Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F1 I1 R1 757 76.1 3598070 93.4% 3360597 108.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,810,304 G→A *160* (TAG→TAA)  coaD → pantetheine‑phosphate adenylyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,810,3040GA100.0% 248.4 / NA 76*160* (TAG→TAA) coaDpantetheine‑phosphate adenylyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (36/40);  total (36/40)

TGTGTTTCTGATGCCGTCGAAAGAGTGGTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCACAATCGGCGTACCGCACACCCGACACG  >  NC_000913/3810169‑3810425
                                                                                                                                       |                                                                                                                          
tgtgtTTCTGATGCCGTCGAAAGAGTGGTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTagcgtaacgt                                                                                                                         >  1:1329879/1‑139 (MQ=255)
    tttCTGATGCCGTCGAAAGAGTGGTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTAt                                                                                                                     >  2:906822/1‑139 (MQ=255)
      tCTGATGCCGTCGAAAGAGTGGTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGttt                                                                                                                       <  1:307181/135‑1 (MQ=255)
      tCTGATGCCGTCGAAAGAGTGGTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGttt                                                                                                                       >  2:307181/1‑135 (MQ=255)
       cTGATGCCGTCGAAAGAGTGGTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGcc                                                                                                                  <  2:901885/139‑1 (MQ=255)
        tGATGCCGTCGAAAGAGTGGTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCg                                                                                                                 <  1:612474/139‑1 (MQ=255)
          aTGCCGTCGAAAGAGTGGTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGa                                                                                                               <  2:1329879/139‑1 (MQ=255)
          aTGCCGTCGAAAGAGTGGTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGa                                                                                                               <  2:274945/139‑1 (MQ=255)
            gCCGTCGAAAGAGTGGTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑g                                                                                                            >  1:1760984/1‑139 (MQ=255)
                      gagTGGTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATc                                                                                                  <  1:869186/139‑1 (MQ=255)
                       agTGGTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGTCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCg                                                                                                                 >  1:1277590/1‑124 (MQ=255)
                       agTGGTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGTCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCg                                                                                                                 <  2:1277590/124‑1 (MQ=255)
                          ggTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATc                                                                                                  >  1:1218782/1‑135 (MQ=255)
                          ggTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGgc                                                                                              >  2:741905/1‑139 (MQ=255)
                          ggTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTGATGCCGGAT‑GGTATGCCATc                                                                                                  <  2:1218782/135‑1 (MQ=255)
                            tCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGgcgc                                                                                            >  1:13063/1‑139 (MQ=255)
                                   tctcTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGaa                                                                                     <  1:605686/139‑1 (MQ=255)
                                     tctTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAAtt                                                                                   <  1:741905/139‑1 (MQ=255)
                                         cATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAAt                                                                                    <  2:535379/134‑1 (MQ=255)
                                         cATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAAt                                                                                    >  1:535379/1‑134 (MQ=255)
                                            cGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGt                                                                                                          >  1:841775/1‑109 (MQ=255)
                                            cGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGt                                                                                                          <  2:841775/109‑1 (MQ=255)
                                                 gTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATg                                                                                                                    <  2:615747/95‑1 (MQ=255)
                                                 gTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATg                                                                                                                    >  1:615747/1‑95 (MQ=255)
                                                    aaaGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAAtt                                                                                   <  2:1786961/124‑1 (MQ=255)
                                                    aaaGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAAtt                                                                                   >  1:1786961/1‑124 (MQ=255)
                                                    aaaGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGcc                                                                    <  2:1760984/139‑1 (MQ=255)
                                                      agagGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGa                                                                  <  2:15759/139‑1 (MQ=255)
                                                           tGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGgcg                                                                                             >  2:1537043/1‑107 (MQ=255)
                                                           tGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGgcg                                                                                             <  1:1537043/107‑1 (MQ=255)
                                                            ggCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGa                                                                                                               >  2:1601868/1‑89 (MQ=255)
                                                            ggCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGa                                                                                                               <  1:1601868/89‑1 (MQ=255)
                                                            ggCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCg                                                                                                <  1:1067340/103‑1 (MQ=255)
                                                            ggCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCg                                                                                                >  2:1067340/1‑103 (MQ=255)
                                                            ggCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTgg                                                                           <  2:742143/124‑1 (MQ=255)
                                                            ggCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTgg                                                                           >  1:742143/1‑124 (MQ=255)
                                                                  ccATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGcc                                                                                                                  <  2:1636346/80‑1 (MQ=255)
                                                                  ccATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGcc                                                                                                                  >  1:1636346/1‑80 (MQ=255)
                                                                       aGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCg                                                 <  1:906822/139‑1 (MQ=255)
                                                                       aGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCg                                                 <  2:13063/139‑1 (MQ=255)
