Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F1 I2 R1	760	67.6	3323148	92.7%	3080558	109.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,728,118	(C)_8→9	coding (1254/1455 nt)	xylB ←	xylulokinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,728,110	1	.	C	95.2%	207.0 / 2.3	63	coding (1262/1455 nt)	xylB	xylulokinase
Reads supporting (aligned to +/- strand): ref base . (1/2); new base C (27/33); total (28/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.53e-01

GGCTGATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCATGCACGACATCCA  >  NC_000913/3727972‑3728242

ggCTGATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAt                                                                                                                                        >  2:384769/1‑139 (MQ=255)

ggCTGATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAt                                                                                                                                        >  1:1394998/1‑139 (MQ=255)

 gCTGATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAT‑‑c                                                                                                                                     <  1:1375667/139‑1 (MQ=255)

       aaGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAT‑‑ccccccc                                                                                                                               <  1:384769/139‑1 (MQ=255)

          cGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAT‑‑cccccccccg                                                                                                                            <  2:819104/139‑3 (MQ=255)

              aTAACTCTGCGCATCTGGTTGATTGGGCTGGTCTAACGGTAGGTGCCGCAACCATTCAATGAGCCATTTCTCTGGATTCCGCGCGATCTGGGCCAGCCTTGCCGCGCCCAGTGCTGGCCCCAAAAC‑‑CCCCCCCCGTACg                                                                                                                         <  1:93770/139‑1 (MQ=255)

              aTAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACg                                                                                                                         >  1:477331/1‑139 (MQ=255)

               tAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACgg                                                                                                                        >  1:166092/1‑139 (MQ=255)

                       cgcATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTCCGCTAATCggg                                                                                                                >  2:93770/1‑137 (MQ=255)

                       cgcATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAg                                                                                                                >  1:785200/1‑139 (MQ=255)

                       cgcATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAg                                                                                                                <  2:848431/139‑1 (MQ=255)

                       cgcATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAg                                                                                                                <  1:879670/139‑1 (MQ=255)

                       cgcATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAg                                                                                                                >  1:1551993/1‑139 (MQ=255)

                            cTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAgctgct                                                                                                           <  2:477331/139‑1 (MQ=255)

                            cTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAgctgct                                                                                                           <  2:1223558/139‑1 (MQ=255)

                              ggTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGa                                                                                                         <  2:1551993/139‑1 (MQ=255)

                                 aGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAT‑‑cccccccccg                                                                                                                            <  2:1073626/116‑3 (MQ=255)

                                 aGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAT‑‑cccccccccg                                                                                                                            >  1:1073626/1‑114 (MQ=255)

                                      cGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGat                                                                                                 >  2:1411572/1‑139 (MQ=255)

                                      cGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGat                                                                                                 >  2:356287/1‑139 (MQ=255)

                                           gTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCg                                                                                            <  2:785200/139‑1 (MQ=255)

                                             tCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATCCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGc                                                                                           <  1:1410594/139‑1 (MQ=255)

                                               tAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAg                                                                                        <  1:1411572/139‑1 (MQ=255)

                                                      aGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGa                                                                                 >  1:994747/1‑139 (MQ=255)

                                                      aGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGa                                                                                 <  1:701112/139‑1 (MQ=255)

                                                      aGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGa                                                                                 >  1:389374/1‑139 (MQ=255)

                                                      aGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAT‑‑cccc                                                                                                                                  <  2:1008949/89‑1 (MQ=255)

                                                      aGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGACGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAT‑‑cccc                                                                                                                                  >  1:1008949/1‑89 (MQ=255)

                                                        ttGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACg                                                                               <  2:389374/139‑1 (MQ=255)

                                                        ttGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACg                                                                               <  1:356287/139‑1 (MQ=255)

                                                        ttGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACg                                                                               <  1:1538292/139‑1 (MQ=255)

                                                        ttGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACg                                                                               >  2:483823/1‑139 (MQ=255)

                                                        ttGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGACCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGGAGCTGACCGCTGATATCCGCCAACATcggccg                                                                               >  1:914338/1‑134 (MQ=255)

                                                           cGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAACTGCTGACCGCTGATATCCGCCAGCATCTGACGCCa                                                                            >  1:284678/1‑139 (MQ=255)

                                                             gCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCa                                                                                         <  1:1089613/124‑1 (MQ=255)

                                                             gCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCa                                                                                         >  2:1089613/1‑124 (MQ=255)

                                                                        aTGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGa                                                                                                         <  2:1572311/97‑1 (MQ=255)

                                                                        aTGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGAAATCGGGCTGCTGa                                                                                                         >  1:1572311/1‑97 (MQ=255)

