Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F48 I1 R1	62	147.6	5031800	99.1%	4986513	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	173,699	G→A	P395L (CCG→CTG)	hemL ←	glutamate‑1‑semialdehyde aminotransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	173,699	0	G	A	100.0%	412.5 / NA	115	P395L (CCG→CTG)	hemL	glutamate‑1‑semialdehyde aminotransferase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (58/57); total (58/57)

Only 100 of 115 total aligned reads displayed.

GATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACGGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACATGCCGCCAACGT  >  NC_000913/173563‑173834

gATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTg                                                                                                                                      >  2:581894/1‑140 (MQ=255)

 aTAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGc                                                                                                                                     <  2:1300754/140‑1 (MQ=255)

  aaaGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGcc                                                                                                                                    <  1:1583452/139‑1 (MQ=255)

    aGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAg                                                                                                                                  <  1:2121610/140‑1 (MQ=255)

    aGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAg                                                                                                                                  <  2:529431/140‑1 (MQ=255)

      gCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGt                                                                                                                                >  1:107548/1‑140 (MQ=255)

       cGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTa                                                                                                                               >  2:35628/1‑140 (MQ=255)

       cGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTa                                                                                                                               >  1:1734534/1‑140 (MQ=255)

       cGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTa                                                                                                                               >  2:1321037/1‑140 (MQ=255)

           cACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAaca                                                                                                                           >  1:1450510/1‑140 (MQ=255)

              gccgcATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCt                                                                                                                        <  2:706523/140‑1 (MQ=255)

              gccgcATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCt                                                                                                                        >  1:1683965/1‑140 (MQ=255)

                 gcATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCg                                                                                                                     >  1:1501863/1‑140 (MQ=255)

                   aTCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTc                                                                                                                   <  2:1683965/140‑1 (MQ=255)

                      agACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAg                                                                                                                <  2:699752/139‑1 (MQ=255)

                        aCAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGca                                                                                                              <  1:2266649/140‑1 (MQ=255)

                        aCAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGca                                                                                                              <  2:1697905/140‑1 (MQ=255)

                        aCAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGca                                                                                                              <  1:35628/140‑1 (MQ=255)

                            aCCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGcatcat                                                                                                          >  2:1972665/1‑140 (MQ=255)

                              cATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCatat                                                                                                        >  1:517512/1‑140 (MQ=255)

                               aTGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATg                                                                                                       >  2:1952498/1‑140 (MQ=255)

                                    ggATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGgaaga                                                                                                  <  2:163839/140‑1 (MQ=255)

                                    ggATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGgaaga                                                                                                  <  2:1450510/140‑1 (MQ=255)

                                     gATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGgaagaa                                                                                                 <  2:1503132/140‑1 (MQ=255)

                                      aTCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGaaa                                                                                                >  2:1298675/1‑140 (MQ=255)

                                       tCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAAc                                                                                               >  2:484330/1‑140 (MQ=255)

                                        cacaACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACg                                                                                              >  2:736885/1‑140 (MQ=255)

                                          caACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCt                                                                                            >  2:790798/1‑140 (MQ=255)

                                          caACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCt                                                                                            >  2:227518/1‑140 (MQ=255)

                                           aaCTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCtt                                                                                           >  2:1192010/1‑140 (MQ=255)

                                             cTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACTCCTTCGTCCAGCATCATATGGAAGAAACGCTTa                                                                                          <  1:1694297/139‑1 (MQ=255)

                                             cTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTa                                                                                          >  2:1694297/1‑139 (MQ=255)

                                               tCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAg                                                                                       >  1:525574/1‑140 (MQ=255)

                                                cGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGc                                                                                      >  1:1508669/1‑140 (MQ=255)

                                                cGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCGTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACATTCGCCCAGCATCATATGGAAGAAACGCTTAAAGc                                                                                      >  1:1168845/1‑140 (MQ=255)

                                                  cAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGt                                                                                    >  2:2219172/1‑140 (MQ=255)

                                                    aaCACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTc                                                                                  <  2:68634/140‑1 (MQ=255)

                                                      cacCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCa                                                                                <  1:1952498/140‑1 (MQ=255)

                                                      cacCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCa                                                                                <  1:1298675/140‑1 (MQ=255)

                                                       acCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCAc                                                                               >  1:445822/1‑140 (MQ=255)

                                                           gACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTca                                                                           <  1:1972665/140‑1 (MQ=255)

                                                             cGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTcaca                                                                         >  1:1388949/1‑140 (MQ=255)

                                                              gTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAg                                                                        <  2:1501863/140‑1 (MQ=255)

                                                               tGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGTGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAgg                                                                       <  2:1808129/140‑1 (MQ=255)

                                                               tGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAgg                                                                       <  2:1264984/140‑1 (MQ=255)

                                                                 cagcaTCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGcc                                                                     >  2:1664290/1‑140 (MQ=255)

                                                                   gcaTCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCAt                                                                   >  1:178595/1‑140 (MQ=255)

                                                                   gcaTCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCAt                                                                   <  1:1873264/140‑1 (MQ=255)

                                                                   gcaTCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCAt                                                                   <  1:1321037/140‑1 (MQ=255)

                                                                   gcaTCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCAt                                                                   <  1:227518/140‑1 (MQ=255)

                                                                     aTCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATca                                                                 <  1:581894/140‑1 (MQ=255)

                                                                     aTCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATca                                                                 <  1:845086/140‑1 (MQ=255)

