Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	742,050	C→A	M169I (ATG→ATT)	dtpD ←	dipeptide:H(+) symporter DtpD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	742,050	0	C	A	98.6%	235.6 / ‑2.8	71	M169I (ATG→ATT)	dtpD	dipeptide:H(+) symporter DtpD
Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (29/41); total (29/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.66e-01

TCCCCAGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCCATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGTTGGCTCATACAGCTCGCCGAGCA  >  NC_000913/741915‑742186

tCCCCAGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCg                                                                                                                                      >  1:1865130/1‑140 (MQ=255)

  cccAGTTCGGCAGGGGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCGGCGGGTATGAGTGAAATGACGATGGCCACATAAGAAAATGACCGGAGCCGCGGTGGTGCGAACCGCCGCCAGGCCAAAGCCAAGCGcc                                                                                                                                    <  2:503497/140‑1 (MQ=255)

  cccAGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGcc                                                                                                                                    <  2:2103187/140‑1 (MQ=255)

  cccAGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGcc                                                                                                                                    <  1:726600/140‑1 (MQ=255)

  cccAGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGcc                                                                                                                                    <  1:77302/140‑1 (MQ=255)

  cccAGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGcc                                                                                                                                    <  1:422020/140‑1 (MQ=255)

  cccAGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGcc                                                                                                                                    <  1:90313/140‑1 (MQ=255)

  cccAGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGcc                                                                                                                                    <  1:1475542/140‑1 (MQ=255)

  cccAGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGcc                                                                                                                                    >  1:1143877/1‑140 (MQ=255)

  cccAGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGcc                                                                                                                                    <  1:1104905/140‑1 (MQ=255)

  cccAGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGcc                                                                                                                                    <  1:699655/140‑1 (MQ=255)

  cccAGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACACAACAATCTGACCCGACCCGCGATCATGCTAACCGCCAACAGGACAAAGCCAATCGcc                                                                                                                                    <  1:2021282/140‑1 (MQ=255)

    cAGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGC‑GGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAg                                                                                                                                 <  2:939855/140‑1 (MQ=255)

     aGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAg                                                                                                                                 <  1:214185/140‑1 (MQ=255)

     aGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAg                                                                                                                                 <  2:623376/140‑1 (MQ=255)

      gTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGc                                                                                                                                <  2:1897490/140‑1 (MQ=255)

       ttCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCt                                                                                                                               >  2:1214684/1‑140 (MQ=255)

        tCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTg                                                                                                                              <  1:524345/140‑1 (MQ=255)

        tCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTg                                                                                                                              <  1:917104/140‑1 (MQ=255)

            cAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTAct                                                                                                                          <  1:764644/140‑1 (MQ=255)

                agaAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGCCCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCCATCGCCCAGCTGTACTCTTc                                                                                                                      <  2:1865902/140‑1 (MQ=255)

                agaAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTc                                                                                                                      <  1:1130846/140‑1 (MQ=255)

                 gaAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTcc                                                                                                                     >  1:133262/1‑140 (MQ=255)

                  aaaGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCACCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCt                                                                                                                    <  1:63200/140‑1 (MQ=255)

                      tttGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGc                                                                                                                <  1:1214684/140‑1 (MQ=255)

                      tttGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGc                                                                                                                <  1:692238/140‑1 (MQ=255)

                          tCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTaa                                                                                                            >  1:1003668/1‑140 (MQ=255)

                          tCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTaa                                                                                                            >  1:1365925/1‑140 (MQ=255)

                           cgcacgcaGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAAc                                                                                                           <  2:1620707/140‑1 (MQ=255)

                             cacgcaGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACca                                                                                                         <  2:1365925/140‑1 (MQ=255)

                             cacgcaGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACca                                                                                                         <  2:2088489/140‑1 (MQ=255)

                             cacgcaGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACca                                                                                                         >  1:1111366/1‑140 (MQ=255)

                               cgcaGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACcaca                                                                                                       <  1:1441070/140‑1 (MQ=255)

                                      attttttGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATa                                                                                                <  2:767967/139‑1 (MQ=255)

                                        tttttGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAgg                                                                                              <  2:1344440/140‑1 (MQ=255)

                                          tttGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTg                                                                                            <  2:1111366/140‑1 (MQ=255)

                                          tttGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTg                                                                                            <  1:283400/140‑1 (MQ=255)

                                          tttGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTg                                                                                            <  2:1712026/140‑1 (MQ=255)

                                          tttGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTg                                                                                            <  2:652791/140‑1 (MQ=255)

                                          tttGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTg                                                                                            <  2:831547/140‑1 (MQ=255)

                                          tttGGTAACGCCCGGGGTATGAGTGAAATTACCAATGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTg                                                                                            <  2:1866524/140‑1 (MQ=255)

                                            tGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCg                                                                                          <  2:1790241/140‑1 (MQ=255)

                                            tGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCg                                                                                          >  1:1077542/1‑140 (MQ=255)

                                            tGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCg                                                                                          <  2:1143877/140‑1 (MQ=255)

                                              ttAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGat                                                                                        >  2:439587/1‑140 (MQ=255)

                                              ttAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGat                                                                                        >  1:1415514/1‑140 (MQ=255)

                                                aaCGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGataa                                                                                      <  2:866905/140‑1 (MQ=255)

                                                 aCGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGataat                                                                                     >  2:1735549/1‑140 (MQ=255)

