Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F48 I1 R1	45	111.1	3780378	99.2%	3750134	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	844,373	G→T	L370M (CTG→ATG)	ybiO ←	moderate conductance mechanosensitive channel

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	844,373	0	G	T	100.0%	327.7 / NA	91	L370M (CTG→ATG)	ybiO	moderate conductance mechanosensitive channel
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (55/36); total (55/36)

AGCTCCGGATAGTTACGCTGAGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCAGGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGCTCCGCGAAGTTGAGCAA  >  NC_000913/844237‑844508

aGCTCCGGATAGTTACGCTGAGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCt                                                                                                                                      <  1:1782177/140‑1 (MQ=255)

aGCTCCGGATAGTTACGCTGAGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCt                                                                                                                                      <  1:130264/140‑1 (MQ=255)

aGCTCCGGATAGTTACGCTGAGTATGTGGCGAGAGAGTGATGGTTTTCGACAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCt                                                                                                                                      >  1:1750030/1‑140 (MQ=255)

 gCTCCGGATAGTTACGCTGAGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTg                                                                                                                                     <  1:255131/140‑1 (MQ=255)

  cTCCGGATAGTTACGCTGAGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGt                                                                                                                                    >  1:207452/1‑140 (MQ=255)

    ccGGATAGTTACGCTGAGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTg                                                                                                                                  >  2:640203/1‑140 (MQ=255)

     cGGATCGTTACGCTGAGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGc                                                                                                                                 <  2:1160122/140‑1 (MQ=255)

     cGGATAGTTACGCTGAGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGGCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAAGCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGc                                                                                                                                 <  1:474024/140‑1 (MQ=255)

     cGGATAGTTACGCTGAGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGc                                                                                                                                 <  1:206740/140‑1 (MQ=255)

     cGGATAGTTACGCTGAGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGc                                                                                                                                 <  2:1015861/140‑1 (MQ=255)

      ggATAGTTACGCTGAGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGcc                                                                                                                                <  1:283248/140‑1 (MQ=255)

       gATAGTTACGCTGAGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGccc                                                                                                                               >  2:1350397/1‑140 (MQ=255)

                 cTGAGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTACACCCATCATAAATTTCATGCTGTTGCCCGGATCGaaca                                                                                                                     >  2:467850/1‑140 (MQ=255)

                    aGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACg                                                                                                                  >  1:1220935/1‑140 (MQ=255)

                    aGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACg                                                                                                                  <  2:1079053/140‑1 (MQ=255)

                    aGTATGCGGCGAGAGAGTGATGGTTTCCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGTCCGGCTCGAACAACg                                                                                                                  >  1:98342/1‑140 (MQ=255)

                      tATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACgaa                                                                                                                >  2:1011528/1‑140 (MQ=255)

                      tATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACgaa                                                                                                                <  2:1199011/140‑1 (MQ=255)

                      tATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTACACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACgaa                                                                                                                <  1:467850/140‑1 (MQ=255)

                      tATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCAGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACgaa                                                                                                                >  1:814173/1‑140 (MQ=255)

                      tATGTGGCGAGAGAGTGATGGATTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACgaa                                                                                                                >  2:1010864/1‑140 (MQ=255)

                         gtgGCGAGAGAGTGATGGTTTTCGCCAGCCAGTGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCAACATAAATTTCATGCTGTTGCCCGGATCGAACAACgaaaag                                                                                                             >  1:1022994/1‑140 (MQ=255)

                            gCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACgaaaagaaa                                                                                                          >  1:283760/1‑140 (MQ=255)

                              gagagaGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGaaaaa                                                                                                        >  2:1247020/1‑140 (MQ=255)

                              gagagaGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGaaaaa                                                                                                        >  1:1391059/1‑140 (MQ=255)

                              gagagaGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGaaaaa                                                                                                        >  2:429954/1‑140 (MQ=255)

                              gagagaGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGaaaaa                                                                                                        >  1:473561/1‑140 (MQ=255)

                              gagagaGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGaaaaa                                                                                                        >  2:785248/1‑140 (MQ=255)

                               agagagTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAAc                                                                                                       >  2:838048/1‑140 (MQ=255)

                                gagagTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACa                                                                                                      >  2:1244941/1‑140 (MQ=255)

                                gagagTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACa                                                                                                      >  2:1305877/1‑140 (MQ=255)

                                 agagTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAg                                                                                                     <  2:1163106/140‑1 (MQ=255)

                                 agagTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAg                                                                                                     <  2:768318/140‑1 (MQ=255)

                                 agagTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAg                                                                                                     >  1:1796110/1‑140 (MQ=255)

                                 agagTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAg                                                                                                     <  1:1620784/140‑1 (MQ=255)

                                   agTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCa                                                                                                   <  1:105713/140‑1 (MQ=255)

                                   agTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCa                                                                                                   <  1:1305877/140‑1 (MQ=255)

                                       aTGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGAt                                                                                               <  1:1056132/140‑1 (MQ=255)

                                             ttCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATa                                                                                         >  1:882218/1‑140 (MQ=255)

                                               cGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAgg                                                                                       >  1:996793/1‑140 (MQ=255)

                                                 ccagccagCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCAATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGgcg                                                                                     >  2:1634979/1‑140 (MQ=255)

                                                    gccagcGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCtt                                                                                  >  1:1510025/1‑140 (MQ=255)

                                                      cagcGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTgc                                                                                <  1:838048/140‑1 (MQ=255)

                                                         cGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTgccag                                                                             >  2:1206694/1‑140 (MQ=255)

