Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F48 I1 R1	45	111.1	3780378	99.2%	3750134	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	209,615	G→T	intergenic (+35/‑64)	accA → / → ldcC	acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	209,615	0	G	T	100.0%	363.8 / NA	103	intergenic (+35/‑64)	accA/ldcC	acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (39/64); total (39/64)

Only 100 of 105 total aligned reads displayed.

CTGGCGGATCTGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGGCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGAGCCCATCAAAGAACTGGAGTCGG  >  NC_000913/209491‑209751

ctgGCGGATCTGGTCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGcc                                                                                                                           <  1:881037/140‑1 (MQ=255)

ctgGCGGATCTGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGcc                                                                                                                           <  2:1283640/140‑1 (MQ=255)

ctgGCGGATCTGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGcc                                                                                                                           <  2:1049672/140‑1 (MQ=255)

ctgGCGGATCTGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGcc                                                                                                                           <  2:870988/140‑1 (MQ=255)

atgGCGGATCTGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGcc                                                                                                                           <  2:1553470/139‑1 (MQ=255)

atgGCGGATCTGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGcc                                                                                                                           <  2:509427/139‑1 (MQ=255)

    gggATCTGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACgg                                                                                                                       <  2:804777/139‑1 (MQ=255)

     ggATCTGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGt                                                                                                                      <  2:975046/140‑1 (MQ=255)

     ggATCTGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCACTTTTTTATCGCCACGGt                                                                                                                      <  1:332675/140‑1 (MQ=255)

        tCTGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTg                                                                                                                   >  1:1882900/1‑140 (MQ=255)

          tGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAg                                                                                                                 <  2:1605026/140‑1 (MQ=255)

          tGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAg                                                                                                                 <  2:24794/140‑1 (MQ=255)

          tGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAg                                                                                                                 <  2:531381/140‑1 (MQ=255)

          tGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAg                                                                                                                 <  2:820563/140‑1 (MQ=255)

          tGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAg                                                                                                                 <  1:1463979/140‑1 (MQ=255)

          tGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAg                                                                                                                 <  1:1158235/140‑1 (MQ=255)

          tGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAg                                                                                                                 <  1:1419423/140‑1 (MQ=255)

           ggCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGc                                                                                                                <  2:1429659/140‑1 (MQ=255)

           ggCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGc                                                                                                                <  2:1144774/140‑1 (MQ=255)

              cGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAgg                                                                                                             <  2:1611626/140‑1 (MQ=255)

                aTCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAGGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCt                                                                                                           <  2:196880/140‑1 (MQ=255)

                aTCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCt                                                                                                           <  2:1788989/140‑1 (MQ=255)

                aTCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCt                                                                                                           <  1:957031/140‑1 (MQ=255)

                aTCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCt                                                                                                           <  1:534502/140‑1 (MQ=255)

                 tctcGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTa                                                                                                          <  2:921412/140‑1 (MQ=255)

                          gtTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTaagg                                                                                                 >  1:159183/1‑140 (MQ=255)

                           ttAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTaagga                                                                                                >  1:1224699/1‑140 (MQ=255)

                           ttAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTaagga                                                                                                >  1:1222723/1‑140 (MQ=255)

                           ttAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTaagga                                                                                                >  1:387724/1‑140 (MQ=255)

                           ttAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTaagga                                                                                                >  2:1173289/1‑140 (MQ=255)

                           ttAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTaagga                                                                                                >  2:651346/1‑140 (MQ=255)

                             aaGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTaaggaag                                                                                              >  2:1722877/1‑140 (MQ=255)

                               gCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCGCTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAaggaagga                                                                                            <  2:903652/140‑1 (MQ=255)

                               gCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAaggaagga                                                                                            <  2:1071982/140‑1 (MQ=255)

                                   tGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGAtttt                                                                                        >  2:1304871/1‑140 (MQ=255)

                                    gAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTc                                                                                       <  2:915464/140‑1 (MQ=255)

                                     aaGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAGAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTcc                                                                                      >  1:1287897/1‑140 (MQ=255)

                                     aaGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTcc                                                                                      >  2:168694/1‑140 (MQ=255)

                                     aaGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTcc                                                                                      >  1:1050964/1‑140 (MQ=255)

                                     aaGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTcc                                                                                      >  1:1196189/1‑140 (MQ=255)

                                       gATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCag                                                                                    <  2:1623449/140‑1 (MQ=255)

                                        aTTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCagg                                                                                   >  1:1827699/1‑140 (MQ=255)

                                          ttAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCaggag                                                                                 >  1:754865/1‑140 (MQ=255)

                                          ttAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCaggag                                                                                 >  2:1457787/1‑140 (MQ=255)

                                           tAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCaggagg                                                                                <  1:818403/140‑1 (MQ=255)

                                           tAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCaggagg                                                                                <  2:1181115/140‑1 (MQ=255)

                                             aaaaaTCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGaa                                                                              <  2:1413355/140‑1 (MQ=255)

                                                 aTCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCTAGGAGGAAcaca                                                                          <  2:754865/140‑1 (MQ=255)

                                                     tcgtTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGaa                                                                      >  2:956505/1‑140 (MQ=255)

                                                       gtTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAAca                                                                    <  2:625611/140‑1 (MQ=255)

                                                          aTCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAAcatca                                                                 <  1:1373696/140‑1 (MQ=255)

