Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F48 I1 R1	62	93.4	3176452	99.2%	3151040	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	345,634	C→G	I77M (ATC→ATG)	yahM →	uncharacterized protein YahM

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	345,634	0	C	G	100.0%	465.2 / NA	118	I77M (ATC→ATG)	yahM	uncharacterized protein YahM
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (61/57); total (61/57)

Only 100 of 120 total aligned reads displayed.

TGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATCAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAACGCGTTGCATACGCCCATAAGCACG  >  NC_000913/345497‑345767

  gggCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGt                                                                                                                                   <  1:1022833/140‑1 (MQ=255)

  gggCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGt                                                                                                                                   <  2:1158952/140‑1 (MQ=255)

   ggCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGtt                                                                                                                                  >  1:392194/1‑140 (MQ=255)

   ggCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGtt                                                                                                                                  >  2:773970/1‑140 (MQ=255)

   ggCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGtt                                                                                                                                  >  1:1552923/1‑140 (MQ=255)

       gACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGAtt                                                                                                                              <  1:137780/140‑1 (MQ=255)

        aCCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTa                                                                                                                             >  1:1124583/1‑140 (MQ=255)

          cAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTAct                                                                                                                           >  2:676679/1‑139 (MQ=255)

           aaTGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGt                                                                                                                          <  2:602628/140‑1 (MQ=255)

            aTGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTa                                                                                                                         <  1:216779/140‑1 (MQ=255)

            aTGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTa                                                                                                                         <  1:730915/140‑1 (MQ=255)

            aTGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTa                                                                                                                         <  2:1270318/140‑1 (MQ=255)

               aaaaaaGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTagag                                                                                                                      <  2:392194/140‑1 (MQ=255)

               aaaaaaGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTagag                                                                                                                      <  2:854848/140‑1 (MQ=255)

               aaaaaaGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTagag                                                                                                                      <  1:29694/140‑1 (MQ=255)

                 aaaaGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTagagag                                                                                                                    >  2:659792/1‑140 (MQ=255)

                  aaaGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGt                                                                                                                   >  2:1346952/1‑140 (MQ=255)

                  aaaGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGt                                                                                                                   <  1:750808/140‑1 (MQ=255)

                       ccACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAAtt                                                                                                              <  1:629045/140‑1 (MQ=255)

                               gggAGAGTGGGCTGAAATGGGTAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCTGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTATAGAGTAAATTATCTGCTc                                                                                                      >  2:1474813/1‑140 (MQ=255)

                               gggAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTc                                                                                                      >  2:1123837/1‑140 (MQ=255)

                               gggAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTc                                                                                                      >  1:1122500/1‑140 (MQ=255)

                                 gagaGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCAc                                                                                                    <  1:773970/140‑1 (MQ=255)

                                   aagTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCg                                                                                                  <  1:162671/139‑1 (MQ=255)

                                    agTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGc                                                                                                 >  1:843510/1‑140 (MQ=255)

                                    agTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGc                                                                                                 >  1:1501088/1‑140 (MQ=255)

                                    agTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGc                                                                                                 <  1:1568322/140‑1 (MQ=255)

                                    agTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGCAAATTATCTGCTCACCGc                                                                                                 >  1:1305341/1‑140 (MQ=255)

                                       gggCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGc                                                                                              >  1:631797/1‑140 (MQ=255)

                                         gCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGc                                                                                                 <  1:30449/135‑1 (MQ=255)

                                         gCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGc                                                                                                 >  2:30449/1‑135 (MQ=255)

                                         gCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGt                                                                                            >  2:209344/1‑140 (MQ=255)

                                         gCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGt                                                                                            >  2:653970/1‑140 (MQ=255)

                                          cTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTc                                                                                           >  2:92662/1‑140 (MQ=255)

                                             aaaTGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCAcc                                                                                        <  1:406055/140‑1 (MQ=255)

                                             aaaTGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCAcc                                                                                        <  2:1537232/140‑1 (MQ=255)

                                             aaaTGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCAcc                                                                                        >  1:826002/1‑140 (MQ=255)

                                              aaTGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCAccc                                                                                       <  2:672585/140‑1 (MQ=255)

                                              aaTGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCAccc                                                                                       <  2:440331/140‑1 (MQ=255)

                                                tGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCt                                                                                     >  2:1150694/1‑140 (MQ=255)

                                                  ggAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTc                                                                                   >  2:539003/1‑140 (MQ=255)

                                                   gAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCg                                                                                  <  2:100044/140‑1 (MQ=255)

                                                    aaGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGt                                                                                 >  1:966770/1‑140 (MQ=255)

                                                       cTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCAcc                                                                                        >  2:282762/1‑130 (MQ=255)

                                                       cTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCAcc                                                                                        <  1:282762/130‑1 (MQ=255)

                                                       cTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTaaa                                                                              >  1:628622/1‑140 (MQ=255)

                                                        tAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAAt                                                                             <  2:61861/140‑1 (MQ=255)

                                                             aCTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGc                                                                        <  2:1501088/140‑1 (MQ=255)

                                                               tCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGt                                                                      <  2:826002/140‑1 (MQ=255)

                                                                 aaGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAg                                                                    <  1:92662/140‑1 (MQ=255)

                                                                 aaGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAg                                                                    >  1:603330/1‑140 (MQ=255)

                                                                 aaGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAg                                                                    >  1:24894/1‑140 (MQ=255)

