Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 147,151 G→T D62Y (GAC→TAC)  rpnC → recombination‑promoting nuclease RpnC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913147,1510GT98.5% 429.5 / ‑1.9 131D62Y (GAC→TAC) rpnCrecombination‑promoting nuclease RpnC
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base T (62/66);  total (64/67)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

Only 100 of 134 total aligned reads displayed.

TTTTAATGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGG  >  NC_000913/147014‑147286
                                                                                                                                         |                                                                                                                                       
ttttAATGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTAc                                                                                                                                       <  2:2032915/140‑1 (MQ=255)
ttttAATGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTAc                                                                                                                                       >  2:891340/1‑140 (MQ=255)
ttttAATGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTAc                                                                                                                                       <  2:30141/140‑1 (MQ=255)
ttttAATGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTAc                                                                                                                                       <  2:696562/140‑1 (MQ=255)
ttttAATGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTAc                                                                                                                                       >  1:1389949/1‑140 (MQ=255)
ttttAATGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTAc                                                                                                                                       <  1:863599/140‑1 (MQ=255)
    aaTGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGc                                                                                                                                   >  1:313543/1‑140 (MQ=255)
       gcatgcGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTAc                                                                                                                                       >  2:788977/1‑133 (MQ=255)
         atgcGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGGGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTAt                                                                                                                              >  1:1991097/1‑140 (MQ=255)
          tgcGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTAtt                                                                                                                             >  1:1081923/1‑140 (MQ=255)
                gaCGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGc                                                                                                                       <  1:521022/140‑1 (MQ=255)
                    gCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAAt                                                                                                                   >  2:1931846/1‑140 (MQ=255)
                     cTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTTCGTGCTCTATTCCGTGCAAATg                                                                                                                  >  1:1792422/1‑140 (MQ=255)
                     cTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAAtt                                                                                                                  >  2:157024/1‑139 (MQ=255)
                     cTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAAtt                                                                                                                  >  2:1659695/1‑139 (MQ=255)
                     cTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATg                                                                                                                  <  2:748394/140‑1 (MQ=255)
                         cgACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTCTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAgg                                                                                                              <  2:968292/140‑1 (MQ=255)
                          gACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAggg                                                                                                             <  2:1938810/140‑1 (MQ=255)
                          gACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAggg                                                                                                             <  2:1389949/140‑1 (MQ=255)
                               tCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATc                                                                                                        >  2:1569482/1‑140 (MQ=255)
                                cTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATcc                                                                                                       <  2:1296227/140‑1 (MQ=255)
                                  ggAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCg                                                                                                     <  1:1659695/140‑1 (MQ=255)
                                  ggAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCg                                                                                                     <  1:641029/140‑1 (MQ=255)
                                   gagaTACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCgg                                                                                                    <  1:1548006/140‑1 (MQ=255)
                                   gagaTACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCgg                                                                                                    <  2:611955/140‑1 (MQ=255)
                                    agaTACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGt                                                                                                   <  2:1432702/140‑1 (MQ=255)
                                        aCATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGA‑‑AGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTg                                                                                             >  1:891378/1‑140 (MQ=255)
                                         cATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCt                                                                                              >  2:1368207/1‑140 (MQ=255)
                                          aTTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTg                                                                                             <  2:313543/140‑1 (MQ=255)
                                            ttGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCa                                                                                           <  1:815896/140‑1 (MQ=255)
                                            ttGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCa                                                                                           <  1:554117/140‑1 (MQ=255)
                                             tGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTTGAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCAt                                                                                          >  2:1679456/1‑140 (MQ=255)
                                             tGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCAt                                                                                          >  2:461746/1‑140 (MQ=255)
                                               ccAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCAtgt                                                                                        <  2:1258712/140‑1 (MQ=255)
                                                 aGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCGGGGCAATCCCGGTTATCTGCAtgatg                                                                                      <  2:1854013/140‑4 (MQ=255)
                                                 aGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCAtgttt                                                                                      >  2:890327/1‑139 (MQ=255)
                                                 aGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCAtgttt                                                                                      >  2:735477/1‑139 (MQ=255)
                                                 aGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCAtgttg                                                                                      >  2:1536834/1‑140 (MQ=255)
                                                  gTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTg                                                                                             >  1:430176/1‑132 (MQ=255)
                                                   tGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGTAGAGGCACTGAAAGGACACAACACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTtgtg                                                                                    >  2:1429306/1‑140 (MQ=255)
                                                   tGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCAtgttgtt                                                                                    >  2:192034/1‑139 (MQ=255)
                                                   tGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTtgtg                                                                                    >  1:889834/1‑140 (MQ=255)
                                                    ggAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGa                                                                                   <  2:57607/140‑1 (MQ=255)
                                                        ttACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGa                                                                               >  1:119670/1‑140 (MQ=255)
                                                         tACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGGAGAAAGCCTGAAAGGACACAGCACGTACGTGCTATATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGaa                                                                              <  1:1642352/140‑1 (MQ=255)
                                                            gcgAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAacac                                                                           <  1:1536834/140‑1 (MQ=255)
                                                            gcgAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAacac                                                                           <  1:890327/140‑1 (MQ=255)
                                                             cgAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACAcc                                                                          >  2:393107/1‑140 (MQ=255)
                                                                   ttGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAaagca                                                                    >  2:1176938/1‑140 (MQ=255)
