Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	773	79.9	4112934	92.2%	3792125	104.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	NC_000913	3,240,984	(G)_7→10	coding (1041/1245 nt)	sstT →	sodium:serine/threonine symporter

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3240977	4 (0.050)	65 (0.810) +GGG	43/186	0.4	94.2%	coding (1034/1245 nt)	sstT	sodium:serine/threonine symporter
*	?	NC_000913	3240978 =	4 (0.050)	65 (0.810) +GGG	43/186	0.4	94.2%	coding (1035/1245 nt)	sstT	sodium:serine/threonine symporter

GGCGGGCGCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3240843‑3240977

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGAAACCGCGCTGAACT  >  NC_000913/3240978‑3241108

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GGCGGGCGCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGG                                                                                                                                    >  2:1582075/1‑139

 GCGGGCGCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGG                                                                                                                                   >  1:47460/1‑139

 GCGGGCGCAACAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGG                                                                                                                                   >  1:1164736/1‑139

     GCGCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGG                                                                                                                               <  2:712742/139‑1

     GCGCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGG                                                                                                                               <  2:47460/139‑1

         AGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGGTCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCT                                                                                                                           <  1:563580/139‑1

         AGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCT                                                                                                                           >  2:1878435/1‑139

                        CGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCA                                                                                                            <  2:1164736/139‑1

                        CGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCA                                                                                                            <  1:1878435/139‑1

                          TGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACT                                                                                                          >  1:998883/1‑139

                          TGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑GGGGGGGGGTCTCTGCTGCTGATCCCACTG                                                                                                         >  1:1954721/1‑139

                           GTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTG                                                                                                         >  2:22946/1‑139

                            TTGACGCTGGCTGCGGTTTATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGGGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGG                                                                                                        <  2:386905/139‑1

                            TTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGG                                                                                                        <  2:336257/139‑1

                            TTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑GGGGGGGGGTCTCTGCTGCTGATCCCACTGGC                                                                                                       <  1:2010451/139‑1

                             tgcCGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATTTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGGGGGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGC                                                                                                       <  1:1610982/136‑1

                             agagtcaGGCTGCGGTTAATGCGGTGGGTATTCCGGTCGGTCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGC                                                                                                       <  1:1997875/132‑1

                              GACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGCGCTGCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTG                                                                                                         >  2:426859/1‑139

                               ACGCTTGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTTGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCT                                                                                                     <  2:998883/139‑1

                                 GCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGGGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGC                                                                                                       <  1:507776/135‑1

                                 GCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGC                                                                                                       >  2:507776/1‑135

                                  CTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTA                                                                                                  <  2:297801/139‑1

                                    GGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAAT                                                                                                <  1:1201918/139‑1

                                                TACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTTTGCTGCTGATCCCACTGGCCTGTAATATGTctgtctct                                                                                    >  2:1997875/1‑131

                                                     TGGGTATCCCGGTCTATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGGGGCTTCTCTGTGTGCCTGTGGGGCATCCGGCGTGGCGGGGGGGGGGTCACTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAA                                                                               <  1:856437/139‑1

                                                      GGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGt                                                                                                                              <  1:747282/91‑2

                                                      GGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGt                                                                                                                              >  2:747282/1‑90

                                                      GGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAAC                                                                              >  1:766200/1‑139

                                                      GGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGC                                                                                                       >  1:6889/1‑114

                                                      GGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGC                                                                                                       <  2:6889/114‑1

                                                      GGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCAACTGGCCTGTAATATGTTCGGTATTTCGAAC                                                                              >  1:851892/1‑139

                                                      GGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGT                                                                                                                             <  2:1427939/92‑1

                                                      GGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGT                                                                                                                             >  1:1427939/1‑92

                                                          ATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTG                                                                                                                     >  2:1003605/1‑96

                                                          ATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTG                                                                                                                     <  1:1003605/96‑1

                                                            TCCGGTCGATCTGTCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATC                                                                        >  2:276690/1‑139

                                                            TCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGTTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑GGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCG                                                                       <  2:187928/139‑1

