Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,864,243 |
C→T |
I115I (ATC→ATT) |
yidP → |
putative DNA‑binding transcriptional regulator YidP |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,864,243 | 0 | C | T | 100.0%
| 111.0
/ NA
| 31 | I115I (ATC→ATT) | yidP | putative DNA‑binding transcriptional regulator YidP |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (12/19); total (12/19) |
ACGGTCACCAGCCAGGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATCAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCC > NC_000913/3864166‑3864320
|
aCGGTCACCAGCCAGGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAAc > 2:753622/1‑81 (MQ=255)
aCGGTCACCAGCCAGGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAAc < 2:753572/81‑1 (MQ=255)
ccagccagGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAg > 1:753620/1‑77 (MQ=255)
cagccagGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGAt < 1:753573/81‑1 (MQ=255)
agccagGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATc > 2:753616/1‑81 (MQ=255)
agccagGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATc < 2:753574/81‑1 (MQ=255)
gccagGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATc > 2:753618/1‑80 (MQ=255)
agGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACt < 2:753575/81‑1 (MQ=255)
ggTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACtt > 2:753614/1‑81 (MQ=255)
gATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCg > 1:753621/1‑81 (MQ=255)
aTTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCg < 1:753576/80‑1 (MQ=255)
aTTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGt < 1:753577/81‑1 (MQ=255)
aTTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGt < 1:753578/81‑1 (MQ=255)
tttttGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTc < 2:753579/81‑1 (MQ=255)
aaaTCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGcgtt < 2:753580/80‑1 (MQ=255)
aTCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGcgttcgt < 2:753581/81‑1 (MQ=255)
tCATGCCTGCGCCTCCGGACATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGcgttcgtt < 1:753582/81‑1 (MQ=255)
gCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTtgt > 1:753615/1‑81 (MQ=255)
ccTGCGCCTCCGGTCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTtgt < 2:753583/80‑1 (MQ=255)
cgcCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGa < 2:753584/79‑1 (MQ=255)
cTCCGGCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAgtg > 2:753628/1‑78 (MQ=255)
ggCCATTGCCAGCCAGTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAAcc > 2:753625/1‑81 (MQ=255)
ccagTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTgg > 1:753627/1‑80 (MQ=255)
ccagTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGa < 2:753585/81‑1 (MQ=255)
cagTTACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTgg > 2:753617/1‑79 (MQ=255)
ttACGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGAc < 2:753586/81‑1 (MQ=255)
cGGATTCAAATTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGTAAACCGCTGATGCTGGAAGACAg < 1:753587/80‑1 (MQ=255)
ttCAAATTAACGAGCAGATCTACTTCTCCCGACGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCtata < 2:753588/81‑1 (MQ=255)
aaaTTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATg < 1:753589/80‑1 (MQ=255)
aaTTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGcc < 1:753590/81‑1 (MQ=255)
aaTTAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGcc > 2:753629/1‑81 (MQ=255)
|
ACGGTCACCAGCCAGGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCCATTGCCAGCCAGTTACGGATTCAAATCAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCC > NC_000913/3864166‑3864320
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
