Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F1 I2 R1	760	67.6	3323148	92.7%	3080558	109.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,240,984	(G)_7→8	coding (1041/1245 nt)	sstT →	sodium:serine/threonine symporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,240,977	1	.	G	98.5%	240.3 / ‑3.6	68	coding (1034/1245 nt)	sstT	sodium:serine/threonine symporter
Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (35/32); total (36/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

TATGGCGGGCGCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑G‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGAAACCGCGCTGAACTC  >  NC_000913/3240840‑3241109

tatGGCGGGCGCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑g                                                                                                                                      <  2:1244477/139‑1 (MQ=255)

    gcgggcgCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑g‑gggg                                                                                                                                 >  1:761275/1‑139 (MQ=255)

    gcgggcgCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑g‑gggg                                                                                                                                 >  1:457710/1‑139 (MQ=255)

    gcgggcgCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑g‑g                                                                                                                                    >  2:603128/1‑136 (MQ=255)

    gcgggcgCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑g‑g                                                                                                                                    <  1:603128/136‑1 (MQ=255)

     cgggcgCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGGGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑g‑ggggg                                                                                                                                >  2:16488/1‑139 (MQ=255)

     cgggcgCAGCAATCACTATTACCGGGTTGACGCTGGCTGCGGTTAATACGCTGGGGATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGGGGTGGCGTCTCTTTGTGCCTGTGGCGCATCCGGCGTGgg‑g‑ggggg                                                                                                                                >  2:1484095/1‑139 (MQ=255)

       ggcgCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑g‑ggggggg                                                                                                                              >  1:677570/1‑138 (MQ=255)

           cagcaATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑g‑gggggggtctc                                                                                                                          <  2:1282067/139‑6 (MQ=255)

           cagcaATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑g‑gggggggtctc                                                                                                                          <  1:406574/139‑6 (MQ=255)

           cagcaATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑g‑gggggggtctc                                                                                                                          <  1:1332169/139‑6 (MQ=255)

                  cACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTctgctgct                                                                                                                    >  1:449755/1‑139 (MQ=255)

                         aCCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCa                                                                                                             <  1:576225/139‑1 (MQ=255)

                         aCCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCa                                                                                                             <  1:113437/139‑1 (MQ=255)

                         aCCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCa                                                                                                             <  2:677570/139‑1 (MQ=255)

                          ccGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑g‑ggg                                                                                                                                  <  2:748539/116‑1 (MQ=255)

                          ccGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑g‑ggg                                                                                                                                  >  1:748539/1‑116 (MQ=255)

                             tgtTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCa                                                                                                             <  2:1423052/135‑1 (MQ=255)

                             tgtTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCa                                                                                                             >  1:1423052/1‑135 (MQ=255)

                              gtTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGc                                                                                                        <  2:334615/139‑1 (MQ=255)

                               ttGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTctgctg                                                                                                                      <  1:924223/124‑1 (MQ=255)

                               ttGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTctgctg                                                                                                                      >  2:924223/1‑124 (MQ=255)

                               ttGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTctgct                                                                                                                       <  1:594339/123‑1 (MQ=255)

                               ttGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTctgct                                                                                                                       >  2:594339/1‑123 (MQ=255)

                               ttGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGcc                                                                                                       >  2:127307/1‑139 (MQ=255)

                                 gACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTg                                                                                                     >  2:1392799/1‑139 (MQ=255)

                                 gACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTg                                                                                                     >  2:78548/1‑139 (MQ=255)

                                   cGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTa                                                                                                   <  1:1392799/139‑1 (MQ=255)

                                   cGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTa                                                                                                   <  1:685401/139‑1 (MQ=255)

                                     ctggctgCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAat                                                                                                 <  2:148573/139‑1 (MQ=255)

                                     ctggctgCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAat                                                                                                 <  1:16488/139‑1 (MQ=255)

                                         ctgCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCa                                                                                                             >  1:1539266/1‑123 (MQ=255)

                                         ctgCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCa                                                                                                             <  2:1539266/123‑1 (MQ=255)

                                         ctgCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGc                                                                                                        <  1:684170/128‑1 (MQ=255)

                                         ctgCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGc                                                                                                        >  2:684170/1‑128 (MQ=255)

                                         ctgCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGt                                                                                             >  1:563928/1‑139 (MQ=255)

                                                  aTACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTa                                                                                                   <  1:394215/124‑1 (MQ=255)

                                                  aTACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTa                                                                                                   >  2:394215/1‑124 (MQ=255)

                                                      gCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGaa                                                                                >  1:334540/1‑139 (MQ=255)

                                                      gCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGaa                                                                                <  1:127307/139‑1 (MQ=255)

