Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A20 F48 I1 R1 52 61.9 2103308 98.8% 2078068 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 751,704 C→A V156F (GTC→TTC)  ybgQ ← putative fimbrial usher protein YbgQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913751,7040CA97.1% 238.5 / ‑0.3 69V156F (GTC→TTC) ybgQputative fimbrial usher protein YbgQ
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base A (32/35);  total (33/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

TATTAAGCTGGTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGACACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAAC  >  NC_000913/751569‑751838
                                                                                                                                       |                                                                                                                                      
tattaAGCTGGTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCg                                                                                                                                    <  2:669912/140‑1 (MQ=255)
    aaGCTGGTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCaa                                                                                                                                <  1:657649/140‑1 (MQ=255)
     aGCTGGTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAac                                                                                                                               <  1:74151/140‑1 (MQ=255)
       cTGGTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGACACCGGCAacac                                                                                                                             >  1:136003/1‑140 (MQ=255)
       cTGGTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAacac                                                                                                                             >  2:983541/1‑140 (MQ=255)
       cTGGTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAacac                                                                                                                             >  2:955616/1‑140 (MQ=255)
       cTGGTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAacac                                                                                                                             >  2:706037/1‑140 (MQ=255)
       cTGGTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAacac                                                                                                                             >  1:688218/1‑140 (MQ=255)
       cTGGTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAacac                                                                                                                             >  1:939952/1‑140 (MQ=255)
        tGGTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACAcc                                                                                                                            <  1:471454/140‑1 (MQ=255)
         ggTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGTTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACct                                                                                                                           <  1:243426/140‑1 (MQ=255)
         ggTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACct                                                                                                                           >  1:535296/1‑140 (MQ=255)
          gTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACctt                                                                                                                          >  2:207321/1‑140 (MQ=255)
          gTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACctt                                                                                                                          >  2:613202/1‑140 (MQ=255)
           tAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACcttc                                                                                                                         <  1:955616/140‑1 (MQ=255)
           tAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACcttc                                                                                                                         >  2:914840/1‑140 (MQ=255)
             aTCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACcttctt                                                                                                                       <  1:100734/140‑1 (MQ=255)
                aCTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTcc                                                                                                                    <  2:67025/140‑1 (MQ=255)
                  tGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCAt                                                                                                                  <  2:81615/140‑1 (MQ=255)
                    cGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGt                                                                                                                >  2:390090/1‑140 (MQ=255)
                    cGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGt                                                                                                                >  1:848412/1‑140 (MQ=255)
                    cGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGt                                                                                                                >  1:115591/1‑140 (MQ=255)
                    cGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAACTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGt                                                                                                                >  2:1001740/1‑140 (MQ=255)
                          cgcCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAggg                                                                                                          >  2:456499/1‑140 (MQ=255)
                            ccATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAggggg                                                                                                        >  2:455660/1‑140 (MQ=255)
                            ccATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAggggg                                                                                                        >  2:340179/1‑140 (MQ=255)
                              aTGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGa                                                                                                      >  2:5297/1‑140 (MQ=255)
                                gCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACCCCTTCTTTCCATGTAGAGGGGGGAGc                                                                                                    <  2:739058/140‑1 (MQ=255)
                                  cccGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGccc                                                                                                  <  2:1010583/140‑1 (MQ=255)
                                     ggCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGt                                                                                               >  1:423374/1‑140 (MQ=255)
                                          tAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCt                                                                                          <  1:825230/140‑1 (MQ=255)
                                          tAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCt                                                                                          <  2:423374/140‑1 (MQ=255)
                                          tAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCt                                                                                          <  1:287222/140‑1 (MQ=255)
                                           aaTTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTg                                                                                         <  1:706037/140‑1 (MQ=255)
                                               ccGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTg                                                                                     <  1:455660/140‑1 (MQ=255)
