Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F48 I1 R1	45	111.1	3780378	99.2%	3750134	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	605,177	A→G	V83A (GTG→GCG)	nfsB ←	NAD(P)H nitroreductase NfsB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	605,177	0	A	G	100.0%	384.6 / NA	98	V83A (GTG→GCG)	nfsB	NAD(P)H nitroreductase NfsB
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (47/51); total (47/51)

Only 100 of 104 total aligned reads displayed.

TGCATATCAGCGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACACCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCACGGCTGGGAGTTGGTGCTGGATG  >  NC_000913/605042‑605312

tGCATATCAGCGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAAcgccac                                                                                                                                     >  1:106600/1‑140 (MQ=255)

tGCATATCAGCGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAAcgccac                                                                                                                                     >  1:68103/1‑140 (MQ=255)

tGCATATCAGCGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAAcgccac                                                                                                                                     >  1:1606317/1‑140 (MQ=255)

tGCATATCAGCGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGATCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAAcgccac                                                                                                                                     >  2:788877/1‑140 (MQ=255)

 gCATATCAGCGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCacg                                                                                                                                    <  1:219769/140‑1 (MQ=255)

  cATATCAGCGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCacga                                                                                                                                   >  1:1069071/1‑140 (MQ=255)

  cATATCAGCGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCacga                                                                                                                                   >  1:1083292/1‑140 (MQ=255)

  cATATCAGCGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCacga                                                                                                                                   >  1:731535/1‑140 (MQ=255)

  cATATCAGCGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCacga                                                                                                                                   >  1:1863119/1‑140 (MQ=255)

  cATATCAGCGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCacga                                                                                                                                   >  1:1807254/1‑140 (MQ=255)

   atatCAGCGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCacgac                                                                                                                                  <  1:1608418/140‑1 (MQ=255)

     atCAGCGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGt                                                                                                                                >  2:813985/1‑140 (MQ=255)

          cGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAg                                                                                                                           >  1:1456518/1‑140 (MQ=255)

          cGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAg                                                                                                                           >  2:396289/1‑140 (MQ=255)

          cGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAg                                                                                                                           <  2:213877/140‑1 (MQ=255)

            aagaaCTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGc                                                                                                                         >  1:1738174/1‑140 (MQ=255)

            aagaaCTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGc                                                                                                                         >  1:533292/1‑140 (MQ=255)

            aagaaCTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGc                                                                                                                         >  1:514490/1‑140 (MQ=255)

            aagaaCTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGc                                                                                                                         >  2:699007/1‑140 (MQ=255)

            aagaaCTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGc                                                                                                                         >  2:321874/1‑140 (MQ=255)

            aagaaCTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGc                                                                                                                         >  2:1669620/1‑140 (MQ=255)

               aaCTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATc                                                                                                                      >  1:1248429/1‑140 (MQ=255)

               aaCTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCACCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATc                                                                                                                      >  1:870245/1‑140 (MQ=255)

                  ttGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAg                                                                                                                   <  1:517421/140‑1 (MQ=255)

                  ttGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAg                                                                                                                   <  2:68103/140‑1 (MQ=255)

                    gCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCa                                                                                                                 >  2:1221363/1‑140 (MQ=255)

                    gCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCa                                                                                                                 >  1:318703/1‑140 (MQ=255)

                         cTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTa                                                                                                            <  2:1007700/140‑1 (MQ=255)

                          tttATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTAc                                                                                                           <  1:202749/140‑1 (MQ=255)

                           ttATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAACATTTTACg                                                                                                          <  2:514490/140‑1 (MQ=255)

                            tATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGc                                                                                                         <  2:70158/140‑1 (MQ=255)

                               cGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCg                                                                                                      <  2:1372462/140‑1 (MQ=255)

                               cGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCg                                                                                                      <  1:696048/140‑1 (MQ=255)

                               cGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCg                                                                                                      <  2:502837/140‑1 (MQ=255)

                                gTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGt                                                                                                     <  2:474878/140‑1 (MQ=255)

                                 ttCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGATCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGtt                                                                                                    <  1:788877/140‑1 (MQ=255)

                                  tCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTg                                                                                                   >  1:626136/1‑140 (MQ=255)

                                  tCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTg                                                                                                   <  2:1248429/140‑1 (MQ=255)

                                  tCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTg                                                                                                   <  2:870245/140‑1 (MQ=255)

                                   cgcgGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCTACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTgt                                                                                                  >  2:1479319/1‑139 (MQ=255)

                                   cgcgGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTgc                                                                                                  >  1:1200074/1‑139 (MQ=255)

                                    gcgGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGaa                                                                                                 <  2:1864474/140‑1 (MQ=255)

                                    gcgGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGaa                                                                                                 <  2:1863119/140‑1 (MQ=255)

                                    gcgGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGaa                                                                                                 <  1:1105942/140‑1 (MQ=255)

                                    gcgGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGaa                                                                                                 <  2:106600/140‑1 (MQ=255)

                                    gcgGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGaa                                                                                                 <  1:813985/140‑1 (MQ=255)

                                    gcgGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGaa                                                                                                 <  2:1031142/140‑1 (MQ=255)

                                    gcgGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAAAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGaa                                                                                                 <  1:166499/140‑1 (MQ=255)

                                     cgGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTg                                                                                                   <  1:1407293/137‑1 (MQ=255)

                                     cgGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTg                                                                                                   >  2:1407293/1‑137 (MQ=255)

                                     cgGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAac                                                                                                <  2:533292/140‑1 (MQ=255)

                                     cgGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAac                                                                                                <  1:321874/140‑1 (MQ=255)