                                                                       aGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCg                                                 <  1:1072533/139‑1 (MQ=255)
                                                                             aTGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAAtt                                                                                   >  2:780834/1‑99 (MQ=255)
                                                                             aTGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAAtt                                                                                   <  1:780834/99‑1 (MQ=255)
                                                                             aTGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgcgc                                           >  2:267688/1‑139 (MQ=255)
                                                                              tGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATa                                                             >  2:500731/1‑120 (MQ=255)
                                                                              tGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATa                                                             <  1:500731/120‑1 (MQ=255)
                                                                               gTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgc                                             >  1:1654287/1‑135 (MQ=255)
                                                                               gTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgc                                             <  2:1654287/135‑1 (MQ=255)
                                                                                 cACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGt                                       <  2:663092/139‑1 (MQ=255)
                                                                                   gccATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCg                                                                                                                 >  1:1120084/2‑64 (MQ=255)
                                                                                   cccATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCg                                                                                                                 <  2:1120084/64‑1 (MQ=255)
                                                                                   cccATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGttt                                     >  2:918021/1‑139 (MQ=255)
                                                                                        ttCCTGCCGGAGAATGTCCATCAGTCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgcgc                                           >  1:1218121/1‑128 (MQ=255)
                                                                                        ttCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAAt                                                                                    <  1:402016/87‑1 (MQ=255)
                                                                                        ttCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAAt                                                                                    >  2:402016/1‑87 (MQ=255)
                                                                                        ttCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgcgc                                           <  2:1218121/128‑1 (MQ=255)
                                                                                              ccGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGaa                                                                                     <  2:883066/80‑1 (MQ=255)
                                                                                              ccGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGaa                                                                                     >  1:883066/1‑80 (MQ=255)
                                                                                                 gagaATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAt                                                                                                              >  2:1100933/1‑53 (MQ=255)
                                                                                                 gagaATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAt                                                                                                              <  1:1100933/53‑1 (MQ=255)
                                                                                                 gagaATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAAt                                                                                    <  1:3835/78‑1 (MQ=255)
                                                                                                 gagaATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAAt                                                                                    >  2:3835/1‑78 (MQ=255)
                                                                                                  agaATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGATGGGTATGCCATCCGGCGCGCATGAATTACTTCTGACACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCACAATCg                       >  1:116705/1‑139 (MQ=255)
                                                                                                        tCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCa                                                                                         >  1:1294754/1‑66 (MQ=255)
                                                                                                        tCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCa                                                                                         <  2:1294754/66‑1 (MQ=255)
                                                                                                        tCCATCAGGCGCTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATCCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCACAATCGGCGTAcc                >  2:526155/1‑139 (MQ=255)
                                                                                                                gcgcTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGaa                                                                                     >  2:593490/1‑62 (MQ=255)
                                                                                                                gcgcTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGaa                                                                                     <  1:593490/62‑1 (MQ=255)
                                                                                                                gcgcTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTg                                                     <  2:1416239/94‑1 (MQ=255)
                                                                                                                gcgcTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTg                                                     >  1:1416239/1‑94 (MQ=255)
                                                                                                                gcgcTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCACAATCGGCGTACCGCACAccc        >  1:1561266/1‑139 (MQ=255)
                                                                                                                  gcTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgc                                             >  1:1483527/1‑100 (MQ=255)
                                                                                                                  gcTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgc                                             <  2:1483527/100‑1 (MQ=255)
                                                                                                                   cTGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCACAATCGGCGTACCGCACACCCGac     >  1:1054498/1‑139 (MQ=255)
                                                                                                                    tGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCACAATCGGCGTACCGCACACCCGaca    <  2:1678077/139‑1 (MQ=255)
                                                                                                                    tGATGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCACAATCGGCGTACCGCACACCCGaca    <  2:987088/139‑1 (MQ=255)
                                                                                                                      aTGGCGAAGTTAGCGTAACGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCACAATCGGCGTACCGCACACCCGACACg  >  1:1014218/1‑139 (MQ=255)
                                                                                                                                       |                                                                                                                          
TGTGTTTCTGATGCCGTCGAAAGAGTGGTCGTTTATCTCTTCATCGTTGGTGAAAGAGGTGGCGCGCCATCAGGGCGATGTCACCCATTTCCTGCCGGAGAATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGAT‑GGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCACAATCGGCGTACCGCACACCCGACACG  >  NC_000913/3810169‑3810425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A