Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	753,875	G→T	F198L (TTC→TTA)	gltA ←	citrate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	753,875	0	G	T	100.0%	433.6 / NA	126	F198L (TTC→TTA)	gltA	citrate synthase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (71/55); total (71/55)

Only 100 of 128 total aligned reads displayed.

AGCGGTACGCACGGTGGAGGTAGAGGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGAT  >  NC_000913/753743‑754008

aGCGGTACGCACGGTGGAGGTAGAGGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTAc                                                                                                                                <  1:229502/140‑1 (MQ=255)

aGCGGTACGCACGGTGGAGGTAGAGGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTAc                                                                                                                                >  2:1755727/1‑140 (MQ=255)

aGCGGTACGCACGGTGGAGGTAGAGGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTAc                                                                                                                                <  2:679016/140‑1 (MQ=255)

aGCGGTACGCACGGTGGAGGTAGAGGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTAc                                                                                                                                <  2:1832584/140‑1 (MQ=255)

     tACGCACGGTGGAGGTAGAGGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCg                                                                                                                           <  2:83884/140‑1 (MQ=255)

                     agagGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTgc                                                                                                           <  1:1340825/140‑1 (MQ=255)

                      gagGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTgcg                                                                                                          <  2:178196/140‑1 (MQ=255)

                      gagGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTgcg                                                                                                          <  1:1313305/140‑1 (MQ=255)

                      gagGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTgcg                                                                                                          <  1:1755727/140‑1 (MQ=255)

                      gagGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTgcg                                                                                                          >  2:227571/1‑140 (MQ=255)

                      gagGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTgcg                                                                                                          <  1:1475982/140‑1 (MQ=255)

                       agGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTgcgc                                                                                                         >  1:1611309/1‑140 (MQ=255)

                       agGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTgcgc                                                                                                         <  1:363153/140‑1 (MQ=255)

                       agGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTgcgc                                                                                                         <  1:850070/140‑1 (MQ=255)

                            ttCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTa                                                                                                    >  1:339570/1‑140 (MQ=255)

                              cTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTaaa                                                                                                  >  2:1088334/1‑140 (MQ=255)

                                gTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACa                                                                                                <  1:1015778/140‑1 (MQ=255)

                                   cATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAAt                                                                                             >  1:205574/1‑140 (MQ=255)

                                     aggTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATTCGGTTCGCACGGCGGGGAGAACATCATATGCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATgg                                                                                           <  2:1012501/139‑1 (MQ=255)

                                          aGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGAc                                                                                      <  1:1562274/140‑1 (MQ=255)

                                           gCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGAcc                                                                                     >  2:1520875/1‑140 (MQ=255)

                                           gCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGAcc                                                                                     >  1:1809797/1‑140 (MQ=255)

                                            cGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCa                                                                                    >  1:1258148/1‑140 (MQ=255)

                                                 aGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAAC‑AATGGCTGACCAATGGaa                                                                              >  2:961207/1‑140 (MQ=255)

                                                   gATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAAt                                                                             <  2:1543899/140‑1 (MQ=255)

                                                   gATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAAt                                                                             <  2:1468840/140‑1 (MQ=255)

                                                   gATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAAt                                                                             <  2:1487255/140‑1 (MQ=255)

                                                   gATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAAt                                                                             <  2:1809797/140‑1 (MQ=255)

                                                   gATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAAt                                                                             <  2:1878183/140‑1 (MQ=255)

                                                      cAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACt                                                                          >  2:1500672/1‑140 (MQ=255)

                                                        gAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACttt                                                                        >  2:669657/1‑139 (MQ=255)

                                                        gAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTg                                                                        >  1:1903250/1‑140 (MQ=255)

                                                             cGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATATGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAaca                                                                   >  1:1178811/1‑140 (MQ=255)

                                                             cGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAaca                                                                   >  1:70270/1‑140 (MQ=255)

                                                             cGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAaca                                                                   >  1:1019049/1‑140 (MQ=255)

                                                             cGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAaca                                                                   >  1:1958370/1‑140 (MQ=255)

                                                             cGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAaca                                                                   >  2:706033/1‑140 (MQ=255)

                                                             cGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGAAAACAAATGGCTGACCAATGGAATACTTGTAaca                                                                   >  1:1763686/1‑140 (MQ=255)

                                                              ggTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAAt                                                                             >  2:2082338/1‑129 (MQ=255)

                                                              ggTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAacac                                                                  >  1:532929/1‑140 (MQ=255)

                                                               gTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAAcaca                                                                 >  1:301599/1‑140 (MQ=255)

                                                                tCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAAt                                                                             <  1:1839589/127‑1 (MQ=255)

                                                                tCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATAc                                                                           >  2:1521678/1‑129 (MQ=255)

                                                                tCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACAt                                                                >  1:2033942/1‑140 (MQ=255)

                                                                tCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACAt                                                                >  1:502642/1‑140 (MQ=255)

                                                                tCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACAt                                                                >  1:1822006/1‑140 (MQ=255)

                                                                   aTAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGGGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATcgc                                                             >  1:7680/1‑140 (MQ=255)

                                                                     aGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCgg                                                           >  1:372874/1‑140 (MQ=255)

                                                                       cACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGcc                                                         <  2:1352142/140‑1 (MQ=255)

                                                                          gTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATg                                                      >  2:2113864/1‑140 (MQ=255)

                                                                          gTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATg                                                      >  1:1319579/1‑140 (MQ=255)

