Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F48 I1 R1	62	147.6	5031800	99.1%	4986513	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	668,620	G→T	P32P (CCC→CCA)	rlmH ←	23S rRNA m(3)psi1915 methyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	668,620	0	G	T	100.0%	469.0 / NA	131	P32P (CCC→CCA)	rlmH	23S rRNA m(3)psi1915 methyltransferase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (71/60); total (71/60)

Only 100 of 134 total aligned reads displayed.

GGCTTGCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAAGGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGACGG  >  NC_000913/668483‑668755

ggCTTGCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAAtgg                                                                                                                                       >  2:1198852/1‑140 (MQ=255)

   ttGCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCat                                                                                                                                    <  1:676865/140‑1 (MQ=255)

    tGCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCata                                                                                                                                   >  1:2143649/1‑140 (MQ=255)

     gCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCatat                                                                                                                                  >  1:117180/1‑140 (MQ=255)

     gCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCatat                                                                                                                                  >  2:938686/1‑140 (MQ=255)

     gCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCatat                                                                                                                                  >  1:763954/1‑140 (MQ=255)

     gCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCatat                                                                                                                                  >  1:85890/1‑140 (MQ=255)

     gCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCatat                                                                                                                                  >  1:1288472/1‑140 (MQ=255)

     gCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCatat                                                                                                                                  >  2:1214077/1‑140 (MQ=255)

     gCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCatat                                                                                                                                  >  2:1620077/1‑140 (MQ=255)

     gCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCatat                                                                                                                                  >  2:581503/1‑140 (MQ=255)

     gCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCatat                                                                                                                                  >  1:1839588/1‑140 (MQ=255)

     gCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCatat                                                                                                                                  >  2:2333109/1‑140 (MQ=255)

     gCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCatat                                                                                                                                  >  2:245224/1‑140 (MQ=255)

      ccTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATc                                                                                                                                 >  1:1100535/1‑140 (MQ=255)

               tCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGaaa                                                                                                                        >  1:212994/1‑140 (MQ=255)

               tCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGaaa                                                                                                                        >  1:292170/1‑140 (MQ=255)

                cGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGaaaa                                                                                                                       >  2:259888/1‑140 (MQ=255)

                 gAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAac                                                                                                                      <  2:493441/140‑1 (MQ=255)

                 gAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAac                                                                                                                      <  1:1414876/140‑1 (MQ=255)

                 gAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAac                                                                                                                      <  2:1271820/140‑1 (MQ=255)

                 gAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAac                                                                                                                      <  2:1610626/140‑1 (MQ=255)

                   gggTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAacga                                                                                                                    <  2:1961488/140‑1 (MQ=255)

                     gTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAacgacg                                                                                                                  >  2:896061/1‑140 (MQ=255)

                     gTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAacgacg                                                                                                                  <  1:510433/140‑1 (MQ=255)

                     gTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAacgacg                                                                                                                  >  2:2328978/1‑140 (MQ=255)

                         cAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAgt                                                                                                              >  2:721433/1‑139 (MQ=255)

                         cAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGCATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAgg                                                                                                              >  1:2106560/1‑140 (MQ=255)

                           aTGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCTAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTa                                                                                                            <  2:1491603/140‑1 (MQ=255)

                           aTGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTTCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTa                                                                                                            <  2:1611771/140‑1 (MQ=255)

                           aTGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTa                                                                                                            <  2:1425585/140‑1 (MQ=255)

                              cGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTc                                                                                                         >  2:277971/1‑140 (MQ=255)

                              cGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTc                                                                                                         >  2:2025887/1‑140 (MQ=255)

                              cGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTc                                                                                                         >  2:386138/1‑140 (MQ=255)

                                 tttttGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGt                                                                                                      >  2:933764/1‑140 (MQ=255)

                                  ttttGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTa                                                                                                     <  2:2071459/140‑1 (MQ=255)

                                     tGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTaaaa                                                                                                  <  1:487597/140‑1 (MQ=255)

                                     tGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTaaaa                                                                                                  <  2:325263/140‑1 (MQ=255)

                                      gCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAAc                                                                                                 <  2:582563/140‑1 (MQ=255)

                                      gCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAAc                                                                                                 <  1:386138/140‑1 (MQ=255)

                                       ccTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAAcc                                                                                                <  1:259888/140‑1 (MQ=255)

                                       ccTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAAcc                                                                                                <  2:117180/140‑1 (MQ=255)

                                       ccTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAAcc                                                                                                <  1:938686/140‑1 (MQ=255)

                                           cGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGtt                                                                                            >  2:974238/1‑140 (MQ=255)

                                                 ccAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTAcc                                                                                      >  1:1088895/1‑140 (MQ=255)

                                                 ccAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTAcc                                                                                      <  1:2328978/140‑1 (MQ=255)

                                                      aTCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTc                                                                                 >  2:1800739/1‑140 (MQ=255)

                                                      aTCTGCTCACCCTCTTTGTCGAGCATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTc                                                                                 <  2:2106560/140‑1 (MQ=255)

                                                         tGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCgg                                                                              <  1:1745669/140‑1 (MQ=255)

                                                         tGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCgg                                                                              <  1:2025887/140‑1 (MQ=255)

                                                                ccTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTc                                                                       >  2:455150/1‑140 (MQ=255)

