Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F1 I2 R1	766	55.6	2631458	94.7%	2491990	109.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,970,015	T→C	W329R (TGG→CGG)	wzzE →	Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,970,015	0	T	C	100.0%	221.1 / NA	64	W329R (TGG→CGG)	wzzE	Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (32/32); total (32/32)

AGAATCGGGCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTG‑TC‑GGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAGCAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCGAAGAGAATCGATGTGAAAGTACTGACTG  >  NC_000913/3969881‑3970148

aGAATCGGGCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCgggg                                                                                                                                      <  2:23516/139‑1 (MQ=255)

  aaTCGGGCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCa                                                                                                                                    >  1:308496/1‑139 (MQ=255)

   aTCGGGCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTAGTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCAt                                                                                                                                   >  2:768237/1‑139 (MQ=255)

       ggCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑Tc                                                                                                                              >  1:643918/1‑139 (MQ=255)

       ggCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑Tc                                                                                                                              >  2:253304/1‑139 (MQ=255)

       ggCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑Tc                                                                                                                              >  1:1234076/1‑139 (MQ=255)

                       cTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCggg                                                                                                             >  1:187832/1‑139 (MQ=255)

                       cTGAATGTTGGTCAAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCGTTG‑TCGGGGGGG‑CTGATCggg                                                                                                             >  1:771448/1‑139 (MQ=255)

                          aaTGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TC‑GGGGGG‑CTGATCGGGGCTg                                                                                                         >  1:777993/1‑139 (MQ=255)

                            tGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TC‑GGGGGG‑CTGATCGGGGCTGgt                                                                                                       <  2:777993/139‑1 (MQ=255)

                              ttGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGgtg                                                                                                      <  2:1234076/139‑1 (MQ=255)

                                           ggATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACccg                                                                                         >  1:516847/1‑139 (MQ=255)

                                            gATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TC‑GGGGGGCCTGATCGGGGCTGGTGTCGCATTAACccgc                                                                                        >  2:766640/1‑139 (MQ=255)

                                                cgcgTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAAcc                                                                                           <  2:84476/132‑1 (MQ=255)

                                                cgcgTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAAcc                                                                                           >  1:84476/1‑132 (MQ=255)

                                                 gcgTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTg                                                                                   >  1:1069538/1‑139 (MQ=255)

                                                  cgTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGc                                                                                  >  1:1296764/1‑139 (MQ=255)

                                                  cgTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGc                                                                                  >  2:759488/1‑139 (MQ=255)

                                                  cgTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGc                                                                                  >  1:552209/1‑139 (MQ=255)

                                                   gTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCt                                                                                 <  2:516847/139‑1 (MQ=255)

                                                   gTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCt                                                                                 <  1:766640/139‑1 (MQ=255)

                                                   gTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCt                                                                                 <  1:616625/139‑1 (MQ=255)

                                                   gTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCt                                                                                 <  1:253304/139‑1 (MQ=255)

                                                    ttttCCGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCCGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTc                                                                                <  1:819087/139‑1 (MQ=255)

                                                      ttCAGACCTTTCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGa                                                                              <  2:902071/139‑1 (MQ=255)

                                                               aTCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGc                                                                                                                                     <  1:600694/77‑1 (MQ=255)

                                                               aTCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGc                                                                                                                                     >  2:600694/1‑77 (MQ=255)

                                                                tCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTTCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAacaaca                                                                    >  1:1168937/1‑139 (MQ=255)

                                                                tCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAacaaca                                                                    >  1:670900/1‑139 (MQ=255)

                                                                tCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAacaaca                                                                    <  2:601751/139‑1 (MQ=255)

                                                                          cGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGt                                                          >  2:741723/1‑139 (MQ=255)

                                                                              cGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGa                                                                              >  1:1159230/1‑115 (MQ=255)

                                                                              cGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGa                                                                              <  2:1159230/115‑1 (MQ=255)

                                                                                    aagaaCCGGTAAAACGCGATAGCCCACGCCGTGCCTTCCTGATGATTATGCGGGGCATTGTTG‑GGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAg                                                >  2:436546/1‑139 (MQ=255)

