Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F48 I1 R1	62	147.6	5031800	99.1%	4986513	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	731,731	C→A	R717R (CGG→AGG)	rhsC →	rhs element protein RhsC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	731,731	0	C	A	100.0%	521.5 / NA	148	R717R (CGG→AGG)	rhsC	rhs element protein RhsC
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (72/76); total (72/76)

Only 100 of 150 total aligned reads displayed.

ACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGCGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACACCTGACGGTGCATCATCCGCAG  >  NC_000913/731594‑731865

aCGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAgg                                                                                                                                      <  1:1915473/140‑1 (MQ=255)

 cGGCCGCACACAGTGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGt                                                                                                                                     <  2:1919767/140‑1 (MQ=255)

   gCCGCACACAGTGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTgg                                                                                                                                   <  1:710355/140‑1 (MQ=255)

   gCCGCACACAGCGTTATCGCCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTAAATGGCGAAACCGCAGAGAGGTgg                                                                                                                                   <  1:2232913/140‑1 (MQ=255)

   gCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTgg                                                                                                                                   <  1:146901/140‑1 (MQ=37)

    ccGCACACAGCGTTATCACCACGTCCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCATCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGc                                                                                                                                  <  2:448523/140‑1 (MQ=255)

     cGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCa                                                                                                                                 >  2:1516507/1‑140 (MQ=37)

     cGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCa                                                                                                                                 >  2:1062082/1‑140 (MQ=37)

              cGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGa                                                                                                                        >  2:625696/1‑140 (MQ=37)

               gTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGaa                                                                                                                       >  1:419835/1‑140 (MQ=37)

                ttATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAAc                                                                                                                      >  1:2256592/1‑140 (MQ=37)

                    caccacGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCgg                                                                                                                  <  1:1047204/140‑1 (MQ=255)

                    caccacGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCgg                                                                                                                  <  2:1712096/140‑1 (MQ=255)

                    aaccacGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCgg                                                                                                                  <  2:1012689/139‑1 (MQ=255)

                      ccacGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCggct                                                                                                                >  1:2031535/1‑140 (MQ=255)

                        acGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCggctgg                                                                                                              >  1:1219144/1‑140 (MQ=255)

                        acGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCggctgg                                                                                                              >  1:371275/1‑140 (MQ=255)

                         cGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCggctggc                                                                                                             <  1:12904/140‑1 (MQ=255)

                            ccTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTga                                                                                                          <  1:2356733/140‑1 (MQ=255)

                             cTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCTCGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTgac                                                                                                         <  2:2317279/140‑1 (MQ=255)

                              tGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTgaca                                                                                                        <  1:1265413/140‑1 (MQ=255)

                                aCCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTgacaga                                                                                                      >  1:273921/1‑140 (MQ=255)

                                aCCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTgacaga                                                                                                      >  2:313148/1‑140 (MQ=255)

                                  cGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTgacagaca                                                                                                    <  1:1419417/140‑1 (MQ=255)

                                  cGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTgacagaca                                                                                                    <  1:493601/140‑1 (MQ=255)

                                     cAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCa                                                                                                 >  2:136703/1‑140 (MQ=255)

                                      aaaCTTTTCCGCAGCGATGATGAGGGGCTGGTCACCCACTGTCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATAACGAACGCGGCTGGCTGACAGACATCAg                                                                                                <  1:1186203/140‑1 (MQ=14)

                                      aaaCTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAg                                                                                                <  2:1900048/140‑1 (MQ=255)

                                               cGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAg                                                                                       >  1:1559149/1‑140 (MQ=255)

                                                 cAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCg                                                                                     >  1:2424442/1‑140 (MQ=255)

                                                  aGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGa                                                                                    >  2:1685496/1‑140 (MQ=255)

                                                  aGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGa                                                                                    >  2:2049781/1‑140 (MQ=255)

                                                    cGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAg                                                                                  >  1:1639580/1‑140 (MQ=255)

                                                    cGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAg                                                                                  >  2:458774/1‑140 (MQ=255)

                                                      aGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAggg                                                                                <  2:419835/140‑1 (MQ=255)

                                                        gATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCa                                                                              >  1:334634/1‑140 (MQ=255)

                                                        gATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCa                                                                              <  1:1495003/140‑1 (MQ=255)

                                                        gATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCa                                                                              <  2:334634/140‑1 (MQ=255)

                                                             ggggCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCggg                                                                         <  2:651144/140‑1 (MQ=255)

                                                             ggggCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCggg                                                                         <  1:2049781/140‑1 (MQ=255)

                                                              gggCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGt                                                                        >  1:1941448/1‑140 (MQ=255)

                                                                gCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGa                                                                      <  1:313148/140‑1 (MQ=255)

                                                                gCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGa                                                                      <  2:1941448/140‑1 (MQ=255)

                                                                gCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGa                                                                      <  1:580245/140‑1 (MQ=255)

                                                                 cTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGAGAc                                                                     >  1:1987635/1‑140 (MQ=255)

                                                                  tGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACg                                                                    <  1:840549/140‑1 (MQ=255)

                                                                  tGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACg                                                                    <  1:1516507/140‑1 (MQ=255)

                                                                  tGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACg                                                                    >  2:840549/1‑140 (MQ=255)

                                                                  tGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACg                                                                    <  2:886411/140‑1 (MQ=255)

                                                                  tGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACg                                                                    <  1:543812/140‑1 (MQ=255)

                                                                   ggTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACgg                                                                   >  1:1439866/1‑140 (MQ=255)