                                                                ccTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTc                                                                       >  2:2147589/1‑140 (MQ=255)

                                                                   ctTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGtt                                                                    >  1:1516897/1‑140 (MQ=255)

                                                                    tttGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTc                                                                   >  2:649251/1‑140 (MQ=255)

                                                                     ttGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTcc                                                                  >  1:698770/1‑140 (MQ=255)

                                                                     ttGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTcc                                                                  <  2:1839588/140‑1 (MQ=255)

                                                                     ttGTCAAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTcc                                                                  >  1:334285/1‑140 (MQ=255)

                                                                      tGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTccc                                                                 <  1:455150/140‑1 (MQ=255)

                                                                       gTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCa                                                                <  2:1115015/140‑1 (MQ=255)

                                                                       gTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCa                                                                >  1:1332044/1‑140 (MQ=255)

                                                                        tCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCAc                                                               >  2:1841017/1‑140 (MQ=255)

                                                                          gAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACgg                                                             >  1:558286/1‑140 (MQ=255)

                                                                          gAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACgg                                                             >  1:2035486/1‑140 (MQ=255)

                                                                          gAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACgg                                                             >  1:2288719/1‑140 (MQ=255)

                                                                           aGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGc                                                            >  2:1545845/1‑140 (MQ=255)

                                                                            gTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACT‑GGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGa                                                          <  1:764926/140‑1 (MQ=255)

                                                                              aTGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGAc                                                         >  1:1967967/1‑140 (MQ=255)

                                                                               tGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACa                                                        <  1:2333109/140‑1 (MQ=255)

                                                                                       aTGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAg                                                >  1:1909454/1‑140 (MQ=255)

                                                                                       aTGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAg                                                >  1:1266475/1‑140 (MQ=255)

                                                                                       aTGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAg                                                >  1:1983705/1‑140 (MQ=255)

                                                                                        tGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGc                                               <  2:2465479/140‑1 (MQ=255)

                                                                                          tCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCtt                                             <  2:1516897/140‑1 (MQ=255)

                                                                                          tCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCtt                                             <  2:763954/140‑1 (MQ=255)

                                                                                            cGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCa                                           <  2:2241862/140‑1 (MQ=255)

                                                                                              cATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTTGTTCCCACGGCGACAAGTTGCAGCTTCACg                                         >  1:657476/1‑140 (MQ=255)

                                                                                              cATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACg                                         >  1:2434193/1‑140 (MQ=255)

                                                                                              cATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACg                                         >  1:2397965/1‑140 (MQ=255)

                                                                                                 tCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCAt                                      <  2:435559/140‑1 (MQ=255)

                                                                                                  cTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCAtt                                     <  1:933764/140‑1 (MQ=255)

                                                                                                   ttGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTa                                    >  1:1554464/1‑140 (MQ=255)

                                                                                                        gcgTTTTCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTcc                               <  1:857209/140‑1 (MQ=255)

                                                                                                           ttttCCGGCCGGAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCaga                            >  1:1215962/1‑140 (MQ=255)

                                                                                                                 ggccggAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGttttt                      <  1:392689/140‑1 (MQ=255)

                                                                                                                 ggccggAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGttttt                      >  1:1878400/1‑140 (MQ=255)

                                                                                                                 ggccggAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGttttt                      <  2:2143649/140‑1 (MQ=255)

                                                                                                                 ggccggAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGttttt                      <  1:504686/140‑1 (MQ=255)

                                                                                                                  gccggAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTc                     <  2:1909454/140‑1 (MQ=255)

                                                                                                                  gccggAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTc                     <  1:997543/140‑1 (MQ=255)

                                                                                                                   ccggAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTcc                    >  1:466696/1‑140 (MQ=255)

                                                                                                                    aggAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCa                   <  2:2157098/139‑1 (MQ=255)

                                                                                                                      gAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGt                 <  1:1914147/140‑1 (MQ=255)

                                                                                                                      gAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGt                 <  2:1910517/140‑1 (MQ=255)

                                                                                                                      gAATTTCAATCAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGt                 <  2:85890/140‑1 (MQ=255)

                                                                                                                                cAGCTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGc       <  1:1256215/140‑1 (MQ=255)

                                                                                                                                   cTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGAc    >  1:647523/1‑140 (MQ=255)

                                                                                                                                   cTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGAc    >  1:2441778/1‑140 (MQ=255)

                                                                                                                                   cTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGAc    >  2:84423/1‑140 (MQ=255)

                                                                                                                                   cTCGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGAc    >  1:265952/1‑140 (MQ=255)

                                                                                                                                     cGAATGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGACgg  <  1:2008413/140‑1 (MQ=255)

GGCTTGCCTGGAATATCGAGGGTGACAATGCGGTTTTTGCCTGCGGCCGCCAACATCTGCTCACCCTCTTTGTCGAGTATGCGCTTGATGTCCGCATTCTTGCCGCGTTTTCCGGCCGGAATTTCAATCAGCTCGAAGGGCATATCTTTCGGAAAACGACGCAGGTACTCGGTAAAACCGGTTTGTACCCAGTCCGGCATTTTCGTTCCCACGGCGACAAGTTGCAGCTTCACGCATTAACTCCAGAGTTTTTCCAGTTCATACAGGCGACGG  >  NC_000913/668483‑668755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A