                                                          gggAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTgccagc                                                                            <  1:1010864/140‑1 (MQ=255)

                                                          gggAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTgccagc                                                                            <  2:83924/140‑1 (MQ=255)

                                                          gggAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCAACATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTgccagc                                                                            <  2:1022994/140‑1 (MQ=255)

                                                           ggAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTgccagcc                                                                           <  1:635596/140‑1 (MQ=255)

                                                           ggAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTgccagcc                                                                           <  1:1191690/140‑1 (MQ=255)

                                                                    aCCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCcaca                                                                  >  2:423603/1‑140 (MQ=255)

                                                                     ccGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCacac                                                                 <  1:429954/140‑1 (MQ=255)

                                                                      cGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCacact                                                                >  2:671406/1‑139 (MQ=255)

                                                                      cGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACAcc                                                                >  1:83034/1‑140 (MQ=255)

                                                                      cGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACAcc                                                                >  2:1372930/1‑140 (MQ=255)

                                                                        gAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAg                                                              >  2:615346/1‑140 (MQ=255)

                                                                           acaaacGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAgcgc                                                           >  1:776334/1‑140 (MQ=255)

                                                                                cGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAGGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCGCACCAGCGCAAAgg                                                      <  1:1206694/140‑1 (MQ=255)

                                                                                    gCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGcgcg                                                  <  1:816575/140‑1 (MQ=255)

                                                                                     cGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCgg                                                 >  1:172571/1‑140 (MQ=255)

                                                                                         aCCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGTCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACTCCAGCGCAAAGGCGCGGATaa                                             <  2:98342/140‑1 (MQ=255)

                                                                                             ataatCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAg                                         >  1:1649322/1‑140 (MQ=255)

                                                                                             ataatCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAg                                         >  2:231996/1‑140 (MQ=255)

                                                                                              taatCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAgg                                        <  1:1293930/140‑1 (MQ=255)

                                                                                              taatCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAgg                                        <  2:283760/140‑1 (MQ=255)

                                                                                              taatCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAgg                                        <  2:1391059/140‑1 (MQ=255)

                                                                                               aatCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGc                                       >  2:742470/1‑140 (MQ=255)

                                                                                                  ccccAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGa                                    >  2:1089611/3‑140 (MQ=255)

                                                                                                    ccAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGaaa                                  >  2:1886347/1‑140 (MQ=255)

                                                                                                    ccAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGaaa                                  >  1:694073/1‑140 (MQ=255)

                                                                                                    ccAGGCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGaaa                                  >  2:1317490/1‑140 (MQ=255)

                                                                                                       ggCTGCGCACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAg                               >  2:454243/1‑140 (MQ=255)

                                                                                                           gcgcACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCa                           >  2:1306981/1‑140 (MQ=255)

                                                                                                            cgcACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAg                          >  1:1331170/1‑140 (MQ=255)

                                                                                                            cgcACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAg                          <  2:776334/140‑1 (MQ=255)

                                                                                                            cgcACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAg                          >  1:1319503/1‑140 (MQ=255)

                                                                                                             gcACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCCGAAAAAGGCCAGc                         >  1:1402332/1‑140 (MQ=255)

                                                                                                              cACCGTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCg                        >  1:602224/1‑140 (MQ=255)

                                                                                                                  gTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATg                    <  2:207452/140‑1 (MQ=255)

                                                                                                                  gTTGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATg                    >  1:119299/1‑140 (MQ=255)

                                                                                                                   ttGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGc                   >  1:1023214/1‑140 (MQ=255)

                                                                                                                    tGCACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGCt                  <  1:671406/140‑1 (MQ=255)

                                                                                                                      cACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGCTcc                >  2:1351631/1‑140 (MQ=255)

                                                                                                                      cACCCATCATAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGCTcc                <  2:172571/140‑1 (MQ=255)

                                                                                                                           atcatAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGCTCCGCGaa           >  1:1762554/1‑140 (MQ=255)

                                                                                                                           atcatAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGCTCCGCGaa           >  1:240457/1‑140 (MQ=255)

                                                                                                                           atcatAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGCTCCGCGaa           >  2:260485/1‑140 (MQ=255)

                                                                                                                             catAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGCTCCGCGAAGt         >  1:296846/1‑140 (MQ=255)

                                                                                                                             catAAATTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGCTCCGCGAAGt         <  2:882218/140‑1 (MQ=255)

                                                                                                                                aaaTTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGCTCCGCGAAGTTGa      >  2:425864/1‑140 (MQ=255)

                                                                                                                                aaaTTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGCTCCGCGAAGTTGa      >  2:1616308/1‑140 (MQ=255)

                                                                                                                                  aTTTCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGCTCCGCGAAGTTGAGc    <  1:260485/140‑1 (MQ=255)

                                                                                                                                    ttCATGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGCTCCGCGAAGTTGAGCaa  <  1:423603/140‑1 (MQ=255)

AGCTCCGGATAGTTACGCTGAGTATGTGGCGAGAGAGTGATGGTTTTCGCCAGCCAGCGGGAAAACATACCGGAAACAAACGCTGCGATACCAATAATCGCCAGGCTGCGCACCGTTGCACCCATCATAAATTTCAGGCTGTTGCCCGGATCGAACAACGAAAAGAAAAACAGCACGATAAAATAGGCGCTTGCCAGCCAGTGCCACACCAGCGCAAAGGCGCGGATAAACAGGCTGAAAAAGGCCAGCGAATGCTCCGCGAAGTTGAGCAA  >  NC_000913/844237‑844508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A