Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	92,024	G→T	P204P (CCG→CCT)	ftsI →	peptidoglycan DD‑transpeptidase FtsI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	92,024	0	G	T	100.0%	340.4 / NA	98	P204P (CCG→CCT)	ftsI	peptidoglycan DD‑transpeptidase FtsI
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (49/49); total (49/49)

ATCTGCGTGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCGGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGTTTATCGCGAACTGAAC  >  NC_000913/91891‑92159

aTCTGCGTGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAg                                                                                                                                   >  1:2026625/1‑140 (MQ=255)

aTCTGCGTGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAg                                                                                                                                   <  1:1539401/140‑1 (MQ=255)

aTCTGCGTGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAg                                                                                                                                   >  1:582820/1‑140 (MQ=255)

    gCGTGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCa                                                                                                                               <  1:1859810/140‑1 (MQ=255)

    gCGTGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCa                                                                                                                               <  1:1541450/140‑1 (MQ=255)

    gCGTGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCa                                                                                                                               <  2:1215463/140‑1 (MQ=255)

     ggTGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCAt                                                                                                                              <  2:857981/139‑1 (MQ=255)

     cGTGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCAt                                                                                                                              >  1:1816473/1‑140 (MQ=255)

     cGTGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCAt                                                                                                                              <  1:84822/140‑1 (MQ=255)

     cGTGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGAGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCAt                                                                                                                              >  2:543102/1‑140 (MQ=255)

     cGTGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGA‑‑GCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCAttt                                                                                                                            >  2:1686344/1‑139 (MQ=255)

       tGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATtg                                                                                                                            >  1:1951359/1‑140 (MQ=255)

       tGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATtg                                                                                                                            <  1:596149/140‑1 (MQ=255)

       tGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATtg                                                                                                                            <  2:1303041/140‑1 (MQ=255)

             gTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTa                                                                                                                      <  1:906648/140‑1 (MQ=255)

               ctcGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATtgt                                                                                                                           >  2:1448747/1‑133 (MQ=255)

               ctcGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATtgt                                                                                                                           <  1:1448747/133‑1 (MQ=255)

               ctcGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTaaa                                                                                                                    <  1:785792/140‑1 (MQ=255)

               ctcGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTaaa                                                                                                                    >  1:383502/1‑140 (MQ=255)

               ctcGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTaaa                                                                                                                    <  2:323989/140‑1 (MQ=255)

               ctcGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTaaa                                                                                                                    <  1:1665396/140‑1 (MQ=255)

               ctcGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTaaa                                                                                                                    >  2:430008/1‑140 (MQ=255)

                tcGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAg                                                                                                                   >  1:2118928/1‑140 (MQ=255)

                tcGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAg                                                                                                                   <  1:592492/140‑1 (MQ=255)

                  gCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGAc                                                                                                                 >  1:1857321/1‑140 (MQ=255)

                  gCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGAc                                                                                                                 >  1:404455/1‑140 (MQ=255)

                      ttACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCt                                                                                                             >  1:1691194/1‑140 (MQ=255)

                            tccgtccgGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTc                                                                                                       >  1:1617447/1‑140 (MQ=255)

                            tccgtccgGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTc                                                                                                       >  1:28328/1‑140 (MQ=255)

                             ccgtctgGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTcg                                                                                                      <  1:151083/140‑1 (MQ=255)

                              cgtccgGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTcgc                                                                                                     >  2:769343/1‑140 (MQ=255)

                               gtccgGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTcgcg                                                                                                    <  2:1816473/140‑1 (MQ=255)

                               gtccgGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTcgcg                                                                                                    <  1:1614886/140‑1 (MQ=255)

                               gtccgGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTcgcg                                                                                                    >  1:1880287/1‑140 (MQ=255)

                               gtccgGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTcgcg                                                                                                    <  1:246006/140‑1 (MQ=255)

                               gtccgGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTcgcg                                                                                                    <  2:2118928/140‑1 (MQ=255)

                               gtccgGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGCGCGTAAAGACCGCTATGGTcgcg                                                                                                    <  1:9598/140‑1 (MQ=255)

                                tccgGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGt                                                                                                   >  1:1932856/1‑140 (MQ=255)

                                    gCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAAtt                                                                                               >  1:992114/1‑140 (MQ=255)

                                      gAAGTGACTGCTCACCTCATCGGCTTTAGTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGa                                                                                             <  2:2026625/140‑1 (MQ=255)

                                       aaGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGaa                                                                                            <  1:34069/140‑1 (MQ=255)

                                            aCTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGatat                                                                                       <  2:1951359/140‑1 (MQ=255)

                                                    ccTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTa                                                                               >  1:28282/1‑140 (MQ=255)

                                                      tCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACt                                                                             >  1:411917/1‑140 (MQ=255)

                                                      tCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGAGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACt                                                                             <  1:543102/140‑1 (MQ=255)

                                                      acATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACt                                                                             <  2:65744/139‑1 (MQ=255)

                                                        aTCGGCGTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGa                                                                           <  2:1291783/140‑1 (MQ=255)

                                                             cTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGcc                                                                      >  1:583167/1‑140 (MQ=255)

                                                             cTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGcc                                                                      <  2:1157484/140‑1 (MQ=255)

                                                               ttACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAg                                                                    >  2:148344/1‑140 (MQ=255)

                                                               ttACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAg                                                                    >  2:1303636/1‑140 (MQ=255)

