Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 94,294 G→T A377S (GCG→TCG)  murE → UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00091394,2940GT100.0% 364.7 / NA 106A377S (GCG→TCG) murEUDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (51/55);  total (51/55)

Only 100 of 108 total aligned reads displayed.

AACCGCCGCGCGTCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTGCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTGACGGACGATAACCCGCGTACCGAAGAACCG  >  NC_000913/94158‑94428
                                                                                                                                        |                                                                                                                                      
aaCCGCCGCGCGTCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCgg                                                                                                                                     >  1:1150866/1‑140 (MQ=255)
   cgccgcGCGTCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCa                                                                                                                                  <  1:516256/140‑1 (MQ=255)
   cgccgcGCGTCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCa                                                                                                                                  >  2:20799/1‑140 (MQ=255)
   cgccgcGCGTCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCa                                                                                                                                  >  2:678104/1‑140 (MQ=255)
    gccgcGCGTCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCaa                                                                                                                                 <  1:240312/140‑1 (MQ=255)
     ccgcGCGTCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAg                                                                                                                                <  1:1082733/140‑1 (MQ=255)
     ccgcGCGTCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAg                                                                                                                                <  2:928846/140‑1 (MQ=255)
     ccgcGCGTCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAg                                                                                                                                >  1:1222337/1‑140 (MQ=255)
      cgcgcgTCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGc                                                                                                                               <  2:1532921/140‑1 (MQ=255)
        cgcgTCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCtg                                                                                                                             <  1:2072280/140‑1 (MQ=255)
        cgcgTCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCtg                                                                                                                             <  1:193880/140‑1 (MQ=255)
        cgcgTCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCtg                                                                                                                             <  1:1599105/140‑1 (MQ=255)
            tCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTgtggt                                                                                                                         <  2:580091/140‑1 (MQ=255)
            tCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTgtggt                                                                                                                         <  1:1396422/140‑1 (MQ=255)
            tCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTgtggt                                                                                                                         <  1:2129471/140‑1 (MQ=255)
            tCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTgtggt                                                                                                                         <  1:968295/140‑1 (MQ=255)
            tCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTgtggt                                                                                                                         <  2:1298104/140‑1 (MQ=255)
            tCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTgtggt                                                                                                                         <  2:138614/140‑1 (MQ=255)
            tCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTgtggt                                                                                                                         <  2:1573453/140‑1 (MQ=255)
             cTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTgtggtg                                                                                                                        <  1:1023347/140‑1 (MQ=255)
                      gTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTgg                                                                                                               <  1:239395/140‑1 (MQ=255)
                      gTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTgg                                                                                                               <  1:1497096/140‑1 (MQ=255)
                      gTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTgg                                                                                                               <  1:1450031/140‑1 (MQ=255)
                       tttGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGc                                                                                                              >  1:501483/1‑140 (MQ=255)
                        ttGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCt                                                                                                             <  2:1561422/140‑1 (MQ=255)
                                 tATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCg                                                                                                    >  2:1041832/1‑140 (MQ=255)
                                        gtgtTCACTGCGCCAGGCAAACCGACGGT‑GTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGAt                                                                                            >  2:1147547/1‑140 (MQ=255)
                                         tgtTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGAACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGAt                                                                                            <  1:955106/140‑1 (MQ=255)
                                          gtTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATa                                                                                           <  2:1896130/140‑1 (MQ=255)
                                          gtTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATa                                                                                           >  1:1399175/1‑140 (MQ=255)
                                          gtTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATa                                                                                           >  1:2103502/1‑140 (MQ=255)
                                          gtTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATa                                                                                           >  1:1853275/1‑140 (MQ=255)
                                           ttCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATaa                                                                                          >  1:555968/1‑140 (MQ=255)
                                           ttCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATaa                                                                                          >  2:1713406/1‑140 (MQ=255)
                                           ttCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATaa                                                                                          >  1:836895/1‑140 (MQ=255)
                                           ttCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATaa                                                                                          >  1:1723462/1‑140 (MQ=255)
                                           ttCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATaa                                                                                          <  1:671220/140‑1 (MQ=255)
                                                tGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTa                                                                                     >  2:606038/1‑140 (MQ=255)
                                                tGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTa                                                                                     >  2:76283/1‑140 (MQ=255)
                                                tGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTa                                                                                     >  1:1670781/1‑140 (MQ=255)
                                                 gcgcCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTaa                                                                                    <  2:776077/140‑1 (MQ=255)
                                                 gcgcCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTaa                                                                                    <  1:537109/140‑1 (MQ=255)
                                                 gcgcCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTaa                                                                                    <  1:1041832/140‑1 (MQ=255)
                                                  cgcCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAg                                                                                   >  1:325919/1‑140 (MQ=255)
                                                  cgcCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAg                                                                                   >  2:1439813/1‑140 (MQ=255)
                                                  cgcCAGGCAAACCGACGGTGGCGGTGGATTACGCGCATACGCCGGATGCACTGGACAAAGTCTTACAGTCGGCGCGACTGCACTGTGCGGGCAAGCTGTGGTGTGTCTTTGGCTGCGGTCGCAATCGCGATAAAGGTaat                                                                                   >  2:2071355/1‑139 (MQ=255)
                                                   gcCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGc                                                                                  >  1:479266/1‑140 (MQ=255)
                                                   gcCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGc                                                                                  <  2:876388/140‑1 (MQ=255)
                                                   gcCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGc                                                                                  <  2:214646/140‑1 (MQ=255)
                                                    ccAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGc                                                                                  <  2:1787766/139‑1 (MQ=255)
