Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	155,025	G→T	I134I (ATC→ATA)	htrE ←	putative fimbrial usher protein HtrE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	155,025	0	G	T	100.0%	481.1 / NA	141	I134I (ATC→ATA)	htrE	putative fimbrial usher protein HtrE
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (88/53); total (88/53)

Only 100 of 143 total aligned reads displayed.

ACAACATGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGGATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATACAAGCCTGGGCGTTCT  >  NC_000913/154889‑155161

acaacaTGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGtata                                                                                                                                       >  2:370683/1‑140 (MQ=255)

   acaTGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAAtt                                                                                                                                    >  1:809641/1‑140 (MQ=255)

      tGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTcc                                                                                                                                 >  2:1118337/1‑140 (MQ=255)

      tGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTcc                                                                                                                                 >  1:896349/1‑140 (MQ=255)

      tGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTcc                                                                                                                                 >  2:73439/1‑140 (MQ=255)

         ccGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTc                                                                                                                              >  1:1798256/1‑140 (MQ=255)

           gCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCaa                                                                                                                            >  2:1530777/1‑140 (MQ=255)

            cATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCaaa                                                                                                                           >  1:666368/1‑140 (MQ=255)

            cATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCaaa                                                                                                                           >  2:322200/1‑140 (MQ=255)

              ttAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAAtt                                                                                                                         >  1:652764/1‑140 (MQ=255)

                aaTGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGa                                                                                                                       <  1:153926/140‑1 (MQ=255)

                  tGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAgg                                                                                                                     >  1:588694/1‑140 (MQ=255)

                   gCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGc                                                                                                                    >  1:1639029/1‑140 (MQ=255)

                           cccATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCg                                                                                                            <  1:1559210/140‑1 (MQ=255)

                            ccATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGa                                                                                                           <  2:1705068/140‑1 (MQ=255)

                             cATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAg                                                                                                          <  2:387834/140‑1 (MQ=255)

                                 aCGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGtt                                                                                                      <  2:1921736/140‑1 (MQ=255)

                                      ggATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATc                                                                                                 >  1:159814/1‑140 (MQ=255)

                                            aCATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGc                                                                                           >  1:40962/1‑140 (MQ=255)

                                            aCATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGc                                                                                           >  1:1558153/1‑140 (MQ=255)

                                               tAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAg                                                                                        >  1:1038697/1‑140 (MQ=255)

                                                  ttttGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAg                                                                                     >  2:739342/1‑140 (MQ=255)

                                                   tttGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGa                                                                                    >  2:338469/1‑140 (MQ=255)

                                                    ttGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGaa                                                                                   >  1:694013/1‑140 (MQ=255)

                                                    ttGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGaa                                                                                   <  2:666368/140‑1 (MQ=255)

                                                    ttGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGaa                                                                                   >  1:558378/1‑140 (MQ=255)

                                                       gTAATTTTTCATTACCCAGGCTTTAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACATAATCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACgg                                                                                >  2:1530828/1‑140 (MQ=255)

                                                       gTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACgg                                                                                >  1:1840987/1‑140 (MQ=255)

                                                       gTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACgg                                                                                >  2:1644366/1‑140 (MQ=255)

                                                       gTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACgg                                                                                >  1:1777356/1‑140 (MQ=255)

                                                         aaTTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCt                                                                              <  2:809641/140‑1 (MQ=255)

                                                          aTTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCtt                                                                             <  2:1840987/140‑1 (MQ=255)

                                                              ttCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTc                                                                         <  2:161156/140‑1 (MQ=255)

                                                                cATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGt                                                                       >  1:796372/1‑140 (MQ=255)

                                                                      ccAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGttattta                                                                 >  2:1267657/1‑140 (MQ=255)

                                                                         ggCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTatat                                                              <  2:1552396/140‑1 (MQ=255)

                                                                            ttGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCgg                                                           <  2:2047346/140‑1 (MQ=255)

                                                                             tGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCggg                                                          >  1:1984103/1‑140 (MQ=255)

                                                                             tGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCggg                                                          <  1:542620/140‑1 (MQ=255)

                                                                             tGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCggg                                                          <  2:878015/140‑1 (MQ=255)

                                                                              gAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCgg                                                           <  1:1124319/138‑1 (MQ=255)

                                                                              gAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGga                                                         <  2:1777356/140‑1 (MQ=255)

                                                                               aGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGgat                                                        >  2:1124603/1‑139 (MQ=255)

                                                                               aGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGgag                                                        >  1:903756/1‑140 (MQ=255)

                                                                               aGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGgag                                                        >  2:182937/1‑140 (MQ=255)

                                                                               aGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGgag                                                        >  2:1889345/1‑140 (MQ=255)

                                                                               aGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGgag                                                        >  2:1713210/1‑140 (MQ=255)

                                                                               aGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGgag                                                        >  1:1425245/1‑140 (MQ=255)

                                                                               aGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGgag                                                        >  1:2011742/1‑140 (MQ=255)

                                                                                ggAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGgaga                                                       <  2:1452993/140‑1 (MQ=255)

                                                                                  aaCGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAAt                                                     <  1:573577/140‑1 (MQ=255)

                                                                                    cGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCgg                                                           <  1:172239/132‑1 (MQ=255)

                                                                                    cGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTa                                                   >  1:258781/1‑140 (MQ=255)