                                                               ttACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAg                                                                    >  2:918360/1‑140 (MQ=255)

                                                                      cGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAgcgc                                                             >  1:742062/1‑140 (MQ=255)

                                                                       gTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGca                                                            >  2:1206113/1‑140 (MQ=255)

                                                                       gTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGca                                                            <  2:28328/140‑1 (MQ=255)

                                                                       gTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGca                                                            >  1:707964/1‑140 (MQ=255)

                                                                              gTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTg                                                     <  1:918360/140‑1 (MQ=255)

                                                                              gTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTg                                                     <  2:707964/140‑1 (MQ=255)

                                                                              gTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTg                                                     <  2:72243/140‑1 (MQ=255)

                                                                              gTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAACGCACAACCTg                                                     <  2:1691194/140‑1 (MQ=255)

                                                                              atCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTg                                                     <  2:176712/139‑1 (MQ=255)

                                                                                 aaGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGgcg                                                  <  2:28282/140‑1 (MQ=255)

                                                                                 aaGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGgcg                                                  <  2:856124/140‑1 (MQ=255)

                                                                                 aaGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGgcg                                                  <  2:1932856/140‑1 (MQ=255)

                                                                                 aaGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGgcg                                                  <  2:404455/140‑1 (MQ=255)

                                                                                   gggATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCt                                                <  2:383502/140‑1 (MQ=255)

                                                                                   gggATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCt                                                <  1:1206113/140‑1 (MQ=255)

                                                                                   gggATTGA‑‑GCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGa                                              <  1:1686344/140‑1 (MQ=255)

                                                                                   aggATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCt                                                <  2:582820/139‑1 (MQ=255)

                                                                                      aTTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAg                                             >  2:498203/1‑140 (MQ=255)

                                                                                        tGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTa                                           >  1:1837774/1‑140 (MQ=255)

                                                                                         gAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTTAGTAt                                          >  1:1514993/1‑140 (MQ=255)

                                                                                         gAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTAt                                          >  2:1574028/1‑140 (MQ=255)

                                                                                         gAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTAt                                          >  2:638914/1‑140 (MQ=255)

                                                                                         gAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTAt                                          >  1:251232/1‑140 (MQ=255)

                                                                                               gTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATtgatga                                    >  2:1770993/1‑140 (MQ=255)

                                                                                                 tGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAAc                                  <  1:814019/140‑1 (MQ=255)

                                                                                                    gaagaGTTTCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGcc                               >  2:92383/1‑140 (MQ=255)

                                                                                                          tttCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAgg                         <  2:992114/140‑1 (MQ=255)

                                                                                                            tCGATAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGgcg                       <  1:638914/140‑1 (MQ=255)

                                                                                                            tCGATAAATCGCTTACCAGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGgcg                       >  2:1562272/1‑140 (MQ=255)

                                                                                                             cGATAAATGGCCTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGgcgc                      >  1:1576314/1‑140 (MQ=255)

                                                                                                               aTAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTg                    >  2:871376/1‑140 (MQ=255)

                                                                                                               aTAAATGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGGAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTg                    >  1:1507048/1‑140 (MQ=255)

                                                                                                                 aaaTGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGt                  <  2:583167/140‑1 (MQ=255)

                                                                                                                  aaTGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGtt                 >  2:1882390/1‑140 (MQ=255)

                                                                                                                  aaTGGCTTACCGGGCAGCCTGGCGAGCGCATTGTGCGTAAAGACCGCTATTGTCGCGTACTTGAAGATCTTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCGGAGTATTGATGAACGCCTGCAGCCGCTGGtt                 >  2:875628/1‑140 (MQ=255)

                                                                                                                    tGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGTTTa               >  1:1427372/1‑140 (MQ=255)

                                                                                                                    tGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGTTTa               >  2:1131245/1‑140 (MQ=255)

                                                                                                                    tGGCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGTTTa               >  1:76903/1‑140 (MQ=255)

                                                                                                                      gCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGTTTATc             <  2:251232/140‑1 (MQ=255)

                                                                                                                      gCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGTTTATc             <  1:1574028/140‑1 (MQ=255)

                                                                                                                      gCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGTTTATc             <  2:305622/140‑1 (MQ=255)

                                                                                                                      gCTTACCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTAATGACAGCCAGGCCGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGTTTATc             <  2:1857321/140‑1 (MQ=255)

                                                                                                                          aCCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGTTTATCGCGa         >  1:688197/1‑140 (MQ=255)

                                                                                                                          aCCGGGCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGTTTATCGCGa         >  1:761410/1‑140 (MQ=255)

                                                                                                                              ggCAGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGTTTATCGCGAACTg     >  2:1657834/1‑140 (MQ=255)

                                                                                                                                 aGCCTGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGTTTATCGCGAACTGaac  >  2:723777/1‑140 (MQ=255)

ATCTGCGTGAAGAGTCTCGCCGTTACTATCCGTCCGGCGAAGTGACTGCTCACCTCATCGGCTTTACTAACGTCGATAGTCAAGGGATTGAGGGCGTTGAGAAGAGTTTCGATAAATGGCTTACCGGGCAGCCGGGTGAGCGCATTGTGCGTAAAGACCGCTATGGTCGCGTAATTGAAGATATTTCTTCTACTGACAGCCAGGCAGCGCACAACCTGGCGCTGAGTATTGATGAACGCCTGCAGGCGCTGGTTTATCGCGAACTGAAC  >  NC_000913/91891‑92159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A