Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F48 I1 R1	45	111.1	3780378	99.2%	3750134	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	344,676	C→T	Y167Y (TAC→TAT)	yahL →	uncharacterized protein YahL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	344,676	0	C	T	99.4%	619.4 / ‑4.3	172	Y167Y (TAC→TAT)	yahL	uncharacterized protein YahL
Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (82/88); total (84/88)
Fisher's exact test for biased strand distribution p-value = 4.85e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01

Only 100 of 173 total aligned reads displayed.

TTTGGGTATATGACCAGGATGATGCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATACCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGATTATTATTACA  >  NC_000913/344540‑344810

 ttGGGTATATGACCAGGATGATGCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCata                                                                                                                                    <  1:1021893/140‑1 (MQ=255)

    ggTATATGACCAGGATGATGCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGc                                                                                                                                 >  2:212898/1‑140 (MQ=255)

          tGACCAGGATGATGCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGc                                                                                                                           >  1:1029111/1‑140 (MQ=255)

          tGACCAGGATGATGCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGc                                                                                                                           >  1:1304200/1‑140 (MQ=255)

              cAGGATGATGCGTTTCTTGATATTAAAGCAAACGTGCGGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGGGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTgag                                                                                                                       >  2:293949/1‑140 (MQ=255)

                ggATGATGCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGaa                                                                                                                     >  1:1377986/1‑140 (MQ=255)

                  atgatgCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAAtt                                                                                                                   <  1:965419/140‑1 (MQ=255)

                  atgatgCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAAtt                                                                                                                   >  1:629875/1‑140 (MQ=255)

                     atgCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTc                                                                                                                >  2:1687569/1‑140 (MQ=255)

                      tgCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTcc                                                                                                               >  1:731490/1‑140 (MQ=255)

                      tgCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTcc                                                                                                               >  2:283773/1‑140 (MQ=255)

                      tgCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTcc                                                                                                               >  2:1852576/1‑140 (MQ=255)

                      tgCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTcc                                                                                                               >  1:266140/1‑140 (MQ=255)

                      tgCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTcc                                                                                                               >  1:210069/1‑140 (MQ=255)

                      tgCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTcc                                                                                                               >  2:121154/1‑140 (MQ=255)

                      tgCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTcc                                                                                                               >  2:92384/1‑140 (MQ=255)

                       gCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTccc                                                                                                              <  2:335009/140‑1 (MQ=255)

                       gCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTccc                                                                                                              <  2:1065420/140‑1 (MQ=255)

                         gTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTa                                                                                                            <  1:1726571/140‑1 (MQ=255)

                         gTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTa                                                                                                            <  2:207079/140‑1 (MQ=255)

                         gTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTa                                                                                                            <  1:981258/140‑1 (MQ=255)

                         gTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTa                                                                                                            <  1:244833/140‑1 (MQ=255)

                         gTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTa                                                                                                            <  2:590009/140‑1 (MQ=255)

                           ttCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGTAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTaaa                                                                                                          >  1:1560971/1‑140 (MQ=255)

                           ttCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTaaa                                                                                                          <  2:42494/140‑1 (MQ=255)

                           ttCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTaaa                                                                                                          <  1:500461/140‑1 (MQ=255)

                               tGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGa                                                                                                      <  2:1444930/140‑1 (MQ=255)

                                gATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGaa                                                                                                     <  2:1304200/140‑1 (MQ=255)

                                 atatTAAAGCAAACGTGCAGGCTGGACGGTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGaaa                                                                                                    <  2:1767005/140‑1 (MQ=255)

                                 atatTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGaaa                                                                                                    <  1:1183290/140‑1 (MQ=255)

                                 atatTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGaaa                                                                                                    <  2:972150/140‑1 (MQ=255)

                                 atatTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGaaa                                                                                                    <  1:842789/140‑1 (MQ=255)

                                 atatTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGaaa                                                                                                    >  1:1234181/1‑140 (MQ=255)

                                 atatTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGaaa                                                                                                    <  1:1321206/140‑1 (MQ=255)

                                 atatTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGaaa                                                                                                    <  1:1323915/140‑1 (MQ=255)

                                 atatTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGaaa                                                                                                    <  2:1362975/140‑1 (MQ=255)

                                 atatTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGaaa                                                                                                    <  2:305002/140‑1 (MQ=255)

                                 atatTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGaaa                                                                                                    <  1:1425927/140‑1 (MQ=255)

                                 ataataAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGaaa                                                                                                    <  2:1003432/140‑1 (MQ=255)

                                  tatTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAag                                                                                                   >  2:1605523/1‑140 (MQ=255)

                                        aGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCGTAAAGGGAAAGAGTGTa                                                                                             <  1:283773/140‑1 (MQ=255)

                                        aGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTa                                                                                             <  2:91766/140‑1 (MQ=255)

                                            aaCGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCa                                                                                         >  1:1518685/1‑140 (MQ=255)

                                            aaCGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCa                                                                                         >  1:216816/1‑140 (MQ=255)

                                            aaCGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCa                                                                                         >  2:1326987/1‑140 (MQ=255)

                                              agTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCAtg                                                                                       <  2:523347/139‑1 (MQ=255)

                                                    ggCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGaaa                                                                                 >  2:890352/1‑140 (MQ=255)

                                                         gACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATgg                                                                            >  2:1492418/1‑140 (MQ=255)

                                                          gcGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGATGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGc                                                                           <  1:1687569/139‑1 (MQ=255)

                                                               ttACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTcgc                                                                      >  1:788737/1‑140 (MQ=255)

                                                               ttACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTcgc                                                                      >  2:93131/1‑140 (MQ=255)

