Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,559,878 |
C→T |
A41A (GCG→GCA) |
yjiG ← |
Gate family protein YjiG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,559,878 | 0 | C | T | 100.0%
| 138.9
/ NA
| 38 | A41A (GCG→GCA) | yjiG | Gate family protein YjiG |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (20/18); total (20/18) |
CACCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGC > NC_000913/4559802‑4559954
|
cACCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAgtgc < 1:917446/79‑1 (MQ=255)
cACCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCt > 2:917489/1‑81 (MQ=255)
aCCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCt < 1:917447/80‑1 (MQ=255)
cGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGaa > 1:917504/1‑81 (MQ=255)
tAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAatgat > 1:917500/1‑81 (MQ=255)
cccACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACaa < 1:917448/81‑1 (MQ=255)
cacaGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAAc < 1:917449/81‑1 (MQ=255)
caGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGc < 2:917450/81‑1 (MQ=255)
aGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGc > 2:917496/1‑80 (MQ=255)
aGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGc > 1:917490/1‑80 (MQ=255)
cgcCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCAt > 1:917503/1‑81 (MQ=255)
gcCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCAt > 2:917505/1‑80 (MQ=255)
cATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATcac < 1:917451/81‑1 (MQ=255)
cATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATcac < 1:917452/81‑1 (MQ=255)
aTTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATcacc < 2:917453/81‑1 (MQ=255)
aTTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATcac > 2:917509/1‑80 (MQ=255)
aCGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACg > 1:917454/1‑81 (MQ=255)
ggTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGttt < 1:917455/81‑1 (MQ=255)
ggTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGttt > 2:917494/1‑81 (MQ=255)
gTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTg > 2:917492/1‑81 (MQ=255)
ttCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTgg > 1:917510/1‑81 (MQ=255)
atatGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAgg > 2:917495/1‑81 (MQ=255)
tatGCCCCACCCAGTCGGGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGt < 2:917456/81‑1 (MQ=255)
cccacccaGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTc < 1:917458/81‑1 (MQ=255)
cccacccaGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTc < 2:917457/81‑1 (MQ=255)
acccaGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTg > 2:917493/1‑81 (MQ=255)
acccaGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTg < 1:917459/81‑1 (MQ=255)
ccaGTCGAGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGc < 2:917460/81‑1 (MQ=255)
aGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGt > 1:917506/1‑80 (MQ=255)
aGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTa < 2:917461/81‑1 (MQ=255)
aGCAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTa < 2:917462/81‑1 (MQ=255)
cAGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTaaa < 1:917463/81‑1 (MQ=255)
aGGCCGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAg > 1:917507/1‑81 (MQ=255)
ccGGTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCa > 1:917501/1‑81 (MQ=255)
ggTAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACg > 1:917514/1‑81 (MQ=255)
tAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGgc < 2:917464/81‑1 (MQ=255)
tAATTTTCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGgc < 1:917465/81‑1 (MQ=255)
tttCAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGgcgcgc > 1:917498/1‑81 (MQ=255)
cAGTGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGgcgcgcgc > 2:917512/1‑80 (MQ=255)
|
CACCGGGTAATCCCCACAGCGCCATTACGGGTTCACAGATATGCCCCACCCAGTCGAGCAGGCCGGTAATTTTCAGCGCCTGAATGATGACAAACGCCATCACCACGTTTGGCAGCAGGTTGGTCGTGGCGATAGTAAAGCCACGGCGCGCGC > NC_000913/4559802‑4559954
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
