Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F1 I1 R1
|
759 |
65.2 |
3386260 |
90.7% |
3071337 |
101.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,815,863 |
C→T |
pseudogene (19/48 nt) |
rph ← |
ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,815,863 | 0 | C | T | 100.0%
| 161.9
/ NA
| 50 | pseudogene (19/48 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (25/25); total (25/25) |
CAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGG > NC_000913/3815741‑3815996
|
cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGgattcgatt < 1:1489780/139‑1 (MQ=255)
aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑cc > 1:988213/1‑139 (MQ=255)
gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGc < 2:238448/139‑1 (MQ=255)
gcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCa < 2:1649243/139‑1 (MQ=255)
atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCt > 1:11410/1‑128 (MQ=255)
atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCt < 2:11410/128‑1 (MQ=255)
ttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCACCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAg < 1:856398/139‑1 (MQ=255)
aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCa < 2:996204/125‑1 (MQ=255)
aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCa > 1:996204/1‑125 (MQ=255)
tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATgg > 1:206950/1‑99 (MQ=255)
tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATgg < 2:206950/99‑1 (MQ=255)
cATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTctgg < 2:988213/139‑4 (MQ=255)
ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAg > 1:236751/1‑122 (MQ=255)
ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAg < 2:236751/122‑1 (MQ=255)
ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTg > 2:1349485/1‑134 (MQ=255)
ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTg < 1:1349485/134‑1 (MQ=255)
tCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGc > 2:1294925/1‑139 (MQ=255)
tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGc > 2:977323/1‑139 (MQ=255)
aGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGTGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAg > 2:618609/1‑114 (MQ=255)
aGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGTGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAg < 1:618609/114‑1 (MQ=255)
aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCt < 1:1518165/84‑1 (MQ=255)
aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCt > 2:1518165/1‑84 (MQ=255)
aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGc > 2:448736/1‑139 (MQ=255)
gCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg < 1:448736/139‑1 (MQ=255)
cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCt < 1:1652787/74‑1 (MQ=255)
cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCt > 2:1652787/1‑74 (MQ=255)
aCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg > 1:1507430/1‑136 (MQ=255)
aCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg < 2:1507430/136‑1 (MQ=255)
aCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCAc > 1:43908/1‑139 (MQ=255)
gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgc > 1:1331955/1‑139 (MQ=255)
ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcg > 2:923962/1‑139 (MQ=255)
ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTg > 2:1161407/1‑112 (MQ=255)
ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTg < 1:1161407/112‑1 (MQ=255)
tAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTa < 1:289206/82‑1 (MQ=255)
tAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTa > 2:289206/1‑82 (MQ=255)
ttGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca < 2:1331955/139‑1 (MQ=255)
ttGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca < 2:43908/139‑1 (MQ=255)
tGCCAGCGCCGCCTTCTGCGTCGTTACAATGgattcgatt > 2:891245/1‑40 (MQ=255)
tGCCAGCGCCGCCTTCTGCGTCGTTACAATGgattcgatt < 1:891245/40‑1 (MQ=255)
tGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat > 1:602551/1‑139 (MQ=255)
aGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt < 2:452632/139‑1 (MQ=255)
cgccgcCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGcc > 2:314162/1‑120 (MQ=255)
cgccgcCTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGcc < 1:314162/120‑1 (MQ=255)
ccgccTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAg < 2:1030692/63‑1 (MQ=255)
ccgccTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGCCCAGAGCCAACAAGATGAGTAg > 1:1030692/1‑63 (MQ=255)
ccTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCa > 2:846107/1‑139 (MQ=255)
cTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTc < 2:216927/65‑1 (MQ=255)
cTTCTGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTc > 1:216927/1‑65 (MQ=255)
tGCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg < 1:977323/139‑1 (MQ=255)
gCGTCGTTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTC‑TGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCgg > 1:674986/1‑139 (MQ=255)
|
CAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATT‑‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGG > NC_000913/3815741‑3815996
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