                                        cTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACg                                                                                             <  1:1669620/140‑1 (MQ=255)

                                        cTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACg                                                                                             <  2:53485/140‑1 (MQ=255)

                                                  cGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCgg                                                                                   >  1:1488841/1‑140 (MQ=255)

                                                    gCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCa                                                                                 <  2:348125/140‑1 (MQ=255)

                                                       tGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCg                                                                              >  2:589682/1‑140 (MQ=255)

                                                       tGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCg                                                                              >  2:506282/1‑140 (MQ=255)

                                                                   cATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAaca                                                                  <  2:1545816/140‑1 (MQ=255)

                                                                       ggCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACAcgcg                                                              <  2:179468/140‑1 (MQ=255)

                                                                         cATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCt                                                            <  2:78568/140‑1 (MQ=255)

                                                                          aTCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCtt                                                           <  2:1069071/140‑1 (MQ=255)

                                                                              tCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTAcc                                                       <  2:1738174/140‑1 (MQ=255)

                                                                                  ggTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACcttct                                                   >  1:836948/1‑140 (MQ=255)

                                                                                   gTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACcttctt                                                  >  2:1171951/1‑140 (MQ=255)

                                                                                   gTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACcttctt                                                  <  2:1083292/140‑1 (MQ=255)

                                                                                      aacaacCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCg                                               >  1:1236051/1‑140 (MQ=255)

                                                                                       acaacCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGt                                              >  2:1632134/1‑140 (MQ=255)

                                                                                        caacCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTg                                             <  1:589682/140‑1 (MQ=255)

                                                                                        caacCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTg                                             >  1:287832/1‑140 (MQ=255)

                                                                                        caacCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTg                                             >  1:235806/1‑140 (MQ=255)

                                                                                         aacCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGc                                            >  1:1482928/1‑140 (MQ=255)

                                                                                             aGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGc                                        <  1:1632134/140‑1 (MQ=255)

                                                                                             aGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGc                                        >  2:1298790/1‑140 (MQ=255)

                                                                                              gCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGca                                       >  2:1203143/1‑140 (MQ=255)

                                                                                                  cAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGcaacaa                                   >  1:1441723/1‑140 (MQ=255)

                                                                                                  cAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGcaacaa                                   >  1:1840549/1‑140 (MQ=255)

                                                                                                         aCATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATg                            >  2:1293379/1‑140 (MQ=255)

                                                                                                         aCATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATg                            >  2:325128/1‑140 (MQ=255)

                                                                                                         aCATCGTCCATCGCGGCTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGGTGAACACGTAAGTACCGGCAGCGGAGTTGGCAACACGCGCTTTACCTTCTTCCGTTCTGGCAACAAGCAAAtt                            >  2:1478243/1‑139 (MQ=255)

                                                                                                         aCATCATCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATg                            >  2:1227926/1‑140 (MQ=255)

                                                                                                          cATCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGc                           >  1:1487805/1‑140 (MQ=255)

                                                                                                          aaTCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGc                           <  2:731535/139‑1 (MQ=255)

                                                                                                            tCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCa                         <  2:318703/140‑1 (MQ=255)

                                                                                                            tCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCa                         <  1:1203143/140‑1 (MQ=255)

                                                                                                            tCGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCa                         <  1:1705264/140‑1 (MQ=255)

                                                                                                             cGTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCAc                        >  1:1066947/1‑140 (MQ=255)

                                                                                                              gTCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCACg                       >  1:505336/1‑140 (MQ=255)

                                                                                                               tCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCACgg                      >  2:410749/1‑140 (MQ=255)

                                                                                                               tCCATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCACgg                      >  1:721982/1‑140 (MQ=255)

                                                                                                                 cATCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCACGGCt                    <  2:626136/140‑1 (MQ=255)

                                                                                                                   tCGCGGTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCACGGCTgg                  >  1:1592802/1‑140 (MQ=255)

                                                                                                                       ggTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCACGGCTGGGAGt              <  1:1227926/140‑1 (MQ=255)

                                                                                                                       ggTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCACGGCTGGGAGt              <  2:1606317/140‑1 (MQ=255)

                                                                                                                       ggTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCACGGCTGGGAGt              <  2:1066947/140‑1 (MQ=255)

                                                                                                                       ggTTTTTGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCACGGCTGGGAGt              <  1:62622/140‑1 (MQ=255)

                                                                                                                           tttGCACAGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCACGGCTGGGAGTTGGt          >  1:166172/1‑140 (MQ=255)

                                                                                                                                acaGAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCACGGCTGGGAGTTGGTGCTgg     <  2:172861/140‑1 (MQ=255)

                                                                                                                                   gAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCACGGCTGGGAGTTGGTGCTGGATg  <  1:142490/140‑1 (MQ=255)

                                                                                                                                   gAACGCCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTCCTGGCAACAATAAAATGCCACGGCTGGGAGTTGGTGCTGGATg  <  2:1488841/140‑1 (MQ=255)

TGCATATCAGCGAAGAACTTGCGACCTTTATCGTTCGCGGCTTTCGCTTCCGGCGTGGCAAAGCGGCCATCGGCATCTTCCTGGTCAACAACCAGCTTCAGCCAGACATCGTCCATCGCGGTTTTTGCACAGAACACCACGACGTGCGAGGCATCAAGCATTTTACGCTCGTTGAACACGTAATTACCGGCAGCGGATTTGGCAACACGCGCTTTACCTTCTTCCGTGCTGGCAACAATAAAATGCCACGGCTGGGAGTTGGTGCTGGATG  >  NC_000913/605042‑605312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A