                                                                     tCACCCACTGGCACTATGACGAAGCAGACCGCCTCACTCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGAAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTg                                                                 <  2:2256592/140‑1 (MQ=255)

                                                                     tCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTg                                                                 <  2:309949/140‑1 (MQ=255)

                                                                       aCCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCa                                                               <  2:1430272/140‑1 (MQ=255)

                                                                         ccACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACt                                                             <  1:2085197/140‑1 (MQ=255)

                                                                             tGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTacag                                                         >  2:554651/1‑137 (MQ=0)

                                                                              ggCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGt                                                        >  1:967487/1‑140 (MQ=255)

                                                                              ggCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGt                                                        <  1:1824250/140‑1 (MQ=255)

                                                                               gCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGtt                                                       >  1:560630/1‑140 (MQ=255)

                                                                               gCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGtt                                                       >  1:1930318/1‑140 (MQ=255)

                                                                                cACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTa                                                      <  1:625696/140‑1 (MQ=255)

                                                                                  cTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGGAGTATGACGAACGCGGCTGGCTGAAAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATg                                                    <  2:2185899/140‑1 (MQ=255)

                                                                                  atATGACGAAGCAGACCGCCTCACGCAGCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATg                                                    <  1:2083728/139‑1 (MQ=255)

                                                                                   tATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGa                                                   >  1:951708/1‑140 (MQ=255)

                                                                                     tGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACa                                                 >  1:2375599/1‑140 (MQ=255)

                                                                                     tGACGAAGCAGACCGCCTCACGCACCGCACCGGGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACa                                                 >  1:1720978/1‑140 (MQ=255)

                                                                                          aaGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTaaa                                            >  2:2433700/1‑140 (MQ=255)

                                                                                             cAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGgc                                         >  1:247122/1‑140 (MQ=255)

                                                                                               gACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGgccg                                       >  1:1389947/1‑140 (MQ=255)

                                                                                               gACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGgccg                                       >  1:457620/1‑140 (MQ=255)

                                                                                                aCCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGgccgc                                      <  2:967487/140‑1 (MQ=255)

                                                                                                aCCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGAATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACAGGGTGACGGTGCACTATGGTTATGACAGTAAAGgccgc                                      <  2:46324/140‑1 (MQ=255)

                                                                                                 ccGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGgccgcc                                     >  1:2443966/1‑140 (MQ=255)

                                                                                                  cGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCt                                    >  2:638304/1‑140 (MQ=255)

                                                                                                   gCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTc                                   >  2:1828966/1‑140 (MQ=255)

                                                                                                    ccTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATGAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCg                                  <  1:1490340/140‑1 (MQ=255)

                                                                                                    ccTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCg                                  <  2:2020005/140‑1 (MQ=255)

                                                                                                     cTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGc                                 >  2:2381354/1‑140 (MQ=255)

                                                                                                     cTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGc                                 <  2:247122/140‑1 (MQ=255)

                                                                                                       cACGCACCGCACCGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCa                               >  1:510519/1‑140 (MQ=255)

                                                                                                         ggcaccgcaccGTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGt                             <  2:139485/139‑1 (MQ=255)

                                                                                                              cgcaccgTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAaca                        <  2:598817/140‑1 (MQ=255)

                                                                                                              cgcaccgTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAaca                        >  2:2060948/1‑140 (MQ=255)

                                                                                                              cgcaccgTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAaca                        <  2:471074/140‑1 (MQ=255)

                                                                                                              cgcaccgTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCGGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAaca                        >  2:1542217/1‑140 (MQ=255)

                                                                                                               gcaccgTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAacac                       >  1:1874600/1‑140 (MQ=255)

                                                                                                               gcaccgTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAacac                       >  1:1618374/1‑140 (MQ=255)

                                                                                                                   cgTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACACCTGa                   <  1:1685496/140‑1 (MQ=255)

                                                                                                                    gTGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACACCTGAc                  <  2:1987635/140‑1 (MQ=255)

                                                                                                                     tGAATGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACACCTGACg                 >  2:1641534/1‑140 (MQ=255)

                                                                                                                       aaTGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACACCTGACGGt               <  1:1042183/140‑1 (MQ=255)

                                                                                                                       aaTGGCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACACCTGACGGt               <  2:560630/140‑1 (MQ=255)

                                                                                                                          ggCGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACACCTGACGGTGct            >  2:920313/1‑139 (MQ=255)

                                                                                                                            cGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACAcc                      >  1:877495/1‑128 (MQ=255)

                                                                                                                            cGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACAcc                      <  2:877495/128‑1 (MQ=255)

                                                                                                                            cGAAACCGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACACCTGACGGTGcatc          >  2:1168578/1‑140 (MQ=255)

                                                                                                                                 cctcAGAGAGGTGGCAGTATGACGAACGCGGCTGGGTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACACCTGACGGTGCATCATCCg     <  2:987407/137‑1 (MQ=255)

                                                                                                                                 ccGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACACCTGACGGTGCATCATCCg     <  1:873439/140‑1 (MQ=255)

                                                                                                                                 ccGCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACACCTGACGGTGCATCATCCg     <  1:312921/140‑1 (MQ=255)

                                                                                                                                   gCAGAGAGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCCCTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACACCTGACGGTGCATCATCCGCa   <  2:1720978/140‑1 (MQ=255)

ACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGGCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAATGGCGAAACCGCAGAGCGGTGGCAGTATGACGAACGCGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGACGGTGCACTATGGTTATGACAGTAAAGGCCGCCTCGCCAGTGAACACCTGACGGTGCATCATCCGCAG  >  NC_000913/731594‑731865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A