggg‑ggg                                                                                                                                >  1:1084252/1‑134 (MQ=255)
         cTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑gggg‑ggggtatt                                                                                                                           >  2:11343/1‑134 (MQ=255)
         cTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑gggg‑ggg                                                                                                                                <  2:1084252/134‑1 (MQ=255)
              gCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCt                                                                                                                       >  1:956808/1‑139 (MQ=255)
              gCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCt                                                                                                                       <  2:956808/139‑1 (MQ=255)
               cGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCtt                                                                                                                      <  2:790053/139‑1 (MQ=255)
                   aaaTTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAg                                                                                                                  <  2:1490961/139‑1 (MQ=255)
                   aaaTTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAg                                                                                                                  <  1:713615/139‑1 (MQ=255)
                    aaTTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGc                                                                                                                 <  1:300688/139‑1 (MQ=255)
                            ccGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTaa                                                                                                         >  2:570487/1‑139 (MQ=255)
                                taataaATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAAtgtg                                                                                                     >  1:1150643/1‑139 (MQ=255)
                                 aataaATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTgg                                                                                                    <  1:11343/139‑1 (MQ=255)
                                           ggTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑gggg‑g                                                                                                                                  >  2:1571154/1‑98 (MQ=255)
                                           ggTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑gggg‑g                                                                                                                                  <  1:1571154/98‑1 (MQ=255)
                                            gTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑gggg‑g                                                                                                                                  >  1:1733328/1‑97 (MQ=255)
                                            gTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑gggg‑g                                                                                                                                  <  2:1733328/97‑1 (MQ=255)
                                               aGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑GGGGAGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGt                                                                                      >  2:480544/1‑139 (MQ=255)
                                                             ggCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGAtttt                                                                              >  1:1401414/1‑133 (MQ=255)
                                                             ggCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGAtttt                                                                              <  2:1401414/133‑1 (MQ=255)
                                                              gCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGTCGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTa                                                                       <  1:217281/139‑1 (MQ=255)
                                                              gCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTgg                                                                                                    >  1:1108590/1‑110 (MQ=255)
                                                              gCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTa                                                                       >  2:217281/1‑139 (MQ=255)
                                                              gCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTa                                                                       <  2:1150643/139‑1 (MQ=255)
                                                              gCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTa                                                                       <  2:514794/139‑1 (MQ=255)
                                                              gCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTa                                                                       <  2:89503/139‑1 (MQ=255)
                                                              gCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑GGGGAGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTa                                                                       <  1:480544/139‑1 (MQ=255)
                                                              gCGTCCATTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTgg                                                                                                    <  2:1108590/110‑1 (MQ=255)
                                                               cGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTgg                                                                                                    <  1:378975/109‑1 (MQ=255)
                                                               cGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTgg                                                                                                    >  2:378975/1‑109 (MQ=255)
                                                                 tCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTgg                                                                                                    <  1:649795/108‑1 (MQ=255)
                                                                 tCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTgg                                                                                                    >  2:649795/1‑108 (MQ=255)
                                                                 tCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTgg                                                                                                    >  1:1413537/1‑107 (MQ=255)
                                                                 tCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTgg                                                                                                    <  2:1413537/107‑1 (MQ=255)
                                                                 tCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTgg                                                                                                    >  1:201147/1‑107 (MQ=255)
                                                                 tCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTgg                                                                                                    <  2:201147/107‑1 (MQ=255)
                                                                 tCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAg                                                                                       >  2:400268/1‑120 (MQ=255)
                                                                 tCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAg                                                                                       <  1:400268/120‑1 (MQ=255)
                                                                 tCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGt                                                                         >  1:1002047/1‑134 (MQ=255)
                                                                 tCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGt                                                                         <  2:1002047/134‑1 (MQ=255)
                                                                   cTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGt                                                                  >  2:1283430/1‑139 (MQ=255)
                                                                                  cTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGcc                                                                                                  >  2:176177/1‑92 (MQ=255)
                                                                                  cTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGcc                                                                                                  <  1:176177/92‑1 (MQ=255)
                                                                                  cTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCtt                                                   <  2:631443/139‑1 (MQ=255)
                                                                                  cTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCtt                                                   >  2:410263/1‑139 (MQ=255)
                                                                                   tGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGAtt                                                                                <  1:1654618/109‑1 (MQ=255)
                                                                                   tGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGAtt                                                                                >  2:1654618/1‑109 (MQ=255)
