Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F60 I1 R1 25 81.9 2792568 99.0% 2764642 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,847,546 C→G G360A (GGC→GCC)  uhpC ← inner membrane protein sensing glucose‑6‑phosphate

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,847,5460CG100.0% 282.2 / NA 72G360A (GGC→GCC) uhpCinner membrane protein sensing glucose‑6‑phosphate
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (38/34);  total (38/34)

TATCGAGTACTTTCGCCAGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCATCGGCCCTCGGTTGCCGT  >  NC_000913/3847409‑3847681
                                                                                                                                         |                                                                                                                                       
tATCGAGTACTTTCGCCAGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCa                                                                                                                                       >  1:950433/1‑140 (MQ=255)
tATCGAGTACTTTCGCCAGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCa                                                                                                                                       >  2:1175311/1‑140 (MQ=255)
   cGAGTACTTTCGCCAGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAg                                                                                                                                    >  1:604765/1‑140 (MQ=255)
   cGAGTACTTTCGCCAGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAg                                                                                                                                    >  1:109531/1‑140 (MQ=255)
     aGTACTTTCGCCAGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGAc                                                                                                                                  >  2:668754/1‑140 (MQ=255)
         cTTTCGCCAGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACaaaa                                                                                                                              >  1:781374/1‑140 (MQ=255)
          tttCGCCAGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACaaaaa                                                                                                                             >  1:1257444/1‑140 (MQ=255)
            tCGCCAGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACaaaaaaa                                                                                                                           >  2:24451/1‑140 (MQ=255)
             ccccggCGGCCAACCGACAGACGACGCCCCCAATTAAAAAATAAAGCCACCAACCCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACCCTCTCCCGCCGCCATACCGATTAACATCTGTGGCGCAAAGACAAAAAAAc                                                                                                                          <  2:984950/135‑1 (MQ=255)
              gCCAGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAACCCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAAcc                                                                                                                         <  1:308995/140‑1 (MQ=255)
              gCCAGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAAcc                                                                                                                         <  2:1148542/140‑1 (MQ=255)
              gCCAGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAAcc                                                                                                                         <  1:712415/140‑1 (MQ=255)
               ccAGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCa                                                                                                                        <  2:1050525/140‑1 (MQ=255)
                 aGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCaa                                                                                                                       >  2:295860/1‑139 (MQ=255)
                 aGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCaa                                                                                                                       <  1:295860/139‑1 (MQ=255)
                 aGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAAt                                                                                                                      <  1:1080226/140‑1 (MQ=255)
                     gCCAACCAGAAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTg                                                                                                                  <  1:169779/140‑1 (MQ=255)
                             gCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCa                                                                                                          >  1:1055807/1‑140 (MQ=255)
                                 gCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGtt                                                                                                      <  1:877295/140‑1 (MQ=255)
                                  cGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTg                                                                                                     >  1:814735/1‑140 (MQ=255)
                                   gACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGc                                                                                                    <  1:198926/140‑1 (MQ=255)
                                   gACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGc                                                                                                    <  2:604765/140‑1 (MQ=255)
                                   gACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGc                                                                                                    <  1:668754/140‑1 (MQ=255)
                                     cGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCt                                                                                                  <  2:15762/140‑1 (MQ=255)
                                             aaaaaGCAAACAAGCCGACAACCCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACg                                                                                          <  2:911199/137‑1 (MQ=255)
                                                aaGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACTCTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAg                                                                                       <  1:641362/140‑1 (MQ=255)
                                                aaGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAg                                                                                       <  2:950433/140‑1 (MQ=255)
                                                 aGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGc                                                                                      >  1:991166/1‑140 (MQ=255)
                                                  gCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTTAAGAAGCAGGTTGCCTGCATCACGTAGCt                                                                                     >  2:1058188/1‑140 (MQ=255)
                                                  gCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAg                                                                                       >  2:1306641/1‑138 (MQ=255)
                                                  gCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAg                                                                                       <  1:1306641/138‑1 (MQ=255)
                                                  gCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCt                                                                                     >  1:1026473/1‑140 (MQ=255)
                                                  gCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCt                                                                                     <  2:991166/140‑1 (MQ=255)
                                                   cAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTg                                                                                    >  1:1254190/1‑140 (MQ=255)
                                                      aCAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCa                                                                                 >  1:954521/1‑140 (MQ=255)