                                                     cAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTaa                                                                                    <  1:1475620/136‑1 (MQ=255)
                                                     cAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTaa                                                                                    >  2:1475620/1‑136 (MQ=255)
                                                     cAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGt                                                                                <  1:1985029/140‑1 (MQ=255)
                                                       ggCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATa                                                                                           <  2:2137858/127‑1 (MQ=255)
                                                       ggCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATa                                                                                           >  1:2137858/1‑127 (MQ=255)
                                                        gCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCa                                                                             <  2:1399175/140‑1 (MQ=255)
                                                           aaCCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTg                                                                          <  1:1439813/140‑1 (MQ=255)
                                                            aCCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGa                                                                         >  1:1489885/1‑140 (MQ=255)
                                                                   gtggtggtgGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGgcgc                                                                  <  1:1749909/140‑1 (MQ=255)
                                                                   gtggtggtgGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGgcgc                                                                  <  2:501483/140‑1 (MQ=255)
                                                                     ggtggtggATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCaa                                                                <  2:901392/140‑1 (MQ=255)
                                                                             aTTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGaa                                                        <  1:1147547/140‑1 (MQ=255)
                                                                             aTTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGaa                                                        <  1:513660/140‑1 (MQ=255)
                                                                              ttACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAag                                                       >  1:1888910/1‑140 (MQ=255)
                                                                              ttACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAag                                                       >  1:1605691/1‑140 (MQ=255)
                                                                                 cgcgCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGt                                                    >  1:600770/1‑140 (MQ=255)
                                                                                 cgcgCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGt                                                    >  2:1600220/1‑140 (MQ=255)
                                                                                   cgcATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGttt                                                  >  1:1111178/1‑140 (MQ=255)
                                                                                    gcATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTg                                                 >  1:1275418/1‑140 (MQ=255)
                                                                                      aTACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGc                                                <  2:1845055/139‑1 (MQ=255)
                                                                                      aTACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGc                                                >  1:1845055/1‑139 (MQ=255)
                                                                                      aTACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCt                                               >  1:1215089/1‑140 (MQ=255)
                                                                                       tACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTg                                              >  2:1975175/1‑140 (MQ=255)
                                                                                        aCGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGa                                             <  2:1489885/140‑1 (MQ=255)
                                                                                            cGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTg                                         <  1:555341/140‑1 (MQ=255)
                                                                                            cGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTg                                         >  2:1889788/1‑140 (MQ=255)
                                                                                               aTGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCg                                      <  2:1349924/140‑1 (MQ=255)
                                                                                                tGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCgg                                     <  2:1888910/140‑1 (MQ=255)
                                                                                                tGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCgg                                     >  1:964368/1‑140 (MQ=255)
                                                                                                    cTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCggtggt                                 >  2:95434/1‑140 (MQ=255)
                                                                                                     tGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGgtggtg                                >  2:1132220/1‑140 (MQ=255)
                                                                                                      ggAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCg                                      >  1:1649647/1‑133 (MQ=255)
                                                                                                      ggAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCg                                      <  2:1649647/133‑1 (MQ=255)
                                                                                                      ggAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTga                               >  1:468411/1‑140 (MQ=255)
                                                                                                       gAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTgac                              <  1:1826537/140‑1 (MQ=255)
                                                                                                        aaaaaGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCCGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGGgacc                             >  2:1910230/1‑139 (MQ=255)
                                                                                                            aGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCTCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTgacggacg                         >  2:1924930/1‑140 (MQ=255)
                                                                                                            aGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTgacggacg                         >  2:1765039/1‑140 (MQ=255)
                                                                                                            aGCCTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTgacggacg                         >  2:2082774/1‑140 (MQ=255)
                                                                                                              ccTTACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTGACGGACGAt                       <  2:479266/140‑1 (MQ=255)
                                                                                                                 tACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTGACGGACGATAAc                    >  2:1798303/1‑140 (MQ=255)
                                                                                                                 tACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTGACGGACGATAAc                    <  2:323430/140‑1 (MQ=255)
                                                                                                                 tACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGAGGTGAAGGACGATAAc                    >  1:1153933/1‑140 (MQ=255)
                                                                                                                 tACAGGCGGCGCGTCTGCACTGTTCGGGCAAGCTGTGGGGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTGACGGACGATAAc                    >  1:1218258/1‑140 (MQ=255)
                                                                                                                      gcggcgCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTGACGGACGATAACCcgcg               <  2:1670781/140‑1 (MQ=255)
                                                                                                                      gcggcgCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTGACGGACGATAACCcgcg               <  1:716714/140‑1 (MQ=255)
                                                                                                                      gcggcgCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTGACGGACGATAACCcgcg               <  1:1924930/140‑1 (MQ=255)
                                                                                                                      gcggcgCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTGACGGACGATAACCcgcg               <  2:1150866/140‑1 (MQ=255)
                                                                                                                        ggcgCGTCTGCACTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTGACGGACGATAACCCGCGTa             <  2:600770/140‑1 (MQ=255)
                                                                                                                                   aCTGTTCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTGACGGACGATAACCCGCGTACCGAAGAACcg  <  1:1600220/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                      
AACCGCCGCGCGTCTGCAACCGGTTTGCGGACGTATGGAAGTGTTCACTGCGCCAGGCAAACCGACGGTGGTGGTGGATTACGCGCATACGCCGGATGCACTGGAAAAAGCCTTACAGGCGGCGCGTCTGCACTGTGCGGGCAAGCTGTGGTGTGTCTTTGGCTGTGGTGGCGATCGCGATAAAGGTAAGCGTCCACTGATGGGCGCAATTGCCGAAGAGTTTGCTGACGTGGCGGTGGTGACGGACGATAACCCGCGTACCGAAGAACCG  >  NC_000913/94158‑94428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A