                                                                      aaCTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGa                                                               >  2:591797/1‑140 (MQ=255)

                                                                       aCTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGaa                                                              <  1:1474813/140‑1 (MQ=255)

                                                                        cTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAAt                                                             <  1:1346952/140‑1 (MQ=255)

                                                                           aTCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATaca                                                          >  2:887502/1‑140 (MQ=255)

                                                                           aTCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATaca                                                          >  1:57230/1‑140 (MQ=255)

                                                                           aTCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATaca                                                          >  1:510083/1‑140 (MQ=255)

                                                                           aTCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATaca                                                          >  1:333243/1‑140 (MQ=255)

                                                                             aggAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACAcc                                                        <  2:837134/139‑1 (MQ=255)

                                                                              ggAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCa                                                       <  1:719106/140‑1 (MQ=255)

                                                                              ggAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCa                                                       >  2:129004/1‑140 (MQ=255)

                                                                                     aGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTg                                                <  1:177526/140‑1 (MQ=255)

                                                                                      ggACCACGCATTTCGGGGGCTATCAACGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGc                                               <  2:357711/140‑1 (MQ=255)

                                                                                          cACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTg                                                >  1:1006491/1‑135 (MQ=255)

                                                                                          cACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCa                                           >  2:1296095/1‑140 (MQ=255)

                                                                                            cGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAAt                                         >  1:463956/1‑140 (MQ=255)

                                                                                            cGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCACACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAAt                                         >  1:280278/1‑140 (MQ=255)

                                                                                             gCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATa                                        <  2:510083/140‑1 (MQ=255)

                                                                                             gCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATa                                        >  1:343675/1‑140 (MQ=255)

                                                                                             gCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATa                                        <  2:631797/140‑1 (MQ=255)

                                                                                                ttACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAAcc                                     >  1:551189/1‑140 (MQ=255)

                                                                                                 tACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACTCCAATAATTGCACCAATAAccc                                    <  1:201585/140‑1 (MQ=255)

                                                                                                  aCGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCg                                   >  1:1498948/1‑140 (MQ=255)

                                                                                                       ggCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTgg                              >  1:1052207/1‑140 (MQ=255)

                                                                                                        gCTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGc                             >  2:1350640/1‑140 (MQ=255)

                                                                                                        gCTATAATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGc                             >  2:1144633/1‑140 (MQ=255)

                                                                                                         cTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCa                            <  2:1120404/140‑1 (MQ=255)

                                                                                                         cTATCATCGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCa                            >  2:1558939/1‑140 (MQ=255)

                                                                                                           atcatcGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCaa                           >  2:313567/1‑139 (MQ=255)

                                                                                                           atcatcGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAAc                          >  1:109319/1‑140 (MQ=255)

                                                                                                           atcatcGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAAc                          >  2:340792/1‑140 (MQ=255)

                                                                                                           atcatcGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAAc                          >  1:571258/1‑140 (MQ=255)

                                                                                                              atcGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAAcgcg                       <  1:1350640/140‑1 (MQ=255)

                                                                                                              atcGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAAcgcg                       <  1:1107664/140‑1 (MQ=255)

                                                                                                              atcGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAAcgcg                       <  1:1123837/140‑1 (MQ=255)

                                                                                                              atcGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAAcgcg                       <  2:343675/140‑1 (MQ=255)

                                                                                                              atcGCCGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCATCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAAcgcg                       <  2:1552923/140‑1 (MQ=255)

                                                                                                                  ccGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAACGCGTTGc                   >  1:866436/1‑140 (MQ=255)

                                                                                                                   cGATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAACGCGTTGCa                  >  1:1248257/1‑140 (MQ=255)

                                                                                                                    gATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAACGCGTTGCAt                 <  1:653970/140‑1 (MQ=255)

                                                                                                                    gATGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAACGCGTTGCAt                 <  2:463956/140‑1 (MQ=255)

                                                                                                                     aTGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCACACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAACGCGTTGCATa                <  2:280278/140‑1 (MQ=255)

                                                                                                                      tGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAACGCGTTGc                   <  1:1434775/136‑1 (MQ=255)

                                                                                                                      tGGCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAACGCGTTGCATAc               >  2:772505/1‑140 (MQ=255)

                                                                                                                       ggCCGTGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAACGCGTTGCATACg              <  2:333243/140‑1 (MQ=255)

                                                                                                                            tGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAACGCGTTGCATACGCCCAt         <  1:129004/140‑1 (MQ=255)

                                                                                                                            tGATTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAACGCGTTGCATACGCCCAt         >  1:326240/1‑140 (MQ=255)

                                                                                                                              aTTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAACGCGTTGCATACGCCCATaa       <  1:1144633/140‑1 (MQ=255)

                                                                                                                              aTTCGGCAAATGAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAACGCGTTGCATACGCCCATaa       >  2:489247/1‑140 (MQ=255)

TGGGGCAGACCAATGAAAAAAGCCCACACAGGGGAGAGTGGGCTGAAATGGGAAGCTAAAGACTCAAGTAAACTTATCGGAAATAAGGACCACGCATTACGGGGGCTATCATCGCCGATGGCCGTGATTCGGCAAATCAGGTTGATTACGTAGAGAGTAAATTATCTGCTCACCGCTGCGTCACCCCTTCGTAAATCAGGCGTAGCGCGAATACACCAATAATTGCACCAATAACCCGACTGGCAACGCGTTGCATACGCCCATAAGCACG  >  NC_000913/345497‑345767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A