Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,559,878 |
C→T |
A41A (GCG→GCA) |
yjiG ← |
Gate family protein YjiG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,559,878 | 0 | C | T | 100.0%
| 136.7
/ NA
| 39 | A41A (GCG→GCA) | yjiG | Gate family protein YjiG |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (21/18); total (21/18) |
TTCACCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGC > NC_000913/4559800‑4559954
|
ttCACCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAgtgc > 2:840802/1‑81 (MQ=255)
cACCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAgtgc < 1:840742/79‑1 (MQ=255)
cACCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCt > 2:840793/1‑81 (MQ=255)
cACCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCt > 2:840796/1‑81 (MQ=255)
aCCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCt < 2:840745/80‑1 (MQ=255)
aCCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCt > 2:840794/1‑80 (MQ=255)
aCCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCt < 1:840744/80‑1 (MQ=255)
aCCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTg < 2:840743/81‑1 (MQ=255)
ccGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTg > 1:840806/1‑80 (MQ=255)
gggTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAat < 1:840746/81‑1 (MQ=255)
aTCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAAtgatga > 1:840801/1‑81 (MQ=255)
cccACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACaa < 2:840747/81‑1 (MQ=255)
cccACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACa > 1:840812/1‑80 (MQ=255)
ccACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACaaa < 2:840748/81‑1 (MQ=255)
cacaGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAAc < 1:840749/81‑1 (MQ=255)
aGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGcc < 1:840750/81‑1 (MQ=255)
tACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATcaccac > 2:840810/1‑81 (MQ=255)
gggTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGtt > 1:840807/1‑81 (MQ=255)
gTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTg > 2:840804/1‑81 (MQ=255)
acaGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGgcag > 1:840817/1‑81 (MQ=255)
gATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGcagcag < 2:840751/81‑1 (MQ=255)
tGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGtt < 1:840752/80‑1 (MQ=255)
tGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTg < 1:840753/81‑1 (MQ=255)
cccacccaGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTc < 1:840754/81‑1 (MQ=255)
acccaGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTg > 1:840830/1‑81 (MQ=255)
ccaGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGc > 2:840811/1‑81 (MQ=255)
ccaGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGc < 2:840756/81‑1 (MQ=255)
ccaGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGc < 1:840755/81‑1 (MQ=255)
gTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGa > 1:840818/1‑80 (MQ=255)
tCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGa > 1:840809/1‑79 (MQ=255)
gCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTa > 1:840823/1‑80 (MQ=255)
aGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAg > 1:840820/1‑81 (MQ=255)
aGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAg > 1:840814/1‑81 (MQ=255)
ggCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGc < 2:840758/81‑1 (MQ=255)
ggCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGc < 1:840757/81‑1 (MQ=255)
gCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGc > 2:840829/1‑80 (MQ=255)
tAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGgc < 1:840759/81‑1 (MQ=255)
aTTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGgcgc > 2:840828/1‑81 (MQ=255)
ttttCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGgcgcg > 1:840813/1‑81 (MQ=255)
cAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGgcgcgcgc < 1:840760/80‑1 (MQ=255)
cAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGgcgcgcgc > 2:840819/1‑80 (MQ=255)
|
TTCACCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGC > NC_000913/4559800‑4559954
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
