Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	177,462	G→T	P55T (CCG→ACG)	yadS ←	conserved inner membrane protein YadS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	177,462	0	G	T	100.0%	337.3 / NA	100	P55T (CCG→ACG)	yadS	conserved inner membrane protein YadS
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (45/55); total (45/55)

Only 100 of 102 total aligned reads displayed.

CCGCCAGACCAACGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGGGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGCTGTGC  >  NC_000913/177327‑177596

ccGCCAGACCAACGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCg                                                                                                                                    <  2:368593/140‑1 (MQ=255)

ccGCCAGACCAACGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCg                                                                                                                                    <  1:1719556/140‑1 (MQ=255)

ccGCCAGACCAACGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCg                                                                                                                                    >  1:1300369/1‑140 (MQ=255)

ccGCCAGACCAACGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCg                                                                                                                                    <  2:83450/140‑1 (MQ=255)

       aCCAACGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCa                                                                                                                             >  2:737306/1‑140 (MQ=255)

           aCGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAgcgc                                                                                                                         >  2:1894802/1‑140 (MQ=255)

           aCGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAgcgc                                                                                                                         >  1:252849/1‑140 (MQ=255)

           aCGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAgcg                                                                                                                          >  2:1388007/1‑139 (MQ=255)

           aCGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAgcg                                                                                                                          <  1:1388007/139‑1 (MQ=255)

            cGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGcc                                                                                                                        <  2:517042/140‑1 (MQ=255)

                 tCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCGACGACCAGAACGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTc                                                                                                                   <  2:1212426/140‑1 (MQ=255)

                 tCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTc                                                                                                                   >  1:1774013/1‑140 (MQ=255)

                 tCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTc                                                                                                                   >  1:932598/1‑140 (MQ=255)

                  ccAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCg                                                                                                                                    >  1:237485/1‑122 (MQ=255)

                  ccAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCg                                                                                                                                    <  2:237485/122‑1 (MQ=255)

                        ccGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAAtt                                                                                                            >  2:1666861/1‑140 (MQ=255)

                         cGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTg                                                                                                           <  2:1881535/140‑1 (MQ=255)

                           gCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTc                                                                                                         >  2:1710913/1‑140 (MQ=255)

                           gCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTc                                                                                                         >  2:1730164/1‑140 (MQ=255)

                           gCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTc                                                                                                         <  1:1613368/140‑1 (MQ=255)

                           gCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTc                                                                                                         >  1:532638/1‑140 (MQ=255)

                                aTCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCccgcc                                                                                                    <  2:869742/140‑1 (MQ=255)

                                aTCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCccgcc                                                                                                    <  1:486844/140‑1 (MQ=255)

                                aTCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCccgcc                                                                                                    <  2:1514484/140‑1 (MQ=255)

                                aTCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCccgcc                                                                                                    <  1:9011/140‑1 (MQ=255)

                                   cATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCgccgcc                                                                                                 >  1:1649958/1‑140 (MQ=255)

                                      tttGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTAc                                                                                              <  2:1183769/140‑1 (MQ=255)

                                          gTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCg                                                                                          <  2:932598/140‑1 (MQ=255)

                                          gTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCg                                                                                          >  2:1403705/1‑140 (MQ=255)

                                          gTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCg                                                                                          >  2:1427954/1‑140 (MQ=255)

                                                gTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTAcc                                                                                    <  2:1649958/140‑1 (MQ=255)

                                                 tCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCa                                                                                   <  1:1730164/140‑1 (MQ=255)

                                                 tCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCa                                                                                   <  2:1300369/140‑1 (MQ=255)

                                                   ttagctggcGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGGTCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACg                                                                                 <  2:160944/137‑1 (MQ=255)

                                                    tggctggcGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGc                                                                                >  2:770877/1‑140 (MQ=255)

                                                     ggctggcGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAACATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGcc                                                                               <  1:1252074/140‑1 (MQ=255)

                                                     ggctggcGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGcc                                                                               <  2:532638/140‑1 (MQ=255)

                                                     ggctggcGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGcc                                                                               <  1:533164/140‑1 (MQ=255)

                                                     ggctggcGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGcc                                                                               <  1:679428/140‑1 (MQ=255)

                                                      gctggcGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGccc                                                                              <  2:1243/140‑1 (MQ=255)

                                                      gctggcGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGccc                                                                              <  2:1838123/140‑1 (MQ=255)

                                                      gctggcGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGccc                                                                              <  1:320444/140‑1 (MQ=255)

                                                      gctggcGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGccc                                                                              <  1:1344257/140‑1 (MQ=255)

                                                           cgcACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTAc                                                                         >  2:378676/1‑140 (MQ=255)

                                                           cgcACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTAc                                                                         >  1:1400953/1‑140 (MQ=255)

                                                              aCCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAg                                                                      <  1:1078177/140‑1 (MQ=255)

                                                                  gCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAaca                                                                  <  1:610229/140‑1 (MQ=255)

                                                                  gCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAaca                                                                  <  1:1034971/140‑1 (MQ=255)

                                                                  gCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGACCCGCCGCCTACTGCGGTTACCACGCCCAGTACCTGAaca                                                                  >  2:1318637/1‑140 (MQ=255)