                                                    ggTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACg                                                                                <  1:207321/140‑1 (MQ=255)
                                                    ggTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACg                                                                                <  2:939952/140‑1 (MQ=255)
                                                    ggTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACg                                                                                <  1:613202/140‑1 (MQ=255)
                                                    ggTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACg                                                                                <  1:456499/140‑1 (MQ=255)
                                                    ggTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACg                                                                                <  1:983541/140‑1 (MQ=255)
                                                    ggTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACg                                                                                <  1:914840/140‑1 (MQ=255)
                                                    ggTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAACTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACg                                                                                <  1:1001740/140‑1 (MQ=255)
                                                         cGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACgccagc                                                                           <  1:923188/140‑1 (MQ=255)
                                                              gCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGc                                                                      <  2:848412/140‑1 (MQ=255)
                                                                aTTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCtt                                                                    >  1:766670/1‑140 (MQ=255)
                                                                aTTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCtt                                                                    >  1:379677/1‑140 (MQ=255)
                                                                  tCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGc                                                                  >  2:939348/1‑140 (MQ=255)
                                                                  tCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGc                                                                  >  2:979378/1‑140 (MQ=255)
                                                                   aaGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGGAAACAAGTTGCAATCCGTCAGGAAACCGGCACCAACTTCTATCCATGTAGAGGGGAGAGCCCTGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCg                                                                 <  2:921332/139‑1 (MQ=255)
                                                                      gTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGaa                                                              <  1:979378/140‑1 (MQ=255)
                                                                                ctgctgcCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGTCTTGCGGAATACTAATAtt                                                    >  2:39483/1‑140 (MQ=255)
                                                                                     gcCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGtt                                               <  2:688218/140‑1 (MQ=255)
                                                                                       cGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGc                                             >  2:508179/1‑140 (MQ=255)
                                                                                               gggCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGc                                     <  1:620727/140‑1 (MQ=255)
                                                                                                ggCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCt                                    >  1:374136/1‑140 (MQ=255)
                                                                                                    gTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGACACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGAt                                <  2:136003/140‑1 (MQ=255)
                                                                                                    gTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGAt                                <  2:651296/140‑1 (MQ=255)
                                                                                                    gTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGAt                                <  2:115591/140‑1 (MQ=255)
                                                                                                            tgGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTg                        <  2:766670/140‑1 (MQ=255)
                                                                                                            tgGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTg                        <  1:131036/140‑1 (MQ=255)
                                                                                                            tgGCAAACAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTg                        <  1:508179/140‑1 (MQ=255)
                                                                                                                aaaCAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAaga                    <  2:155665/140‑1 (MQ=255)
                                                                                                                   cAAGTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCa                 >  1:378006/1‑140 (MQ=255)
                                                                                                                      gTTGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCAttt              <  1:39483/140‑1 (MQ=255)
                                                                                                                       ttGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCAtttt             >  2:366168/1‑139 (MQ=255)
                                                                                                                        tGTAATCCATCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCa            >  1:54264/1‑140 (MQ=255)
                                                                                                                                aTCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGa    >  2:660178/1‑140 (MQ=255)
                                                                                                                                aTCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGa    >  2:1018639/1‑140 (MQ=255)
                                                                                                                                aTCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGa    >  1:466845/1‑140 (MQ=255)
                                                                                                                                 tCAGGAAACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTCCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGaa   >  1:8237/1‑140 (MQ=255)
                                                                                                                                  cAGGAAACAGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCGAGTTATCTGCGGGCCACGACATCCCGGCTTGCGGAATACTAATATTCTGTTGCTGATTGGTTTGATCGAAATTGACGAGCATTTCAGGACGGGAAc  >  2:694460/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                      
TATTAAGCTGGTAATCACTGCGTAAGCGCCATGCCCCGGCGTTAATTCCGGCGGTACCGTAGGCATTCAGGTTAGTGCTGCTGCTGCCGTCCTGTGGGCGGTAGCTGCTGGCAAACAAGTTGTAATCCATCAGGACACCGGCAACACCTTCTTTCCATGTAGAGGGGGGAGCCCAGTTTTCTGAGTGCCACGCCAGCCAGGCTTGCGGAATACTAATATTCAGTTGCTGATTGGCTTGATCGAAATTGAAGAGCATTTCAGGTCGGGAAC  >  NC_000913/751569‑751838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A