                                                  cgccgcGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGataata                                                                                    <  2:1415514/140‑1 (MQ=255)

                                                     cgcgGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGAc                                                                                 <  1:439587/140‑1 (MQ=255)

                                                      gcgGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGAcc                                                                                <  2:1003668/140‑1 (MQ=255)

                                                                gtaaaaTGAGGATTGCCACATAAGAAAAGGACCAGCCCCGCGATCATGCCAACCGCCGCCAGGCAAAAGCCAATCGCCCAGCTGTCCTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTAcc                                                                      <  2:1205404/137‑1 (MQ=255)

                                                                  gAAATGACGATTGCCAAATAAGAAAATGACCAGACCCGCAATCATGCCACCCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTACCCACAGGCGATAGGTGCGATAATAGACCCCACGTTACccg                                                                    <  1:1845738/140‑1 (MQ=255)

                                                                  aaaaTGACGATTGCCACATAAGAAAATGACCAGCCCCGCGATCATGCCACCCGCCGCCAGGCCAAAGCCAACCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCCCGTTACccg                                                                    <  2:1324781/139‑1 (MQ=255)

                                                                  aaaaTGACGATTGCCACATAAGAAAATGACCACACCCGCGATCATGCCACCCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCGCGTTACccg                                                                    <  2:1077542/139‑1 (MQ=255)

                                                                  aaaaTGACGATGGCCACAAAAGAAAATGCCCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAACCGCACAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCCCGTTACccg                                                                    <  2:1790481/139‑1 (MQ=255)

                                                                    aaTGACGATTGCCAAAAAAAAAAATGACCAGCCCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACccgcc                                                                  <  1:1244629/140‑1 (MQ=255)

                                                                            ttGCCACATAAGAAAATGACAAGCCCCGCGATCATGCCACCCGCCGCCAGGCCAAAGCCAATCGCCAAGCTGTCCTCTTCCGGGCCGTAACCACAGGCGATAGGTGCAATAATAGCCCCCACTTTCCCCGCCGCATACAt                                                          <  2:991865/140‑1 (MQ=255)

                                                                              gCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAAGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCa                                                        >  2:1471188/1‑140 (MQ=255)

                                                                                            tGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCa                                          >  1:129215/1‑140 (MQ=255)

                                                                                             gACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCAt                                         >  1:720774/1‑140 (MQ=255)

                                                                                               ccAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCa                                       >  1:1135716/1‑140 (MQ=255)

                                                                                                 aGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCacg                                     >  1:889112/1‑140 (MQ=255)

                                                                                                 aGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCacg                                     >  2:324691/1‑140 (MQ=255)

                                                                                                   aCCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCacgac                                   >  1:1819108/1‑140 (MQ=255)

                                                                                                     ccGCGATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGAcgc                                 >  1:1513677/1‑140 (MQ=255)

                                                                                                       gcgATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCgg                               >  1:1498104/1‑140 (MQ=255)

                                                                                                        cgATCATGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGa                              >  1:1014727/1‑140 (MQ=255)

                                                                                                            aatcccACCCGCCCCCAGGCAAAACCAAACCGCCCAGCTGTACTCTCCCTGGGCGAAACCACAGGCGATGGGGGCAATAATAGACCCCACTTTCCCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCgg                          <  2:479235/136‑1 (MQ=255)

                                                                                                            aaTGCCACCCGCCGCCAGGCAAAACCAAATCCCCCAGCTGTCCTCTTCCGGGGCGAACCCACAGGCGATGGGGGCAAAAATAGACCCCACGTACCCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCgg                          <  2:720774/139‑1 (MQ=255)

                                                                                                             aTGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGt                         >  1:676193/1‑140 (MQ=255)

                                                                                                             aTGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGt                         >  1:173830/1‑140 (MQ=255)

                                                                                                             aTGCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGt                         >  1:1734409/1‑140 (MQ=255)

                                                                                                               gCCAACCGCCGCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGTTg                       >  2:1981122/1‑140 (MQ=255)

                                                                                                                    ccgccgCCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGTTGGCTCa                  >  2:2094294/1‑140 (MQ=255)

                                                                                                                     cgccgcCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGTTGGCTCAt                 >  1:308636/1‑140 (MQ=255)

                                                                                                                     cgccgcCAGGCCAAAGCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGTTGGCTCAt                 >  1:1043164/1‑140 (MQ=255)

                                                                                                                                   aGCCAATCGCCCAGCTGTCCTCTCCCTGGGCGTACCCCCAGGCGATAGGTGCGATAATAGCCCCCCCGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGTTGGCTCATACAGCTCGCCGAGc   <  2:749697/140‑1 (MQ=255)

                                                                                                                                    gCCAATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGTTGGCTCATACAGCTCGCCGAGCa  >  2:682356/1‑140 (MQ=255)

TCCCCAGTTCGGCAGGAGAAAGTTTGTCGCACGCAGTACTTTTTTGTTAACGCCGCGGGTATGAGTGAAATGACGATTGCCACATAAGAAAATGACCAGACCCGCGATCATGCCAACCGCCGCCAGGCCAAAGCCCATCGCCCAGCTGTACTCTTCCTGGGCGTAACCACAGGCGATAGGTGCGATAATAGACCCCACGTTACCCGCCGCATACATCAGCGAGAAACCGCCATCACGACGCGGATCGGTTGGCTCATACAGCTCGCCGAGCA  >  NC_000913/741915‑742186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A