                                                                                       aaCCGGGAAAACGCGATAGCCGACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTCCTGCGGTGAGCGCAAAGgcg                                             <  2:771448/139‑1 (MQ=255)

                                                                                         ccGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACaa                                                                      >  1:1040399/1‑112 (MQ=255)

                                                                                         ccGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACaa                                                                      <  2:1040399/112‑1 (MQ=255)

                                                                                         ccGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACActg                                                                 >  2:137566/1‑117 (MQ=255)

                                                                                         ccGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACActg                                                                 <  1:137566/117‑1 (MQ=255)

                                                                                         ccGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCt                                           >  1:954555/1‑139 (MQ=255)

                                                                                          cGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTc                                          <  1:436546/139‑1 (MQ=255)

                                                                                              aaaaCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCAtt                                                                                                                                  <  2:111322/49‑1 (MQ=255)

                                                                                              aaaaCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCAtt                                                                                                                                  >  1:111322/1‑49 (MQ=255)

                                                                                              aaaaCGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTcgccg                                      <  2:643918/139‑1 (MQ=255)

                                                                                                   gcgATAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTAt                                 <  2:1296764/139‑1 (MQ=255)

                                                                                                      aTAGCCCACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCg                              >  2:1110304/1‑139 (MQ=255)

                                                                                                          cccACGTCGTGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCGAaga                          >  2:407989/1‑139 (MQ=255)

                                                                                                                 cgtGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGTTCGGGGTTGGTGTCGCATTAACCCGCCGTTGCTCGAAAGAACAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCGAAGAGAATCGa                   <  2:308496/139‑1 (MQ=255)

                                                                                                                 cgtGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCGAAGAGAATCGa                   <  2:954555/139‑1 (MQ=255)

                                                                                                                 cgtGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCGAAGAGAATCGa                   <  1:1110304/139‑1 (MQ=255)

                                                                                                                 cgtGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCGAAGAGAATCGa                   <  1:1138521/139‑1 (MQ=255)

                                                                                                                 cgtGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCGAAGAGAATCGa                   <  2:1069538/139‑1 (MQ=255)

                                                                                                                   tGCCTTCCTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCGAAGAGAATCGAtg                 >  2:542137/1‑139 (MQ=255)

                                                                                                                         ccTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATaa                                                                         <  1:797932/77‑2 (MQ=255)

                                                                                                                         ccTGATGATTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATaa                                                                         >  2:797932/1‑76 (MQ=255)

                                                                                                                             atgatTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGgtg                                                                                                      <  2:1131055/44‑1 (MQ=255)

                                                                                                                             atgatTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGgtg                                                                                                      >  1:1131055/1‑44 (MQ=255)

                                                                                                                             atgatTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCGAAGAGAATCGATGTGAAAGTact       <  2:670900/139‑1 (MQ=255)

                                                                                                                               gatTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCGAAGAGAATCGATGTGAAAGTactga     <  2:1168937/139‑1 (MQ=255)

                                                                                                                                atTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCGAAGAGAATCGATGTGAAAGTactgac    <  1:542137/139‑1 (MQ=255)

                                                                                                                                atTATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCGAAGAGAATCGATGTGAAAGTactgac    <  2:187832/139‑1 (MQ=255)

                                                                                                                                  tATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAAt                                                                           <  2:1191405/66‑1 (MQ=255)

                                                                                                                                  tATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAAt                                                                           >  1:1191405/1‑66 (MQ=255)

                                                                                                                                  tATGCGGGGCATTG‑TCGGGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAACAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCGAAGAGAATCGATGTGAAAGTactgactg  >  2:272788/1‑139 (MQ=255)

AGAATCGGGCCATGTTAAACACCCTGAATGTTGGTCCAACCCTGGATCCGCGTTTTCAGACCTATCGCTATTTGCGTACGCCGGAAGAACCGGTAAAACGCGATAGCCCACGTCGTGCCTTCCTGATGATTATGTGGGGCATTG‑TC‑GGGGGG‑CTGATCGGGGCTGGTGTCGCATTAACCCGCCGTTGCTCGAAATAGCAACACTGCTGCGGTGAGCGCAAAGGCGCTCGCCGCTTATTCGAAGAGAATCGATGTGAAAGTACTGACTG  >  NC_000913/3969881‑3970148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A