                                                            cAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCAtt                                                               <  2:1882900/140‑1 (MQ=255)

                                                            cAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCAtt                                                               <  1:287338/140‑1 (MQ=255)

                                                              gcgcCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGc                                                             <  2:1224699/140‑1 (MQ=255)

                                                              gcgcCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGc                                                             <  2:1753995/140‑1 (MQ=255)

                                                              gcgcCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGc                                                             <  2:1050964/140‑1 (MQ=255)

                                                              gcgcCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGc                                                             <  1:705541/140‑1 (MQ=255)

                                                              gcgcCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGc                                                             <  1:613296/140‑1 (MQ=255)

                                                              gcgcCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGc                                                             <  1:1813038/140‑1 (MQ=255)

                                                               cgcCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGcc                                                            >  1:1713762/1‑140 (MQ=255)

                                                                     atgaGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTATTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATg                                                      >  2:219578/1‑140 (MQ=255)

                                                                      tgaGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATgg                                                     <  2:1222723/140‑1 (MQ=255)

                                                                          cTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGAcc                                                 >  1:398054/1‑140 (MQ=255)

                                                                            aCGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGc                                               >  1:760602/1‑140 (MQ=255)

                                                                               gTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGAcc                                                 >  1:174448/1‑135 (MQ=255)

                                                                               gTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGAcc                                                 <  2:174448/135‑1 (MQ=255)

                                                                               gTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCAtt                                            >  2:1720889/1‑139 (MQ=255)

                                                                                 tACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGc                                          <  2:900725/140‑1 (MQ=255)

                                                                                 tACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGc                                          <  1:1785734/140‑1 (MQ=255)

                                                                                 tACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGc                                          <  1:168694/140‑1 (MQ=255)

                                                                                 tACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGc                                          <  2:870907/140‑1 (MQ=255)

                                                                                 tACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGc                                          <  2:1762122/140‑1 (MQ=255)

                                                                                 tACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGc                                          <  1:1502532/140‑1 (MQ=255)

                                                                                   cgcgTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGt                                        >  1:1550935/1‑140 (MQ=255)

                                                                                   cgcgTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGt                                        >  2:68080/1‑140 (MQ=255)

                                                                                   cgcgTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGt                                        >  2:340136/1‑140 (MQ=255)

                                                                                   cgcgTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGt                                        >  2:1347125/1‑140 (MQ=255)

                                                                                    gcgTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTc                                       >  2:1187400/1‑140 (MQ=255)

                                                                                    gcgTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTc                                       <  1:1278989/140‑1 (MQ=255)

                                                                                      gTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCtt                                     <  1:956505/140‑1 (MQ=255)

                                                                                       tAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGc                                          <  2:1463205/134‑1 (MQ=255)

                                                                                       tAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGc                                          >  1:1463205/1‑134 (MQ=255)

                                                                                       tAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCttt                                    >  2:775248/1‑140 (MQ=255)

                                                                                         aTTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTta                                  >  1:792810/1‑140 (MQ=255)

                                                                                         aTTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTta                                  >  1:1881050/1‑140 (MQ=255)

                                                                                          ttCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTtat                                 >  1:1129732/1‑140 (MQ=255)

                                                                                          ttCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTtat                                 >  1:504071/1‑140 (MQ=255)

                                                                                                aaaGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGAt                           <  1:856271/140‑1 (MQ=255)

                                                                                                  aGTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGa                         <  1:1347125/140‑1 (MQ=255)

                                                                                                   gTTCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGAg                        <  2:1196189/140‑1 (MQ=255)

                                                                                                     tCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATTATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGAGcc                      <  2:299154/140‑1 (MQ=255)

                                                                                                     tCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGAGcc                      <  2:792810/140‑1 (MQ=255)

                                                                                                     tCTGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGAGcc                      <  2:1881050/140‑1 (MQ=255)

                                                                                                       tGAAAAAGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGAGCCCa                    >  2:720091/1‑140 (MQ=255)

                                                                                                          aaaaGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGAGCCCATCa                 <  2:1827699/140‑1 (MQ=255)

                                                                                                          aaaaGGGTCACTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGAGCCCATCa                 <  2:159183/140‑1 (MQ=255)

                                                                                                                   aCTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGAGCCCATCAAAGAACTgg        >  1:1710221/1‑140 (MQ=255)

                                                                                                                    cTTCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGAGCCCATCAAAGAACTGGa       >  2:831457/1‑140 (MQ=255)

                                                                                                                     ttCGGTGTCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGAGCCCATCAAAGAACTGGAg      <  2:1287897/140‑1 (MQ=255)

                                                                                                                         gtgtCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGAGCCCATCAAAGAACTGGAGTCgg  >  1:47364/1‑140 (MQ=255)

CTGGCGGATCTGGCCGATCTCGACGTGTTAAGCACTGAAGATTTAAAAAATCGTCGTTATCAGCGCCTGATGAGCTACGGTTACGCGTAATTCGCAAAAGTTCTGAAAAAGGGTCACTTCGGTGGCCCTTTTTTATCGCCACGGTTTGAGCAGGCTATGATTAAGGAAGGATTTTCCAGGAGGAACACATGAACATCATTGCCATTATGGGACCGCATGGCGTCTTTTATAAAGATGAGCCCATCAAAGAACTGGAGTCGG  >  NC_000913/209491‑209751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A