                                                                  gCACGATGGTCAGCATGCTGGTGACCATTGCAACGAACAGAGCGGTGGGATCTTTCACCAAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAaca                                                                  <  2:1069382/140‑1 (MQ=255)

                                                                        tGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCaaaa                                                            <  1:1128752/140‑1 (MQ=255)

                                                                        tGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCaaaa                                                            >  1:991748/1‑140 (MQ=255)

                                                                         ggTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAg                                                           <  1:770877/140‑1 (MQ=255)

                                                                          gTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAgg                                                          <  1:973742/140‑1 (MQ=255)

                                                                             aGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTc                                                       >  2:633830/1‑140 (MQ=255)

                                                                                   cTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCACGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACg                                                 <  1:971884/140‑1 (MQ=255)

                                                                                    tGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGc                                                >  2:1073838/1‑140 (MQ=255)

                                                                                      gTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCaa                                              >  2:1795929/1‑140 (MQ=255)

                                                                                         aCCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAAttt                                           >  1:2008278/1‑140 (MQ=255)

                                                                                          acATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAAtttt                                          <  2:1683425/139‑1 (MQ=255)

                                                                                            aTTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTcc                                        >  1:848408/1‑140 (MQ=255)

                                                                                             ttGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCg                                       >  2:1376529/1‑140 (MQ=255)

                                                                                              tGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCgg                                      >  2:1740385/1‑140 (MQ=255)

                                                                                              tGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCgg                                      >  1:133283/1‑140 (MQ=255)

                                                                                                cAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCt                                    >  2:1981805/1‑140 (MQ=255)

                                                                                                   cGACCAGATCGGTGGGTTCTTTTACCCAAAATACCGTGTCGTGATCCAGAGCCATGTCGTGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGTTAAc                                 >  2:987582/1‑140 (MQ=255)

                                                                                                     aCCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACaa                               >  2:921158/1‑140 (MQ=255)

                                                                                                     aCCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACaa                               <  1:1427954/140‑1 (MQ=255)

                                                                                                     aCCAGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACaa                               >  1:1030763/1‑140 (MQ=255)

                                                                                                        aGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAAc                            >  1:1877680/1‑140 (MQ=255)

                                                                                                        aGATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTGACCACGCCCAGTACCAGAACACCACAAGGGTCCATACGCAATTTTCCGGCTACCaaacc                            >  2:1455217/1‑138 (MQ=255)

                                                                                                         gATCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACg                           <  1:1548807/140‑1 (MQ=255)

                                                                                                          aTCGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGc                          <  1:1716974/140‑1 (MQ=255)

                                                                                                            cGGTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCg                        >  1:1363800/1‑140 (MQ=255)

                                                                                                              gTGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGga                      >  2:1979595/1‑140 (MQ=255)

                                                                                                               tGGGATCTTTCGCCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACGCCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCAGgag                     <  2:1400953/140‑1 (MQ=255)

                                                                                                               tGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGgag                     >  1:1628422/1‑140 (MQ=255)

                                                                                                               tGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGgag                     >  2:1121522/1‑140 (MQ=255)

                                                                                                               tGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGgag                     <  2:1774013/140‑1 (MQ=255)

                                                                                                               tGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGgag                     <  2:1744002/140‑1 (MQ=255)

                                                                                                               tGGGATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGgag                     <  1:484615/140‑1 (MQ=255)

                                                                                                                  gATCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGACCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATg                  >  2:1157481/1‑140 (MQ=255)

                                                                                                                    tCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGc                >  1:1257157/1‑140 (MQ=255)

                                                                                                                    tCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGc                >  1:1611247/1‑140 (MQ=255)

                                                                                                                    tCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGc                >  2:797278/1‑140 (MQ=255)

                                                                                                                    tCTTTCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGc                >  1:605614/1‑140 (MQ=255)

                                                                                                                       ttCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCaaa             >  1:697118/1‑140 (MQ=255)

                                                                                                                        tCACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAAt            >  1:225058/1‑140 (MQ=255)

                                                                                                                         cACCCAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATa           >  1:2045257/1‑140 (MQ=255)

                                                                                                                            ccAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCg        <  1:85572/140‑1 (MQ=255)

                                                                                                                             cAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGc       <  1:1376529/140‑1 (MQ=255)

                                                                                                                             cAAAATACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGc       <  1:921158/140‑1 (MQ=255)

                                                                                                                              aaaaTACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGCt      <  1:1597026/140‑1 (MQ=255)

                                                                                                                                 aTACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGCtgtg   <  2:605614/140‑1 (MQ=255)

                                                                                                                                 aTACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGCtgtg   <  2:1363800/140‑1 (MQ=255)

                                                                                                                                 aTACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGCtgtg   <  2:1611247/140‑1 (MQ=255)

                                                                                                                                  tACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGCTGTGc  <  1:938663/140‑1 (MQ=255)

                                                                                                                                  tACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGCTGTGc  <  1:1710913/140‑1 (MQ=255)

                                                                                                                                  tACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGCTGTGc  <  2:1877680/140‑1 (MQ=255)

                                                                                                                                  tACCGTGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGCTGTGc  <  2:1628422/140‑1 (MQ=255)

CCGCCAGACCAACGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGGGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGCTGTGC  >  NC_000913/177327‑177596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A