Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F48 I1 R1	62	147.6	5031800	99.1%	4986513	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	91,791	C→A	R127S (CGC→AGC)	ftsI →	peptidoglycan DD‑transpeptidase FtsI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	91,791	0	C	A	100.0%	402.2 / NA	112	R127S (CGC→AGC)	ftsI	peptidoglycan DD‑transpeptidase FtsI
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (54/58); total (54/58)

Only 100 of 117 total aligned reads displayed.

TTAGCGGTGAGCGTGCCGGTAAAAGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCCGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGTTACTATCCGTCCG  >  NC_000913/91656‑91926

ttAGCGGTGAGCGTGCCGGTAAAAGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCAt                                                                                                                                     >  2:1034919/1‑140 (MQ=255)

ttAGCGGTGAGCGTGCCGGTAAAAGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCAt                                                                                                                                     <  1:1163434/140‑1 (MQ=255)

ttAGCGGTGAGCGTGCCGGTAAAAGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCAt                                                                                                                                     <  1:1385206/140‑1 (MQ=255)

  aGCGGTGAGCGTGCCGGTAAAAGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTa                                                                                                                                   <  1:394293/140‑1 (MQ=255)

      gTGAGCGTGCCGGTAAAAGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGc                                                                                                                               <  2:1942443/140‑1 (MQ=255)

        gAGCGTGCCGGTAAAAGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCa                                                                                                                             <  2:1043615/140‑1 (MQ=255)

        gAGCGTGCCGGTAAAAGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCa                                                                                                                             <  1:217828/140‑1 (MQ=255)

          gCGTGCCGGTAAAAGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAAc                                                                                                                           >  1:675312/1‑140 (MQ=255)

          gCGTGCCGGTAAAAGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAAc                                                                                                                           >  1:601278/1‑140 (MQ=255)

           cGTGCCGGTAAAAGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAAcc                                                                                                                          <  1:1580784/140‑1 (MQ=255)

              gCCGGTAAAAGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGa                                                                                                                       >  1:1305605/1‑140 (MQ=255)

                 ggTAAAAGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAg                                                                                                                    >  1:2197284/1‑140 (MQ=255)

                     aaaGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGgcg                                                                                                                <  1:1997513/140‑1 (MQ=255)

                     aaaGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGgcg                                                                                                                <  2:2162534/140‑1 (MQ=255)

                     aaaGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGgcg                                                                                                                <  2:1796409/140‑1 (MQ=255)

                     aaaGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGgcg                                                                                                                <  1:2280692/140‑1 (MQ=255)

                     aaaGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGgcg                                                                                                                <  1:2280772/140‑1 (MQ=255)

                     aaaGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGgcg                                                                                                                <  1:298977/140‑1 (MQ=255)

                     aaaGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGgcg                                                                                                                <  1:307403/140‑1 (MQ=255)

                     aaaGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGgcg                                                                                                                <  2:1313520/140‑1 (MQ=255)

                     aaaGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGgcg                                                                                                                <  2:1752996/140‑1 (MQ=255)

                      aaGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGgcgc                                                                                                               <  2:528524/140‑1 (MQ=255)

                          gATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCttta                                                                                                           >  1:888591/1‑140 (MQ=255)

                          gATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCttta                                                                                                           <  1:721328/140‑1 (MQ=255)

                            tttGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCtttatt                                                                                                         >  1:2011666/1‑140 (MQ=255)

                            tttGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCtttatt                                                                                                         >  1:2073358/1‑140 (MQ=255)

                            tttGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCtttatt                                                                                                         >  1:2430886/1‑140 (MQ=255)

                                 gCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCt                                                                                                    >  1:1300782/1‑140 (MQ=255)

                                   tGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTgg                                                                                                  <  2:1305605/140‑1 (MQ=255)

                                          aaaGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCa                                                                                           >  1:655973/1‑140 (MQ=255)

                                             gaagTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGt                                                                                        <  1:2064928/140‑1 (MQ=255)

                                              aagTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTg                                                                                       <  2:675312/140‑1 (MQ=255)

                                              aagTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTg                                                                                       <  1:1605538/140‑1 (MQ=255)

                                              aagTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTg                                                                                       <  2:1300782/140‑1 (MQ=255)

                                               agTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGcgcg                                                                                              <  1:483778/132‑1 (MQ=255)

                                               agTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGcgcg                                                                                              >  2:483778/1‑132 (MQ=255)

                                               agTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGa                                                                                      >  1:733147/1‑140 (MQ=255)

                                                 tGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAAc                                                                                    >  2:410648/1‑140 (MQ=255)

                                                 tGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAAc                                                                                    >  2:114334/1‑140 (MQ=255)

                                                 tGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAAc                                                                                    >  2:1783320/1‑140 (MQ=255)

                                                      gACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGa                                                                               >  2:1634387/1‑140 (MQ=255)

                                                        cGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACa                                                                             <  1:942231/140‑1 (MQ=255)

                                                        cGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCG‑AAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACAt                                                                            >  1:526068/1‑140 (MQ=255)

                                                        agCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACa                                                                             <  2:888591/139‑1 (MQ=255)

                                                           tGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCTCGTCAGGTGAACCCTGACATgg                                                                          >  2:394182/1‑140 (MQ=255)

                                                             gCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCg                                                                        >  1:18640/1‑140 (MQ=255)

                                                             gCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCg                                                                        <  1:1949902/140‑1 (MQ=255)

                                                             gCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCg                                                                        >  1:836370/1‑140 (MQ=255)

                                                               ggTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGa                                                                      <  2:429903/140‑1 (MQ=255)

                                                               ggTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGa                                                                      <  1:1634387/140‑1 (MQ=255)