                                                        tGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAatat                                                                                               <  1:1552951/122‑1 (MQ=255)

                                                        tGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAatat                                                                                               >  2:1552951/1‑122 (MQ=255)

                                                        tGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑g‑ggg                                                                                                                                  <  2:927961/86‑1 (MQ=255)

                                                        tGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑g‑ggg                                                                                                                                  >  1:927961/1‑86 (MQ=255)

                                                         gggTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCa                                                                                                             <  2:1516507/107‑1 (MQ=255)

                                                         gggTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCa                                                                                                             >  1:1516507/1‑107 (MQ=255)

                                                         gggTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCCCTGCCCt                                                                                                      >  1:1511382/1‑114 (MQ=255)

                                                         gggTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCt                                                                                                      <  2:1511382/114‑1 (MQ=255)

                                                         gggTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGa                                                                             <  1:674849/139‑1 (MQ=255)

                                                             aTTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCa                                                                                                             >  2:455818/1‑103 (MQ=255)

                                                             aTTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCa                                                                                                             <  1:455818/103‑1 (MQ=255)

                                                                    tCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGc                                                                                                        <  1:10419/101‑1 (MQ=255)

                                                                    tCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGc                                                                                                        >  2:10419/1‑101 (MQ=255)

                                                                    tCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTCATATGTTCGGTATTTCGAACGATATCGCCATGc                                                                  >  1:221001/1‑139 (MQ=255)

                                                                    tCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGc                                                                  >  1:914381/1‑139 (MQ=255)

                                                                          tGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAggtgg                                                            <  1:541311/139‑1 (MQ=255)

                                                                                cGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCg                                                      <  2:914381/139‑1 (MQ=255)

                                                                                 ggCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGt                                                     >  2:761482/1‑139 (MQ=255)

                                                                                 ggCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGt                                                     >  1:1317502/1‑139 (MQ=255)

                                                                                                     tggCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTAt                                 >  1:693048/1‑139 (MQ=255)

                                                                                                             ttgtgtgCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGAc                         <  2:221001/138‑1 (MQ=255)

                                                                                                               gtgtgCCTGTGGCGCATCCGGCGTGGC‑GAGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGActc                       >  1:741294/1‑139 (MQ=255)

                                                                                                                  tgCCTGTGGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTg                    >  2:245417/1‑139 (MQ=255)

                                                                                                                        tgGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTatcat                                         >  1:1121763/1‑112 (MQ=255)

                                                                                                                        tgGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTatcat                                         <  2:1121763/112‑1 (MQ=255)

                                                                                                                        tgGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTatca                                          <  2:809553/111‑1 (MQ=255)

                                                                                                                        tgGCGCATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTatca                                          >  1:809553/1‑111 (MQ=255)

                                                                                                                          gcgcATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTgg                                                                                                         <  2:121172/46‑1 (MQ=255)

                                                                                                                          gcgcATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTgg                                                                                                         >  1:121172/1‑46 (MQ=39)

                                                                                                                          gcgcATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGaaa               <  1:1149252/136‑1 (MQ=255)

                                                                                                                          gcgcATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGaaa               >  2:1149252/1‑136 (MQ=255)

                                                                                                                          gcgcATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGAAACcg            >  1:1213071/1‑139 (MQ=255)

                                                                                                                            gcATCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGAAACcgcg          <  1:1484095/139‑1 (MQ=255)

                                                                                                                               tCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCa                                                                                                             >  1:309852/1‑37 (MQ=255)

                                                                                                                               tCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCa                                                                                                             <  2:309852/37‑1 (MQ=255)

                                                                                                                               tCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAat                                                                                                 >  1:894910/1‑49 (MQ=255)

                                                                                                                               tCCGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAat                                                                                                 <  2:894910/49‑1 (MQ=255)

                                                                                                                                ccGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGAAACCGCGCTGa      >  2:520244/1‑139 (MQ=255)

                                                                                                                                 cGGCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGAAACCGCGCTGaa     >  1:681890/1‑139 (MQ=255)

                                                                                                                                   gCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTgg                                                                                                         <  2:602017/37‑1 (MQ=255)

                                                                                                                                   gCGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTgg                                                                                                         >  1:602017/1‑37 (MQ=255)

                                                                                                                                    cGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGAAACCGCGCTGAActc  >  1:382135/1‑139 (MQ=255)

                                                                                                                                    cGTGGCGG‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGAAACCGCGCTGAActc  >  2:922444/1‑139 (MQ=255)

TATGGCGGGCGCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑G‑GGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGAAACCGCGCTGAACTC  >  NC_000913/3240840‑3241109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A