                                                                           tCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGAt                                                            <  1:1536250/140‑1 (MQ=255)
                                                                           tCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGAt                                                            <  1:1894612/140‑1 (MQ=255)
                                                                            cAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATa                                                           >  1:1686092/1‑140 (MQ=255)
                                                                            cAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATa                                                           >  1:649607/1‑140 (MQ=255)
                                                                            aaaCACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATa                                                           <  2:119670/139‑1 (MQ=255)
                                                                                 cGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGaaa                                                      <  1:1716110/140‑1 (MQ=255)
                                                                                    ttCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATg                                                   >  1:303621/1‑140 (MQ=255)
                                                                                       aTTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGcc                                                >  2:778904/1‑140 (MQ=255)
                                                                                       aTTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGcc                                                >  2:1720257/1‑140 (MQ=255)
                                                                                              gTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCa                                         >  2:18612/1‑140 (MQ=255)
                                                                                              gTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCa                                         <  1:778904/140‑1 (MQ=255)
                                                                                              gTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCa                                         <  1:2126674/140‑1 (MQ=255)
                                                                                              gTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCa                                         >  2:449679/1‑140 (MQ=255)
                                                                                                cGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCatt                                       >  2:230576/1‑139 (MQ=255)
                                                                                                cGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCatt                                       >  2:1811002/1‑139 (MQ=255)
                                                                                                cGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCatg                                       <  1:449679/140‑1 (MQ=255)
                                                                                                cGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCatg                                       <  2:1378429/140‑1 (MQ=255)
                                                                                                 ggggAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTTCGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCatga                                      >  2:385382/1‑140 (MQ=255)
                                                                                                  gggAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCatgat                                     >  1:1288733/1‑140 (MQ=255)
                                                                                                  gggAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCatgat                                     >  1:193259/1‑140 (MQ=255)
                                                                                                  gggAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCatgat                                     >  1:901050/1‑140 (MQ=255)
                                                                                                  gggAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCatgat                                     >  1:442805/1‑140 (MQ=255)
                                                                                                  gggAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTTCTCTATTCCGTGCAAAAGCAGGGCAATTCCGGTTATCTGCATGTTGTGCTTTAACACCAAAGCAAGGCGGGTAAGAAAATGGCCTTTCGCctgat                                     >  2:2043677/1‑140 (MQ=255)
                                                                                                   ggAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCatgatg                                    <  1:1739529/140‑1 (MQ=255)
                                                                                                   ggAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCatgatg                                    <  1:1883210/140‑1 (MQ=255)
                                                                                                   ggAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCatgatg                                    <  1:1936722/140‑1 (MQ=255)
                                                                                                     aGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCg                                  <  2:253226/140‑1 (MQ=255)
                                                                                                         tCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTAt                              >  1:1659344/1‑140 (MQ=255)
                                                                                                         tCATTGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTAt                              >  2:939545/1‑140 (MQ=255)
                                                                                                            ttGAAGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCatgatg                                    >  1:1218456/1‑131 (MQ=255)
                                                                                                               aaGAGAGCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCtata                        >  2:1034830/1‑140 (MQ=255)
                                                                                                                agagagCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAg                       <  1:1811002/140‑1 (MQ=255)
                                                                                                                agagagCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAg                       <  2:1288733/140‑1 (MQ=255)
                                                                                                                    agCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAgccg                    <  2:814981/139‑1 (MQ=255)
                                                                                                                    agCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAgccg                    >  1:814981/1‑139 (MQ=255)
                                                                                                                     gCCTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAgccgcc                  <  2:889834/140‑1 (MQ=255)
                                                                                                                       cTGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCAt                >  2:1756692/1‑140 (MQ=255)
                                                                                                                        tGAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATg               <  1:1720257/140‑1 (MQ=255)
                                                                                                                         gAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGc              <  1:1034830/140‑1 (MQ=255)
                                                                                                                         gAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGc              >  1:13457/1‑140 (MQ=255)
                                                                                                                         gAAAGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGc              >  1:583325/1‑140 (MQ=255)
                                                                                                                          aaaGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCa             <  2:583325/140‑1 (MQ=255)
                                                                                                                          aaaGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCa             <  2:442805/140‑1 (MQ=255)
                                                                                                                          aaaGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCa             <  2:2069879/140‑1 (MQ=255)
                                                                                                                          aaaGGACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCa             <  1:18612/140‑1 (MQ=255)
                                                                                                                              gACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCa             >  1:751918/1‑136 (MQ=255)
                                                                                                                              gACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCgg         >  2:1715212/1‑140 (MQ=255)
                                                                                                                              gACACAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCgg         <  2:1485321/140‑1 (MQ=255)
                                                                                                                              aacacAGCACGTACGTGCTCTATTCCGTGCAAATGCAGGCCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGCTATTCTATAGCCGCCATGCACCgg         <  2:1728549/139‑1 (MQ=255)
                                                                                                                                     cACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTgg  >  1:1356205/1‑140 (MQ=255)
                                                                                                                                     cACGTACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTgg  >  1:1029510/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
TTTTAATGCATGCGGAGACGGCTCGCGACTTTCTGGAGATACATTTGCCAGTGGAATTACGCGAACTTTGTGACCTCAACACGCTTCATTTAGAGTCGGGGAGTTTCATTGAAGAGAGCCTGAAAGGACACAGCACGGACGTGCTCTATTCCGTGCAAATGCAGGGCAATCCCGGTTATCTGCATGTTGTGATTGAACACCAAAGCAAGCCGGATAAGAAAATGGCCTTTCGCATGATGCGTTATTCTATAGCCGCCATGCACCGGCATCTGG  >  NC_000913/147014‑147286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A