Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F48 I1 R1 45 111.1 3780378 99.2% 3750134 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 689,676 C→A P402P (CCG→CCT)  lnt ← apolipoprotein N‑acyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913689,6760CA100.0% 323.2 / NA 90P402P (CCG→CCT) lntapolipoprotein N‑acyltransferase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (59/31);  total (59/31)

GCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCAGATC  >  NC_000913/689541‑689807
                                                                                                                                       |                                                                                                                                    
gCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGc                                                                                                                                  >  2:1117667/1‑140 (MQ=255)
             ctgcGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATcgcg                                                                                                                     <  1:1595530/140‑1 (MQ=255)
              tgcGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCgcgc                                                                                                                    >  1:890450/1‑140 (MQ=255)
                 gcAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACt                                                                                                                 >  1:1016242/1‑140 (MQ=255)
                  cAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACtt                                                                                                                >  1:1738382/1‑140 (MQ=255)
                    aCAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGc                                                                                                              <  1:545303/140‑1 (MQ=255)
                         gggCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGcc                                                                                                         <  2:787696/140‑1 (MQ=255)
                          ggCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCg                                                                                                        >  1:1350028/1‑140 (MQ=255)
                          ggCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCg                                                                                                        >  1:1398659/1‑140 (MQ=255)
                          ggCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCg                                                                                                        >  2:156447/1‑140 (MQ=255)
                          ggCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCg                                                                                                        >  2:1481503/1‑140 (MQ=255)
                                ccAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATg                                                                                                  <  2:1016242/140‑1 (MQ=255)
                                 cAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGa                                                                                                 >  1:564468/1‑140 (MQ=255)
                                 cAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGa                                                                                                 >  1:1225405/1‑140 (MQ=255)
                                  aGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGAt                                                                                                >  1:947040/1‑140 (MQ=255)
                                   gCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGAtc                                                                                               <  2:890450/140‑1 (MQ=255)
                                    cTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGAtct                                                                                              <  2:747366/140‑1 (MQ=255)
                                         gcgcACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGACAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAg                                                                                         >  2:1292090/1‑140 (MQ=255)
                                          cgcacgcaTTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGc                                                                                        >  2:276430/1‑140 (MQ=255)
                                                 aTTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGc                                                                                 <  2:438446/140‑1 (MQ=255)
                                                 aTTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGc                                                                                 <  2:1492361/140‑1 (MQ=255)
                                                    cgcgCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGc                                                                              >  2:827536/1‑140 (MQ=255)
                                                       gcCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGt                                                                           <  2:988653/140‑1 (MQ=255)
                                                          aTCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAg                                                                        <  1:296915/140‑1 (MQ=255)
                                                           tCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTGGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAATTAGCCGCAGTAAGc                                                                       >  2:69172/1‑140 (MQ=255)
                                                           tCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGc                                                                       >  1:1749058/1‑140 (MQ=255)
                                                            cTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCt                                                                      <  2:564468/140‑1 (MQ=255)
                                                            cTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCt                                                                      <  2:1225405/140‑1 (MQ=255)
                                                                  gtgtTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGAAAGCTCAATAc                                                                <  1:1117667/140‑1 (MQ=255)
                                                                     ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCAt                                                             >  2:1308890/1‑140 (MQ=255)
                                                                     ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCAt                                                             >  1:1740337/1‑140 (MQ=255)
                                                                     ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCAt                                                             >  1:1632736/1‑140 (MQ=255)
                                                                       gCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATAAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCAttt                                                           >  1:1773612/1‑140 (MQ=255)
                                                                          aTGGACCAATAGATTTACCAAACTATGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCTGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGcc                                                        >  1:424847/1‑140 (MQ=255)
                                                                             gACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGAc                                                     >  2:710303/1‑140 (MQ=255)
                                                                               ccAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGGATCAGGGCAGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAg                                                   >  1:412961/1‑140 (MQ=255)
                                                                                  aTAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAgcgg                                                <  2:603667/140‑1 (MQ=255)
                                                                                  aTAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAgcgg                                                >  1:525815/1‑140 (MQ=255)
                                                                                    aGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAgcggcg                                              <  2:1632736/140‑1 (MQ=255)
                                                                                     gATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGcggcgg                                             <  1:827536/140‑1 (MQ=255)
                                                                                      aTTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCggcggc                                            <  2:637820/140‑1 (MQ=255)
                                                                                       tttACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGcggcgg                                             >  1:741161/1‑138 (MQ=255)
                                                                                       tttACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGcggcgg                                             <  2:741161/138‑1 (MQ=255)
                                                                                        ttACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTg                                          >  2:324768/1‑140 (MQ=255)
                                                                                        ttACCAAACCACGCATCGTTGGAGATAGTCAGCAGACAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTg                                          <  1:1292090/140‑1 (MQ=255)