                                                            TCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCT                                                                                                                   <  2:781728/96‑1

                                                            TCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCT                                                                                                                   >  1:781728/1‑96

                                                                 TCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGtctc                                                                                                                           <  2:768028/83‑5

                                                                 TCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGtctc                                                                                                                           >  1:768028/1‑79

                                                                        GCCCAGGGC‑‑‑GTTCTTGTTGGGCGGGGTGGCTTCTTTGTGTGCCTGTGGGGCACCCGGGGTGG‑GGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGG                                                           <  1:593632/139‑1

                                                                               GC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCG                                                     <  2:766200/139‑1

                                                                               GC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCG                                                                                 >  2:1995086/1‑111

                                                                               GC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCG                                                                                 <  1:1995086/111‑1

                                                                               GC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGC                                                                                                       >  1:1407108/1‑89

                                                                               GC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGGGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGC                                                                                                       <  2:1407108/89‑1

                                                                                      TGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGG                                                                                                        >  2:1950183/1‑84

                                                                                      TGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGG                                                                                                        <  1:1950183/84‑1

                                                                                            TGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCAACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTAT                                           <  2:851892/139‑1

                                                                                             GAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑GGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCA                                         <  2:1954721/139‑1

                                                                                             GAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑GGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGT                                                                                       <  2:1413318/93‑1

                                                                                             GAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑GGGGGGGGGTCTCTGCTGCTGAACCCACTGGCCTGTAATATGTTCGGT                                                                                       >  1:1413318/1‑93

                                                                                               GCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCAT                                        <  2:1885585/139‑1

                                                                                                CGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGG                                                                                                        >  1:1517467/1‑74

                                                                                                CGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGG                                                                                                        <  2:1517467/74‑1

                                                                                                  TGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑GGGGGGGGGTCTCTGCTGCTGATCCCACT                                                                                                          <  1:1308049/69‑1

                                                                                                  TGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑GGGGGGGGGTCTCTGCTGCTGATCCCACT                                                                                                          >  2:1308049/1‑69

                                                                                                    GTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCG                                   <  1:276690/139‑1

                                                                                                             CTGTGTGCCTGTGGCGCATCCGGCGTGGC‑GGGGGGGGGTCTCTGCTGCTGATCCCA                                                                                                            <  1:868528/56‑1

                                                                                                             CTGTGTGCCTGTGGCGCATCCGGCGTGGC‑GGGGGGGGGTCTCTGCTGCTGATCCCA                                                                                                            >  2:868528/1‑56

                                                                                                                  TGCCTGTGGCGCATCCGGCGTGGC‑GGGGGGGGGTCTCTGCTGCTGA                                                                                                                 <  2:284373/46‑1

                                                                                                                  TGCCTGTGGCGCATCCGGCGTGGC‑GGGGGGGGGTCTCTGCTGCTGA                                                                                                                 >  1:284373/1‑46

                                                                                                                       GTGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGA                <  1:426859/139‑1

                                                                                                                        TGGCGCATCCGGCGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGAA               >  2:1659599/1‑139

                                                                                                                                    CGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGA                                                                            >  1:1341681/1‑66

                                                                                                                                    CGTGGCGGGGGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGA                                                                            <  2:1341681/66‑1

                                                                                                                                    CGTGGC‑GGGGGGGGGTCACTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCAATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGAAACCGCGCTGAACT  >  1:1180209/1‑139

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GGCGGGCGCAGCAATCACTATTACCGTGTTGACGCTGGCTGCGGTTAATACGCTGGGTATTCCGGTCGATCTGCCCACGGC‑‑‑GCTGCTGTTGAGCGTGGTGGCTTCTCTGTGTGCCTGTGGCGCATCCGGCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3240843‑3240977

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGGGGTCTCTGCTGCTGATCCCACTGGCCTGTAATATGTTCGGTATTTCGAACGATATCGCCATGCAGGTGGTTGCCGTCGGCTTTATCATCGGCGTATTGCAGGACTCTTGCGAAACCGCGCTGAACT  >  NC_000913/3240978‑3241108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A