                                                                                        tataTCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAatat                                               >  1:840443/1‑140 (MQ=255)

                                                                                          tatCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGa                                             <  1:1365249/140‑1 (MQ=255)

                                                                                               aGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTg                                        >  2:2040638/1‑140 (MQ=255)

                                                                                                gACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGc                                       >  1:845201/1‑140 (MQ=255)

                                                                                                gACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGc                                       >  2:431070/1‑140 (MQ=255)

                                                                                                gACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGc                                       <  2:652764/140‑1 (MQ=255)

                                                                                                gACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGACTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGc                                       >  1:148575/1‑140 (MQ=255)

                                                                                                 aCGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCa                                      >  1:2051542/1‑140 (MQ=255)

                                                                                                 aCGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCa                                      >  2:184109/1‑140 (MQ=255)

                                                                                                 aCGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCa                                      >  2:1069088/1‑140 (MQ=255)

                                                                                                 aCGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCa                                      >  1:381089/1‑140 (MQ=255)

                                                                                                 aCGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCa                                      <  1:73439/140‑1 (MQ=255)

                                                                                                 aCGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCa                                      >  2:1915687/1‑140 (MQ=255)

                                                                                                  cGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCaa                                     >  1:1142714/1‑140 (MQ=255)

                                                                                                     tGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATaa                                  <  2:639994/140‑1 (MQ=255)

                                                                                                     tGATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATaa                                  <  1:1123602/140‑1 (MQ=255)

                                                                                                      gATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATaat                                 >  2:1800385/1‑139 (MQ=255)

                                                                                                      gATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATaat                                 >  2:552210/1‑139 (MQ=255)

                                                                                                      gATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATaaa                                 >  1:1005362/1‑140 (MQ=255)

                                                                                                      gATCGTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATaaa                                 >  1:1350101/1‑140 (MQ=255)

                                                                                                          gTTAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAAt                                    <  2:1534636/133‑1 (MQ=255)

                                                                                                           ttAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCtt                            <  1:2074699/140‑1 (MQ=255)

                                                                                                           ttAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCtt                            <  2:796372/140‑1 (MQ=255)

                                                                                                           ttAACGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCtt                            >  2:87740/1‑140 (MQ=255)

                                                                                                             aaCGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTa                          >  2:1868858/1‑140 (MQ=255)

                                                                                                              aCGTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTaa                         <  2:2144682/140‑1 (MQ=255)

                                                                                                                gTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAAtg                       <  1:1860762/140‑1 (MQ=255)

                                                                                                                gTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAAtg                       <  2:520861/140‑1 (MQ=255)

                                                                                                                gTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAAtg                       <  1:1189563/140‑1 (MQ=255)

                                                                                                                gTCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAAtg                       <  1:793640/140‑1 (MQ=255)

                                                                                                                 tCATAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAAtgt                      >  2:1567136/1‑140 (MQ=255)

                                                                                                                   aTAACGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATG‑AACTGCAATAAATTCTTTAATGTGAt                   >  1:1517629/1‑140 (MQ=255)

                                                                                                                      aCGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATAc                 <  2:40962/140‑1 (MQ=255)

                                                                                                                      aCGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATAc                 <  1:370683/140‑1 (MQ=255)

                                                                                                                      aCGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATAc                 <  2:1142714/140‑1 (MQ=255)

                                                                                                                      aCGAACAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATAc                 <  2:588694/140‑1 (MQ=255)

                                                                                                                          aCAGAAGCCTGTGGTATAATTTCCGTCAACTTGAGGCAATTGCCGAGCGTTTCATCCTTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATGCAAGc             >  2:60866/1‑140 (MQ=255)

                                                                                                                           cAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATACAAGcc            >  1:1027945/1‑140 (MQ=255)

                                                                                                                           cAGAAGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATACAAGcc            >  2:1490173/1‑140 (MQ=255)

                                                                                                                              aaGCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATACAAGCCTgg         >  2:466609/1‑140 (MQ=255)

                                                                                                                                gCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATACAAGCCTGGGc       <  2:1425245/140‑1 (MQ=255)

                                                                                                                                gCCTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATACAAGCCTGGGc       >  1:1542376/1‑140 (MQ=255)

                                                                                                                                 ccTGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATACAAGCCTGGGCg      <  1:1713210/140‑1 (MQ=255)

                                                                                                                                   tGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATACAAGCCTGGGCGtt    >  2:1312334/1‑140 (MQ=255)

                                                                                                                                   tGAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATACAAGCCTGGGCGtt    >  1:1576218/1‑140 (MQ=255)

                                                                                                                                    gAGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATACAAGCCTGGGCGttt   >  2:1095563/1‑139 (MQ=255)

                                                                                                                                     aGGTATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATACAAGCCTGGGCGTTCt  >  1:1874560/1‑140 (MQ=255)

ACAACATGGCCGCATTAATGCCGTTTTCCCATAACGATGGATCAACATAGTTTTGGTAATTTTTCATTACCCAGGCTTGAGGAACGTCTATATCCAGACGTTGATCGTTAACGTCATAACGAACAGAAGCCTGAGGGATAATTTCCGTCAAATTGAGGCAATTGCCGAGCGTTTCATCCCTGGCAAGCAGAACGGCTTTTTCGTTATTTATATCGGGAGAATTAATATGAAACTGCAATAAATTCTTTAATGTGATACAAGCCTGGGCGTTCT  >  NC_000913/154889‑155161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A