                                                                         tGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACg                                                                               >  1:828527/1‑122 (MQ=255)

                                                                         tGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACg                                                                               <  2:828527/122‑1 (MQ=255)

                                                                           aGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTATTCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgcc                                                            >  2:977693/1‑139 (MQ=255)

                                                                           aGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgcc                                                            >  1:950753/1‑139 (MQ=255)

                                                                            gCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAt                                                                                                                                        >  2:662471/1‑63 (MQ=255)

                                                                            gCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAt                                                                                                                                        <  1:662471/63‑1 (MQ=255)

                                                                              gATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATCCCCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCACCATCTGCCGCCAGTACTCACTACGcccccc                                                          >  2:1228344/1‑139 (MQ=255)

                                                                                    tctGGATTCGCCGCGATCTGCGCCGGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCa                                                   <  2:895520/139‑1 (MQ=255)

                                                                                      tGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAAt                                                 <  2:242379/139‑1 (MQ=255)

                                                                                      tGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAAt                                                 <  1:1396450/139‑1 (MQ=255)

                                                                                      tGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAAt                                                 <  1:977693/139‑1 (MQ=255)

                                                                                      tGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAAt                                                 <  1:955197/139‑1 (MQ=255)

                                                                                             gccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAT‑‑cc                                                                                                                                    <  2:1224534/48‑1 (MQ=255)

                                                                                             gccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAT‑‑cc                                                                                                                                    >  1:1224534/1‑48 (MQ=255)

                                                                                              ccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgccccgccc                                                      >  1:1478233/1‑126 (MQ=255)

                                                                                              ccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGcgccccgccc                                                      <  2:1478233/126‑1 (MQ=255)

                                                                                              ccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTaa                                         >  1:1254660/1‑139 (MQ=255)

                                                                                              ccgcGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAac                                        >  2:352175/1‑139 (MQ=255)

                                                                                                  gATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCCTCTGa                                                                                 >  2:997308/1‑95 (MQ=255)

                                                                                                  gATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGa                                                                                 <  1:997308/95‑1 (MQ=255)

                                                                                                     cTGCGCCATCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATGTCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTg                                  <  1:983949/139‑1 (MQ=255)

                                                                                                     cTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTg                                  <  2:166092/139‑1 (MQ=255)

                                                                                                     cTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTg                                  <  1:483823/139‑1 (MQ=255)

                                                                                                       gcgcCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAT‑‑cccccccccgta                                                                                                                          <  2:548721/48‑5 (MQ=255)

                                                                                                       gcgcCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAT‑‑cccccccccgta                                                                                                                          >  1:548721/1‑44 (MQ=255)

                                                                                                             gCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTGCGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGtttta                          <  2:994747/139‑3 (MQ=255)

                                                                                                             gCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTaa                          >  1:981582/1‑139 (MQ=255)

                                                                                                             gCCTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGACATCCGCCAGCACCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTaa                          >  2:1022695/1‑139 (MQ=255)

                                                                                                              ccTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCt                                                                                   >  2:1335672/1‑81 (MQ=255)

                                                                                                              ccTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCt                                                                                   <  1:1335672/81‑1 (MQ=255)

                                                                                                              ccTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTAcgc                                                               <  1:809843/101‑1 (MQ=255)

                                                                                                              ccTTGCTGCGCCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCCCCAGCATCTGACGCCAGTACTCACTAcgc                                                               >  2:809843/1‑101 (MQ=255)

                                                                                                                     gcgcACAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGAGATGCGGCAGCAGCTGGCGCCAGTACTCACTACGGGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAg                  <  2:914338/139‑1 (MQ=255)

                                                                                                                       gcCCAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGc                <  2:437172/139‑1 (MQ=255)

                                                                                                                       gcCCAGTGCTGGCCCC‑ACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCa               <  1:352175/139‑1 (MQ=255)

                                                                                                                        cccAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGc                                                                              <  1:215085/76‑1 (MQ=255)

                                                                                                                        cccAGTGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGc                                                                              >  2:215085/1‑76 (MQ=255)

                                                                                                                             tGCTGGCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGTCGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCATGCAc          <  2:950753/139‑1 (MQ=255)

                                                                                                                                  gCCCC‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGGCCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCATGCACGACAt     >  1:1334492/1‑139 (MQ=255)

                                                                                                                                     cc‑ACATC‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCATGCACGACATCCa  <  1:1496827/139‑1 (MQ=255)

GGCTGATAAGCGGCATAACGCTGCGCATCTGGTAGATGCGACTGTTCTAACGGTAGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGGCCCC‑ACAT‑‑CCCCCCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTGCGGTTTAATACCGCAGGCATGCACGACATCCA  >  NC_000913/3727972‑3728242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A