                                                                      tCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATcac                                                                <  2:1734534/140‑1 (MQ=255)

                                                                         aTGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATc                                                             >  2:794602/1‑140 (MQ=255)

                                                                              gtTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGAt                                                        >  1:220754/1‑140 (MQ=255)

                                                                              gtTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGAt                                                        <  2:1508669/140‑1 (MQ=255)

                                                                                 aTTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGTAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGc                                                     <  1:2246445/140‑1 (MQ=255)

                                                                                 aTTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGc                                                     >  1:1048372/1‑140 (MQ=255)

                                                                                     atatCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGt                                                 >  1:558609/1‑140 (MQ=255)

                                                                                       atCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCa                                               <  1:1015874/140‑1 (MQ=255)

                                                                                            ccATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGAc                                          <  2:525574/140‑1 (MQ=255)

                                                                                            ccATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGAc                                          >  1:1028007/1‑140 (MQ=255)

                                                                                            ccATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGAc                                          >  1:266817/1‑140 (MQ=255)

                                                                                               tGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCCTCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCg                                       >  1:607480/1‑140 (MQ=255)

                                                                                               tGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCg                                       >  1:2056155/1‑140 (MQ=255)

                                                                                                   gtgCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGt                                   <  1:790798/140‑1 (MQ=255)

                                                                                                   gtgCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGt                                   <  2:1048372/140‑1 (MQ=255)

                                                                                                   gtgCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGt                                   <  2:445822/140‑1 (MQ=255)

                                                                                                   gtgCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGt                                   <  2:1028007/140‑1 (MQ=255)

                                                                                                    tgCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTc                                  >  2:502896/1‑140 (MQ=255)

                                                                                                    tgCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTc                                  >  2:747156/1‑140 (MQ=255)

                                                                                                    tgCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTc                                  >  2:1573635/1‑140 (MQ=255)

                                                                                                    tgCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTc                                  >  1:2379563/1‑140 (MQ=255)

                                                                                                    tgCGCCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTc                                  >  1:1510187/1‑140 (MQ=255)

                                                                                                      cgcCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCgg                                >  1:34373/1‑140 (MQ=255)

                                                                                                      cgcCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCgg                                >  2:35789/1‑140 (MQ=255)

                                                                                                       gcCACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGt                               <  2:1388949/140‑1 (MQ=255)

                                                                                                        ccACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTa                              <  1:2219172/140‑1 (MQ=255)

                                                                                                         cACGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAATGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTaa                             >  1:1157422/1‑140 (MQ=255)

                                                                                                           cGGACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAg                           >  1:1148350/1‑140 (MQ=255)

                                                                                                            ggACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGa                          <  2:517512/140‑1 (MQ=255)

                                                                                                            ggACATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGa                          <  1:747156/140‑1 (MQ=255)

                                                                                                              aCATAAAGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCTCGTCACGGACTCGGCGTCGGTAAAGaaa                        >  2:2374880/1‑140 (MQ=255)

                                                                                                                   aaGCCCGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATAcc                   >  2:376681/1‑140 (MQ=255)

                                                                                                                        cGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCTCGGACTCGGCGTCGGTAAAGAAAATACCGAACa              <  1:531535/140‑1 (MQ=255)

                                                                                                                        cGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGt                               >  2:256772/1‑123 (MQ=255)

                                                                                                                        cGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACa              >  1:1830711/1‑140 (MQ=255)

                                                                                                                        cGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACa              <  1:484330/140‑1 (MQ=255)

                                                                                                                        cGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACa              <  1:794602/140‑1 (MQ=255)

                                                                                                                        cGCTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACa              >  1:589624/1‑140 (MQ=255)

                                                                                                                          cTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACATg            >  2:720789/1‑140 (MQ=255)

                                                                                                                          cTTCAAACGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACATg            >  1:1628929/1‑140 (MQ=255)

                                                                                                                           ttCAAACGCTGACAGTGCCAGGTAAACGCCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACATgc           <  2:1148350/140‑1 (MQ=255)

                                                                                                                               aaCGCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACATgccgcc       <  1:1303627/140‑1 (MQ=255)

                                                                                                                                 agCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACATGCCGCCaa     <  2:2056155/139‑1 (MQ=255)

                                                                                                                                  gCTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACATGCCGCCAAc    <  2:2079316/140‑1 (MQ=255)

                                                                                                                                   cTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACATGCCGCCAACg   >  1:1444320/1‑140 (MQ=255)

                                                                                                                                   cTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACATGCCGCCAACg   <  1:35789/140‑1 (MQ=255)

                                                                                                                                   cTGACAGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACATGCCGCCAACg   <  2:1157422/140‑1 (MQ=255)

                                                                                                                                    cgACAGTCCCAGGTAAACACCTTCGTCCAGCTTCATATGGAAGAAACGCTTAAAGCGTTCCACGTCAAAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGACCATGCCGCTAACGt  <  1:992985/139‑1 (MQ=255)

GATAAGGCGTTCACGCCGCATCCGACAAACCATGCTGGATCACAACTTCGCAAACACCCGACGTGCAGCATCGATGGTGTTATTGATATCTTCCATGCTGTGCGCCACGGACATAAAGCCCGCTTCAAACGCTGACGGTGCCAGGTAAACACCTTCGTCCAGCATCATATGGAAGAAACGCTTAAAGCGTTCCACGTCACAGGCCATCACATCCTGATAGCACGTCACGGACTCGGCGTCGGTAAAGAAAATACCGAACATGCCGCCAACGT  >  NC_000913/173563‑173834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A