Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 773 79.9 4112934 92.2% 3792125 104.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,815,863 C→T pseudogene (19/48 nt) rph ← ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,815,8630CT100.0% 232.7 / NA 71pseudogene (19/48 nt)rphribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (35/36);  total (35/36)

TAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCG  >  NC_000913/3815729‑3815995
                                                                                                                                      |                                                                                                                                    
tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACa                                                                                                                                  <  2:392308/139‑1 (MQ=255)
                   cTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCg                                                                                                               >  2:1738856/1‑139 (MQ=255)
                            atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGcc                                                                                                     <  2:76580/139‑1 (MQ=255)
                            atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGcc                                                                                                     <  1:1713624/139‑1 (MQ=255)
                                      aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCca                                                                                                    >  1:1921820/1‑130 (MQ=255)
                                      aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCca                                                                                                    <  2:1921820/130‑1 (MQ=255)
                                      aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGa                                                                                           >  1:769493/1‑139 (MQ=255)
                                      aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGa                                                                                           >  2:1014622/1‑139 (MQ=255)
                                      aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGa                                                                                           >  2:1660888/1‑139 (MQ=255)
                                      aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGa                                                                                           <  1:1738856/139‑1 (MQ=255)
                                          cTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAg                                                                                       <  2:769493/139‑1 (MQ=255)
                                          cTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAg                                                                                       <  1:1660888/139‑1 (MQ=255)
                                           ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGc                                                                                      >  1:1932236/1‑139 (MQ=255)
                                           ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGc                                                                                      <  2:1932236/139‑1 (MQ=255)
                                            tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg                                                                                               >  1:230860/1‑129 (MQ=255)
                                            tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg                                                                                               <  2:230860/129‑1 (MQ=255)
                                                    cATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGgattcgat                                                                                                                       >  1:1500879/1‑98 (MQ=255)
                                                    cATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGgattcgat                                                                                                                       <  2:1500879/98‑1 (MQ=255)
                                                     aTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg                                                                                               >  2:775215/1‑120 (MQ=255)
                                                     aTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg                                                                                               <  1:775215/120‑1 (MQ=255)
                                                          aCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAg                                                                                          >  1:816829/1‑120 (MQ=255)
                                                          aCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAg                                                                                          <  2:816829/120‑1 (MQ=255)
                                                          aCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCT‑TGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAAc                                                                       >  2:356156/1‑139 (MQ=255)
                                                               tCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCcaac                                                                                                  >  2:647633/1‑107 (MQ=255)
                                                               tCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCcaac                                                                                                  <  1:647633/107‑1 (MQ=255)
                                                                 tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGgattcgat                                                                                                                       >  2:1692032/1‑85 (MQ=255)
                                                                 tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGgattcgat                                                                                                                       <  1:1692032/85‑1 (MQ=255)
                                                                 tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc                                                                    >  2:420940/1‑135 (MQ=255)
                                                                 tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc                                                                    <  1:420940/135‑1 (MQ=255)
                                                                  aCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGcc                                                               <  1:1783097/139‑1 (MQ=255)
                                                                   cAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCt                                                              >  1:1928229/1‑139 (MQ=255)
                                                                      aCAAAAAAAAGGCGACTGATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATCGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCt                                                           >  1:1179309/1‑139 (MQ=255)
                                                                      aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGgattcgat                                                                                                                       <  2:185738/80‑1 (MQ=255)
                                                                      aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGgattcgat                                                                                                                       >  1:185738/1‑80 (MQ=255)
                                                                      aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAG‑‑CTTCATGGGTGAACGGCTCGCCTTCTGc                                                         >  1:880066/1‑139 (MQ=255)
                                                                                ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAg                                                                                          >  1:655201/1‑98 (MQ=255)
                                                                                ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAg                                                                                          <  2:655201/98‑1 (MQ=255)
                                                                                ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc                                                                    <  1:1750935/120‑1 (MQ=255)
                                                                                ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc                                                                    >  2:1750935/1‑120 (MQ=255)
                                                                                      tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg                                                                                               >  2:503284/1‑87 (MQ=255)
                                                                                      tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg                                                                                               <  1:503284/87‑1 (MQ=255)
                                                                                      tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACtt                                           <  2:1928229/139‑1 (MQ=255)
                                                                                               gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGa                                                                         >  2:280340/1‑100 (MQ=255)
                                                                                               gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGa                                                                         <  1:280340/100‑1 (MQ=255)
                                                                                               gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc                                                                    <  2:1662417/105‑1 (MQ=255)
                                                                                               gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc                                                                    >  1:1662417/1‑105 (MQ=255)
                                                                                               gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg                                                <  2:873727/125‑1 (MQ=255)
                                                                                               gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg                                                >  1:873727/1‑125 (MQ=255)
                                                                                                ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGct                                                                                     >  2:1689534/1‑87 (MQ=255)
                                                                                                ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGct                                                                                     <  1:1689534/87‑1 (MQ=255)
                                                                                                ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCtt                                                                                  <  1:524494/90‑1 (MQ=255)
                                                                                                ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCtt                                                                                  >  2:524494/1‑90 (MQ=255)
                                                                                                  ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGcc                               >  1:720209/1‑139 (MQ=255)
                                                                                                  ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGcc                               >  1:441620/1‑139 (MQ=255)
                                                                                                    aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCggc                                                                                                             >  2:1475761/1‑59 (MQ=255)
                                                                                                    aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCggc                                                                                                             <  1:1475761/60‑2 (MQ=255)
                                                                                                     aaaaTCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGt                            >  1:1766004/1‑139 (MQ=255)
                                                                                                       aaTCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCt                          <  2:1766004/139‑1 (MQ=255)
                                                                                                       aaTCAGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCT‑TGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCt                          <  1:356156/139‑1 (MQ=255)
                                                                                                           aGTTTGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                      <  2:441620/139‑1 (MQ=255)
                                                                                                               tGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg                                                                                               >  1:531183/1‑62 (MQ=255)
                                                                                                               tGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAg                                                                                               <  2:531183/62‑1 (MQ=255)
                                                                                                               tGCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat                  <  1:1014622/139‑1 (MQ=255)
                                                                                                                gCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCggccag                                                                                                          >  1:726175/1‑47 (MQ=255)
                                                                                                                gCCAGCGCCGCCTTCTGCGTCGTTACAATGGATTCGATTCCCCTCggccag                                                                                                          <  2:726175/51‑5 (MQ=255)
                                                                                                                          ccTTCTGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCa       >  2:305035/1‑139 (MQ=255)
                                                                                                                               tGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc        >  2:1608563/1‑133 (MQ=255)
                                                                                                                               tGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc        <  1:1608563/133‑1 (MQ=255)
                                                                                                                               tGCGTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg  <  2:720209/139‑1 (MQ=255)
                                                                                                                                  gTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc                                                                    <  2:939650/70‑1 (MQ=255)
                                                                                                                                  gTCGTTACAATGGATTCGATTCCCCTC‑GGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc                                                                    >  1:939650/1‑70 (MQ=255)
                                                                                                                                      |                                                                                                                                    
TAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCG  >  NC_000913/3815729‑3815995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A