                                                                     ggCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATg                                                                >  1:534769/1‑140 (MQ=255)

                                                                     ggCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATg                                                                <  1:1492418/140‑1 (MQ=255)

                                                                      gCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATgt                                                               >  2:112409/1‑140 (MQ=255)

                                                                        ttAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATgtcg                                                             >  1:1168773/1‑140 (MQ=255)

                                                                         tAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATgtcgt                                                            <  2:1506339/140‑1 (MQ=255)

                                                                          aaGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATgtcgtc                                                           >  1:386092/1‑140 (MQ=255)

                                                                           aGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCt                                                          <  1:1034661/140‑1 (MQ=255)

                                                                                ttAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTcc                                                     <  1:321/140‑1 (MQ=255)

                                                                                   gTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGga                                                  <  1:91955/140‑1 (MQ=255)

                                                                                    tGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGgag                                                 >  1:603276/1‑140 (MQ=255)

                                                                                    tGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGgag                                                 <  1:112409/140‑1 (MQ=255)

                                                                                    tGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGgag                                                 >  1:583612/1‑140 (MQ=255)

                                                                                       ggTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGagaca                                              >  1:1355826/2‑140 (MQ=255)

                                                                                       aGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGagaca                                              >  1:1708773/1‑140 (MQ=255)

                                                                                         tttATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGagacaga                                            >  1:1093187/1‑140 (MQ=255)

                                                                                            aTCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCGCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGAcgc                                         <  2:1560971/140‑1 (MQ=255)

                                                                                            aTCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGAcgc                                         >  2:1407851/1‑140 (MQ=255)

                                                                                                 ttCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCa                                    <  2:266140/140‑1 (MQ=255)

                                                                                                  tCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTACTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCAt                                   >  1:1123063/1‑140 (MQ=255)

                                                                                                   cAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCAtt                                  >  2:786546/1‑140 (MQ=255)

                                                                                                      tGCGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAg                               >  1:1162706/1‑140 (MQ=255)

                                                                                                        cGAACAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCa                             <  1:1798371/140‑1 (MQ=255)

                                                                                                          aaCAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAgg                           >  1:1760327/1‑140 (MQ=255)

                                                                                                           aCAGATTGCAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCTTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAgac                          >  2:247993/1‑138 (MQ=255)

                                                                                                                   cAAATGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTgcgc                  <  1:323762/140‑1 (MQ=255)

                                                                                                                    aaaTGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCa                 <  2:603276/140‑1 (MQ=255)

                                                                                                                    aaaTGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCa                 <  1:93131/140‑1 (MQ=255)

                                                                                                                    aaaTGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCa                 <  1:874280/140‑1 (MQ=255)

                                                                                                                    aaaTGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCa                 <  1:777336/140‑1 (MQ=255)

                                                                                                                    aaaTGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCa                 <  1:513971/140‑1 (MQ=255)

                                                                                                                    aaaTGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCa                 <  1:1407851/140‑1 (MQ=255)

                                                                                                                    aaaTGTATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCa                 <  1:247993/140‑1 (MQ=255)

                                                                                                                    aaaTGTATTCTTCTTGAATATCATATGCCTTTACTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCa                 <  2:1123063/140‑1 (MQ=255)

                                                                                                                         tATTCTTCTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGat            <  2:386092/140‑1 (MQ=255)

                                                                                                                         aaatcttcaTGAATAGCATATACCTTTGCTGAGAATTTTCCATAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTGGCGAAATGTCGTCTTTTCCGGAGACAGACGCGCCCATTAAGCAGACGCTTGCGCATGGat            <  2:1423812/137‑1 (MQ=255)

                                                                                                                           ttcttcTTGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGatta          >  2:463559/1‑140 (MQ=255)

                                                                                                                             cttcttGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGattatt        >  1:378939/1‑140 (MQ=255)

                                                                                                                             cttcttGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGattatt        >  2:637444/1‑140 (MQ=255)

                                                                                                                              ttcttGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGattattt       >  2:626671/1‑139 (MQ=255)

                                                                                                                                cttGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCa                 <  2:766232/128‑1 (MQ=255)

                                                                                                                                cttGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGattattatt     <  2:1029647/140‑1 (MQ=255)

                                                                                                                                cttGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGattattatt     >  2:271176/1‑140 (MQ=255)

                                                                                                                                cttGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGattattatt     >  2:1633627/1‑140 (MQ=255)

                                                                                                                                cttGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGattattatt     >  1:980227/1‑140 (MQ=255)

                                                                                                                                cttGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGattattatt     >  1:1664505/1‑140 (MQ=255)

                                                                                                                                 ttGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGAttattatta    <  2:1162706/140‑1 (MQ=255)

                                                                                                                                  tGAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGATTATTATTac   >  2:992826/1‑140 (MQ=255)

                                                                                                                                   gAATATCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGATTATTATTaca  <  1:117003/140‑1 (MQ=255)

                                                                                                                                   gAATACCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGATTATTATTaca  >  2:1875772/1‑140 (MQ=255)

TTTGGGTATATGACCAGGATGATGCGTTTCTTGATATTAAAGCAAACGTGCAGGCTGGACGCTTTACCGGGCTTAAGAAATTAGTGCAGTTTATCGATTCAGTGCGAACAGATTGCAAATGTATTCTTCTTGAATACCATATGCCTTTGCTGAGAATTTTCCCTAAAGGGAAAGAGTGTATGCATGTGGAAAAATGGCTTCGCGAAATGTCGTCTATTCCGGAGACAGACGCGCCCATTAAGCAGGCGCTTGCGCATGGATTATTATTACA  >  NC_000913/344540‑344810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A