                                                               ggTATCAGCGTCGGTGACCGATGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGa                                                                      <  2:270495/140‑1 (MQ=255)

                                                                   tCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTAc                                                                  >  2:1828205/1‑140 (MQ=255)

                                                                   tCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTAc                                                                  >  1:979781/1‑140 (MQ=255)

                                                                    cAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACa                                                                 <  1:2162577/140‑1 (MQ=255)

                                                                       cGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGTCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCa                                                              >  1:1852541/1‑140 (MQ=255)

                                                                       cGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGTCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCa                                                              <  2:1852541/140‑1 (MQ=255)

                                                                       cGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCa                                                              >  2:1034726/1‑140 (MQ=255)

                                                                       cGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCa                                                              >  1:2433625/1‑140 (MQ=255)

                                                                          cGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCaaaa                                                           <  2:2423876/140‑1 (MQ=255)

                                                                           ggTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACa                                                                 >  1:420848/1‑133 (MQ=255)

                                                                           ggTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCaaaaa                                                          >  1:1442715/1‑140 (MQ=255)

                                                                            gTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCaaaaaa                                                         >  1:1054317/1‑140 (MQ=255)

                                                                                ccGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAaaactga                                                     <  1:452641/140‑1 (MQ=255)

                                                                                  gCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAaaactgaaa                                                   <  2:280283/140‑1 (MQ=255)

                                                                                  gCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAaaactgaaa                                                   <  2:2430558/140‑1 (MQ=255)

                                                                                  gCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAaaactgaaa                                                   <  1:1034919/140‑1 (MQ=255)

                                                                                   cTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAaaactgaaac                                                  >  2:846674/1‑140 (MQ=255)

                                                                                      gAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGc                                               <  1:1437304/140‑1 (MQ=255)

                                                                                       aaGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGcc                                              <  2:1398225/140‑1 (MQ=255)

                                                                                           cgcTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCgggg                                          <  2:1442715/140‑1 (MQ=255)

                                                                                           cgcTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCgggg                                          >  1:1040829/1‑140 (MQ=255)

                                                                                                gCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCa                                     >  1:1988048/1‑140 (MQ=255)

                                                                                                  tAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATc                                   <  2:904211/140‑1 (MQ=255)

                                                                                                     cgcgCTCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGc                                >  2:941193/1‑140 (MQ=255)

                                                                                                          tCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGaa                           >  2:1557067/1‑140 (MQ=255)

                                                                                                          tCAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGaa                           >  1:1146055/1‑140 (MQ=255)

                                                                                                          tCAATATTCCGCTGGATCAACTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGaa                           >  2:1512279/1‑140 (MQ=255)

                                                                                                           cAATATTCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAag                          >  1:1055513/1‑140 (MQ=255)

                                                                                                                ttCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGtct                     <  1:1034726/140‑1 (MQ=255)

                                                                                                                ttCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGtct                     <  1:1275191/140‑1 (MQ=255)

                                                                                                                 tCCGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGtctc                    >  1:1601530/1‑140 (MQ=255)

                                                                                                                  ccGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCg                   <  1:410648/140‑1 (MQ=255)

                                                                                                                  ccGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCg                   <  1:282513/140‑1 (MQ=255)

                                                                                                                   cGCTGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGACCCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGc                  <  2:2459247/140‑1 (MQ=255)

                                                                                                                      tGGATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTAACTGGCGCGTCAGGTGAACCCTGACAAGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGt               >  1:1869169/1‑140 (MQ=255)

                                                                                                                        gATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGTTa             >  1:1402944/1‑140 (MQ=255)

                                                                                                                        gATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGTTa             >  2:1814507/1‑140 (MQ=255)

                                                                                                                        gATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGTTa             >  2:326626/1‑140 (MQ=255)

                                                                                                                        gATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGTTa             >  2:214514/1‑140 (MQ=255)

                                                                                                                        gATCAGCTTTCAGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGCCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGttt             >  2:164376/1‑139 (MQ=255)

                                                                                                                                  cagccagcATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGt               >  1:2088570/1‑128 (MQ=255)

                                                                                                                                  cagccagcATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGt               <  2:2088570/128‑1 (MQ=255)

                                                                                                                                  cagccagcATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGTTACTAtccgtcc   <  1:214514/140‑1 (MQ=255)

                                                                                                                                  cagccagcATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGTTACTAtccgtcc   >  1:998904/1‑140 (MQ=255)

                                                                                                                                  cagccagcATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGTTACTAtccgtcc   >  2:2087720/1‑140 (MQ=255)

                                                                                                                                   aGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGTTACTAtccgtccg  >  1:866679/1‑140 (MQ=255)

                                                                                                                                   aGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGTTACTAtccgtccg  >  2:515556/1‑140 (MQ=255)

                                                                                                                                   aGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGTTACTAtccgtccg  >  2:764725/1‑140 (MQ=255)

                                                                                                                                   aGCCAGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGTTACTAtccgtccg  >  2:1133909/1‑140 (MQ=255)

                                                                                                                                   aGCCAGCATTAACACCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGTTACTAtccgtccg  >  2:843811/1‑140 (MQ=255)

TTAGCGGTGAGCGTGCCGGTAAAAGCGATTTGGGCTGACCCGAAAGAAGTGCATGACGCTGGCGGTATCAGCGTCGGTGACCGCTGGAAGGCGCTGGCTAACGCGCTCAATATTCCGCTGGATCAGCTTTCAGCCCGCATTAACGCCAACCCGAAAGGGCGCTTTATTTATCTGGCGCGTCAGGTGAACCCTGACATGGCGGACTACATCAAAAAACTGAAACTGCCGGGGATTCATCTGCGTGAAGAGTCTCGCCGTTACTATCCGTCCG  >  NC_000913/91656‑91926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A