                                                                                         tACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTgg                                         <  2:765485/140‑1 (MQ=255)
                                                                                              aaCCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGatata                                    <  2:1749058/140‑1 (MQ=255)
                                                                                              aaCCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGatata                                    <  1:156447/140‑1 (MQ=255)
                                                                                               aCCGCGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGatatat                                   >  1:478561/1‑140 (MQ=255)
                                                                                               aCCACGCATTGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGatatat                                   >  2:1217076/1‑140 (MQ=255)
                                                                                               aCCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGTCGCAGTAACCTCAATACCATTTGCCGACAGCGGCGGCTGGatatat                                   >  1:41485/1‑140 (MQ=255)
                                                                                               aCCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGatatat                                   >  2:775065/1‑140 (MQ=255)
                                                                                                   cGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGcc                               >  1:1458693/1‑140 (MQ=255)
                                                                                                   cGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGcc                               >  2:1258905/1‑140 (MQ=255)
                                                                                                     cATCGTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑a                            <  2:947040/140‑1 (MQ=255)
                                                                                                         gTTGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGc                        <  2:1738382/140‑1 (MQ=255)
                                                                                                          ttGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCt                       >  2:1068701/1‑140 (MQ=255)
                                                                                                           tGGAGATAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTg                      >  1:1571350/1‑140 (MQ=255)
                                                                                                              agaTAGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAac                   >  1:1571011/1‑140 (MQ=255)
                                                                                                                  aGTCAGCAGTTAGTCGGAATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAACACCATTTGCCGACAGCTTCGCCTGATAATATTGCCCAACGGCtaactacc                >  2:1215099/1‑133 (MQ=255)
                                                                                                                  aGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAacgacg               >  1:321142/1‑140 (MQ=255)
                                                                                                                  aGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAacgacg               >  1:557297/1‑140 (MQ=255)
                                                                                                                  aGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAacgacg               >  2:40343/1‑140 (MQ=255)
                                                                                                                  aGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAacgacg               >  2:1370676/1‑140 (MQ=255)
                                                                                                                  aGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTCGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAacgacg               >  1:1447164/1‑140 (MQ=255)
                                                                                                                  aGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAAAGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAacgacg               >  2:555798/1‑140 (MQ=255)
                                                                                                                  aGTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCGCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAacgacg               >  1:407882/1‑140 (MQ=255)
                                                                                                                   gTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAAcgacga              >  1:1553809/1‑140 (MQ=255)
                                                                                                                   gTCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAAcgacga              >  1:53831/1‑140 (MQ=255)
                                                                                                                    tCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACgacgac             <  1:1068701/140‑1 (MQ=255)
                                                                                                                    tCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACgacgac             >  2:1756636/1‑140 (MQ=255)
                                                                                                                    tCAGCAGATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGACC‑ACGGCTGAACgacgac             >  2:179890/1‑140 (MQ=255)
                                                                                                                      agcagATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACAt           <  2:525815/140‑1 (MQ=255)
                                                                                                                      agcagATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACAt           <  2:489739/140‑1 (MQ=255)
                                                                                                                        cagATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCg         >  2:501528/1‑140 (MQ=255)
                                                                                                                        cagATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCg         >  2:159198/1‑140 (MQ=255)
                                                                                                                        cagATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCg         >  2:789107/1‑140 (MQ=255)
                                                                                                                        cagATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCg         >  2:1851091/1‑140 (MQ=255)
                                                                                                                         agATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCgg        <  1:775065/140‑1 (MQ=255)
                                                                                                                         agATAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCgg        <  1:789107/140‑1 (MQ=255)
                                                                                                                           aTAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCa      >  1:453215/1‑140 (MQ=255)
                                                                                                                           aTAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCa      <  1:27620/140‑1 (MQ=255)
                                                                                                                           aTAGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCa      <  2:1740337/140‑1 (MQ=255)
                                                                                                                             aGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCAgt    >  2:978724/1‑139 (MQ=255)
                                                                                                                             aGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCAGa    >  1:424743/1‑140 (MQ=255)
                                                                                                                             aGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCAGa    >  1:1583293/1‑140 (MQ=255)
                                                                                                                             aGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCAGa    >  1:156186/1‑140 (MQ=255)
                                                                                                                             aGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCAGa    >  1:1560513/1‑140 (MQ=255)
                                                                                                                             aGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCAGa    >  1:1316546/1‑140 (MQ=255)
                                                                                                                             aGTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCAGa    <  2:407882/140‑1 (MQ=255)
                                                                                                                              gTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCAGAt   >  1:935384/1‑140 (MQ=255)
                                                                                                                              gTCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCAGAt   >  2:1674036/1‑140 (MQ=255)
                                                                                                                               tCGGTATCAGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCAGATc  >  2:356781/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                    
GCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCC‑ACGGCTGAACGACGACATCGGCAGATC  >  NC_000913/689541‑689807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A