                                                        aaGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCaaa                                                                               >  2:683612/1‑140 (MQ=255)
                                                            cGACAACCCCCGTCCCCGCCCCTCCCGCCTCTTTGTGGGAACCCTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGc                                                                           <  2:954521/140‑1 (MQ=255)
                                                             gACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCa                                                                          >  2:1018784/1‑140 (MQ=255)
                                                             gACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCa                                                                          <  1:24451/140‑1 (MQ=255)
                                                              aCAACCCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCAt                                                                         <  2:619598/140‑1 (MQ=255)
                                                              aCAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCAt                                                                         <  1:683612/140‑1 (MQ=255)
                                                                     ccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGcc                                                                    >  1:1298483/1‑138 (MQ=255)
                                                                     ccGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGcc                                                                    <  2:1298483/138‑1 (MQ=255)
                                                                        tCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAgg                                                               >  1:866737/1‑140 (MQ=255)
                                                                        tCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAgg                                                               >  1:1214742/1‑140 (MQ=255)
                                                                            cgccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGc                                                           <  1:368207/140‑1 (MQ=255)
                                                                             gccCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGcc                                                          <  1:758903/140‑1 (MQ=255)
                                                                                ccTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGAc                                                       <  2:814735/140‑1 (MQ=255)
                                                                                   gccgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGAc                                                       <  2:1226090/137‑1 (MQ=255)
                                                                                   gccgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGAc                                                       >  1:1226090/1‑137 (MQ=255)
                                                                                   gccgccTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGa                                                    <  1:281925/140‑1 (MQ=255)
                                                                                         tctTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCaa                                              >  2:1002175/1‑140 (MQ=255)
                                                                                              gtgGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTc                                         >  2:1172996/1‑140 (MQ=255)
                                                                                                gggAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCcg                                       <  2:1257444/140‑1 (MQ=255)
                                                                                                     cacTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCggcggc                                  >  2:1081234/1‑140 (MQ=255)
                                                                                                     cacTCTGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCggcggc                                  <  1:1185419/140‑1 (MQ=255)
                                                                                                       ctctGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGa                                >  2:1378344/1‑140 (MQ=255)
                                                                                                        tctGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaa                               >  2:142608/1‑140 (MQ=255)
                                                                                                         ctGCCGCCGCCATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGaaa                              >  2:327925/1‑140 (MQ=255)
                                                                                                                   cATACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCa                    <  1:1182446/140‑1 (MQ=255)
                                                                                                                    aTACCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCAt                   <  1:933636/140‑1 (MQ=255)
                                                                                                                      aCCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCATCg                 >  2:812521/1‑140 (MQ=255)
                                                                                                                      aCCGATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCATCg                 <  1:1172996/140‑1 (MQ=255)
                                                                                                                         gATTAACATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCATCGGcc              <  2:1026473/140‑1 (MQ=255)
                                                                                                                             aaCATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCATCGGCCCTCg          >  1:609088/1‑140 (MQ=255)
                                                                                                                               cATCTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCATCGGCCCTCGGt        <  1:1002175/140‑1 (MQ=255)
                                                                                                                                  cTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCATCGGCCCTCGGTTGc     >  2:399346/1‑140 (MQ=255)
                                                                                                                                  cTGTGGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCATCGGCCCTCGGTTGc     >  2:769119/1‑140 (MQ=255)
                                                                                                                                    gtgGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCATCGGCTCTCGGTTGCCg   >  2:513948/1‑140 (MQ=255)
                                                                                                                                    gtgGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCATCGGCCCTCGGTTGCCg   >  2:1035473/1‑140 (MQ=255)
                                                                                                                                    gtgGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCATCGGCCCTCGGTTGCCg   >  1:107890/1‑140 (MQ=255)
                                                                                                                                     tgGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCATCGGCCCTCGGTTGCCGt  >  1:17517/1‑140 (MQ=255)
                                                                                                                                     tgGGGCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCATCGGCCCTCGGTTGCCGt  >  2:1009713/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
TATCGAGTACTTTCGCCAGCGGCCAACCAGCAAGCGACGCCCCCAGATAAGCAAACAAGCCGACAAACCCCGTCGCCGCCCCTGCCGCCTCTTTGTGGGAACACTCTGCCGCCGCCATACCGATTAACATCTGTGGGCCAAAGACAAAAAAACCAATGGTGAAGAAGCAGGTTGCCTGCATCACGTAGCTGGCAAATGGCATCAGCCACAGGGAGCCGACTGAAAGCAAAATTCCGGCGGCGAAAATCAAATTCATCGGCCCTCGGTTGCCGT  >  NC_000913/3847409‑3847681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A