                                                                                     cGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACtgt                                                         <  2:157224/130‑1 (MQ=255)
                                                                                     cGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACtgt                                                         >  1:157224/1‑130 (MQ=255)
                                                                                          aTTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTgg                                           >  2:1746144/1‑139 (MQ=255)
                                                                                             gCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGcc                                        >  1:649102/1‑139 (MQ=255)
                                                                                              cGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCa                                       <  2:431095/139‑1 (MQ=255)
                                                                                               gAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGC‑TTTTTGTGGGCCa                                       >  1:739423/1‑137 (MQ=255)
                                                                                               gAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGC‑TTTTTGTGGGCCa                                       <  2:739423/137‑1 (MQ=255)
                                                                                               gAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑ggg                                                                                                                                     <  2:97662/44‑1 (MQ=255)
                                                                                               gAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑ggg                                                                                                                                     >  1:97662/1‑44 (MQ=255)
                                                                                                  tataGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAggg                                   <  2:1415520/139‑1 (MQ=255)
                                                                                                    taGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACt                                                           >  1:331483/1‑113 (MQ=255)
                                                                                                    taGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACt                                                           <  2:331483/113‑1 (MQ=255)
                                                                                                      gACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTtgtg                                            <  2:580184/126‑1 (MQ=255)
                                                                                                      gACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTtgtg                                            >  1:580184/1‑126 (MQ=255)
                                                                                                       aCGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACtgt                                                         <  1:235864/112‑1 (MQ=255)
                                                                                                       aCGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACtgt                                                         >  2:235864/1‑112 (MQ=255)
                                                                                                           ttCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCAttt                                                                                            >  1:1513388/1‑73 (MQ=255)
                                                                                                           ttCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCAttt                                                                                            <  2:1513388/73‑1 (MQ=255)
                                                                                                           ttCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGcac                          <  1:570487/139‑1 (MQ=255)
                                                                                                            tCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTa                                                                       <  1:525350/93‑1 (MQ=255)
                                                                                                            tCTTGCTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTa                                                                       >  2:525350/1‑93 (MQ=255)
                                                                                                                 cTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGa                                  >  1:1074469/1‑125 (MQ=255)
                                                                                                                 cTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGa                                  <  2:312773/125‑1 (MQ=255)
                                                                                                                 cTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGa                                  <  2:1074469/125‑1 (MQ=255)
                                                                                                                 cTGGTGGCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGa                                  >  1:312773/1‑125 (MQ=255)
                                                                                                                   ggtggCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCtt                                                                                                                      >  1:1303050/1‑39 (MQ=255)
                                                                                                                   ggtggCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCtt                                                                                                                      <  2:1303050/39‑1 (MQ=255)
                                                                                                                   ggtggCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGAtt                                                                                >  1:1398375/1‑77 (MQ=255)
                                                                                                                   ggtggCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGAtt                                                                                <  2:1398375/77‑1 (MQ=255)
                                                                                                                       gCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTgg                                                                                                    >  1:291118/1‑53 (MQ=255)
                                                                                                                       gCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTgg                                                                                                    <  2:291118/53‑1 (MQ=255)
                                                                                                                       gCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGTTTTTTtgtg                                            >  2:163753/1‑109 (MQ=255)
                                                                                                                       gCTAAAATAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTtgtg                                            <  1:163753/109‑1 (MQ=255)
                                                                                                                             aTAGTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACg        <  1:1746144/139‑1 (MQ=255)
                                                                                                                                gTCTCAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGaaa     >  1:963356/1‑139 (MQ=255)
                                                                                                                                 tctcAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCa                                       <  1:326143/104‑1 (MQ=255)
                                                                                                                                 tctcAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCa                                       >  2:326143/1‑104 (MQ=255)
                                                                                                                                 tctcAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAggg                                   >  2:779999/1‑108 (MQ=255)
                                                                                                                                 tctcAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAggg                                   <  1:779999/108‑1 (MQ=255)
                                                                                                                                 tctcAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAg    >  1:623871/1‑139 (MQ=255)
                                                                                                                                  ctcAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGa   <  2:192020/139‑1 (MQ=255)
                                                                                                                                   tcAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGAc  <  2:623871/139‑1 (MQ=255)
                                                                                                                                   tcAAAG‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGAc  <  2:963356/139‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
AACGAACTGCTCAGGCGGGAAATTCTTTCCGCTAATAAATGAGGGTGAGCCATAATGAAGTGGCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAA‑‑GGGG‑GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGAC  >  NC_000913/3931041‑3931309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A