                                                                          gTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATg                                                      >  2:1290037/1‑140 (MQ=255)

                                                                          gTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGAAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATg                                                      >  2:1750186/1‑140 (MQ=255)

                                                                           ttCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATgg                                                     <  1:1414112/140‑1 (MQ=255)

                                                                            tCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGt                                                    >  2:100897/1‑140 (MQ=255)

                                                                                 aaTCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCa                                               <  2:1611309/140‑1 (MQ=255)

                                                                                 aaTCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCa                                               <  2:502642/140‑1 (MQ=255)

                                                                                 aaTCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCa                                               <  1:97406/140‑1 (MQ=255)

                                                                                     ggATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACAAATCGCGGCCATGGTCGGCAtttt                                           <  1:2028635/140‑1 (MQ=255)

                                                                                      gATTGACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTc                                          >  2:536215/1‑140 (MQ=255)

                                                                                      gATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTc                                          >  2:2099952/1‑140 (MQ=255)

                                                                                      gATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTc                                          >  2:357859/1‑140 (MQ=255)

                                                                                      gATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCAAATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTc                                          >  1:1137319/1‑140 (MQ=255)

                                                                                               cATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGAcagcagc                                 >  2:675261/1‑139 (MQ=255)

                                                                                               cATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAgg                                 <  2:301599/140‑1 (MQ=255)

                                                                                               cATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAgg                                 <  1:2011005/140‑1 (MQ=255)

                                                                                               cATACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAgg                                 <  1:669657/140‑1 (MQ=255)

                                                                                                 tACGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCg                               >  1:875515/1‑140 (MQ=255)

                                                                                                   cGGTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAAC‑AATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGaa                            <  1:961207/140‑1 (MQ=255)

                                                                                                     gTTCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAAc                           <  2:800000/140‑1 (MQ=255)

                                                                                                      ttCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAAcg                          >  1:1776676/1‑140 (MQ=255)

                                                                                                      ttCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAAcg                          >  1:1936933/1‑140 (MQ=255)

                                                                                                      ttCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAAcg                          >  2:1877027/1‑140 (MQ=255)

                                                                                                       tCGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAAcgc                         >  1:1071202/1‑140 (MQ=255)

                                                                                                        cGCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAAcgcg                        >  2:1453518/1‑140 (MQ=255)

                                                                                                         gCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCgg                       >  1:687882/1‑140 (MQ=255)

                                                                                                         gCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCgg                       <  2:339570/140‑1 (MQ=255)

                                                                                                         gCACGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCgg                       <  2:236972/140‑1 (MQ=255)

                                                                                                            cGGCGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCaa                    >  1:1912736/1‑140 (MQ=255)

                                                                                                               cGTGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAAttt                 <  1:1125259/140‑1 (MQ=255)

                                                                                                                 tGGAGAACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCa               <  1:1453518/140‑1 (MQ=255)

                                                                                                                   gagaACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACg             <  2:777360/140‑1 (MQ=255)

                                                                                                                   gagaACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACg             <  2:967449/140‑1 (MQ=255)

                                                                                                                   gagaACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACg             <  1:1762921/140‑1 (MQ=255)

                                                                                                                   gagaACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACg             <  2:1258148/140‑1 (MQ=255)

                                                                                                                   gagaACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACg             <  2:1807772/140‑1 (MQ=255)

                                                                                                                     gaACATCATATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGt           <  1:2113864/140‑1 (MQ=255)

                                                                                                                        catcatATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGAc        <  1:1526451/140‑1 (MQ=255)

                                                                                                                        catcatATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGAc        <  1:1245038/140‑1 (MQ=255)

                                                                                                                        aatcatATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGAc        <  2:1958370/139‑1 (MQ=255)

                                                                                                                         atcatATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGTTGACg       <  2:1936933/140‑1 (MQ=255)

                                                                                                                         atcatATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACg       >  1:1468377/1‑140 (MQ=255)

                                                                                                                         atcatATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACg       >  2:8876/1‑140 (MQ=255)

                                                                                                                         atcatATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACg       >  1:546946/1‑140 (MQ=255)

                                                                                                                           catATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAg     <  2:48828/140‑1 (MQ=255)

                                                                                                                           catATTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGCAAACAAATGGCTGAACACTGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAg     >  1:2138730/1‑140 (MQ=255)

                                                                                                                             tatTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGa   >  2:1862910/1‑140 (MQ=255)

                                                                                                                             tatTCAGTAAGTTACCGGCGAAGGAGAGATCGTTGCGCGGGAAAACAAATGGCTGACCAATGGAATACTTGTAACACACCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGACAATTTCACGGTGACGAggt   >  2:207401/1‑139 (MQ=255)

                                                                                                                              atTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGAt  >  2:540493/1‑140 (MQ=255)

                                                                                                                              atTCAGTAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGAt  >  2:1260906/1‑140 (MQ=255)

AGCGGTACGCACGGTGGAGGTAGAGGCGTTCTGTTCATGGTCAGCGTGCAGGATCAGAATACGGTCCATAGCACGTTCCAGAATCGGATTAACTTCATACGGTTCGCACGGCGTGGAGAACATCATATTCAGGAAGTTACCGGCGTAGGAGAGATCGTTGCGCGGGTAAACAAATGGCTGACCAATGGAATACTTGTAACACATCGCGGCCATGGTCGGCATTTTCGACAGCAGGCGGAACGCGGCAATTTCACGGTGACGAGGAT  >  NC_000913/753743‑754008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A