Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,864,243 |
C→T |
I115I (ATC→ATT) |
yidP → |
putative DNA‑binding transcriptional regulator YidP |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,864,243 | 0 | C | T | 100.0%
| 71.3
/ NA
| 21 | I115I (ATC→ATT) | yidP | putative DNA‑binding transcriptional regulator YidP |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (9/12); total (9/12) |
AACGGTCACCAGCCAGGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATCAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCC > NC_000913/3864165‑3864320
|
aaCGGTCACCAGCCAGGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTaa > 1:694361/1‑81 (MQ=255)
tCACCAGCCAGGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAg > 1:694379/1‑80 (MQ=255)
agccagGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATc < 1:694341/81‑1 (MQ=255)
gccagGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCt < 1:694342/81‑1 (MQ=255)
gccagGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCt < 2:694343/81‑1 (MQ=255)
ggTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACtt < 2:694344/81‑1 (MQ=255)
tGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTccc > 1:694371/1‑81 (MQ=255)
aTTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCg < 2:694345/80‑1 (MQ=255)
aTTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCg < 2:694346/80‑1 (MQ=255)
aaaTCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGcgttc < 1:694347/81‑1 (MQ=255)
tGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTtg > 1:694370/1‑81 (MQ=255)
gCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTtgt > 2:694380/1‑81 (MQ=255)
gcgcCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTgg > 2:694374/1‑79 (MQ=255)
cgcCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAg < 1:694348/81‑1 (MQ=255)
gcCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAgg > 1:694378/1‑81 (MQ=255)
gcCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAgg > 2:694377/1‑81 (MQ=255)
aTTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCt > 2:694372/1‑80 (MQ=255)
ggATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCt < 2:694349/81‑1 (MQ=255)
aTTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCtat < 1:694350/81‑1 (MQ=255)
aTTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCtat < 2:694351/81‑1 (MQ=255)
aaTTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGcc < 2:694352/81‑1 (MQ=255)
|
AACGGTCACCAGCCAGGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATCAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCC > NC_000913/3864165‑3864320
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
